BAC Information

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BAC

Clone NameB6Ng01-036C20
Chromosome15 (Build37)
Map Location 21,977,915 - 22,127,300
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036C20.bB6Ng01-036C20.g
ACCDH864437DH864438
length1,0681,020
definitionDH864437|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C20, 5' end.DH864438|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,977,915 - 21,979,017)(22,126,173 - 22,127,300)
sequence
gaattcaagaatgaataaatcatttatgggcactgagcctaaattagcat
gaagttatgattcaacactcaaattatatttcattatctgaagttctaga
ggaatgtttgacatttgaaggtcataagaatgaaaaacgatgaaggagac
tgctttgcagtcataggtgagtgcaaggctgtgatttcttctgccacctt
ctctcatttataggataatggagattgttgtgtttcaatgcttcttgtta
tttgtgactatttcctgcttcattacttttctttagaaaaggagagtaaa
tgcaaattctcctgtcagagtccacacccctctgttacattactcatagc
tgaattcagcataaatgtcatgcagcgaataaagtgaatttttcagcaaa
gcttaatgcaaacttggaaaaaaataaggaaaacatgcagacctgcactc
ttacttctcactcatgatttcgtgattcaaacattttgcatgctatcaaa
agtagctcatgtatgcaagataacaaagaagaaattgccccaaatatgtg
gtactgaaaaactctcatgtcataacatgctatgtagcaatgaaattata
tttataaactttcaatatagggtctctggcacaaacttgttcaatagatc
tttccatctcagccctcagccaaaagtgcttgtatccgcactgcaaattc
aataatggactgtaatgaattcttccaaaccctctgtaactgtttgcaca
ttttcatgagaaatttatcattaagtaggaaattggaattcaatatctga
ggcatttgaaaggagtaagtcaatataatgataaagacagatatattgct
tgacaggaatagttaccctgagactcagtagactttctgtgaaatgtata
catggccatgagcgctttaatgctgtatttcagtctctgacagtatggga
ctctctctactttagtttctctcagttctgtcttcatatgtctctactct
aatatgaattaaacctatgaagtcttgctctttcagcacttcctggacta
gaaaaaagaacagtaaaa
gaattcacataaaattattgctattggcattgtagtattggtctattgct
aattagaagggatggttcagtgtgcctgtaattcttttaactctgtatat
tctatacatagcactcacagcttcaattttgtcacatacaaatgagaact
tgtttactttctttgaaatttagttaaaaaaatcatgaaattcctcaatt
caaaaccacaaagtttgaatttaacctttaaatttttaactctatttaat
tctaaatatagtgaaaaatatttacaataagttgagattaaatagataac
atcagacataagttcattgtatgtgatgattatattttaaaacgtcgtac
ctaatattttcctgttaacttaaaaacaggaaaatgattgcctttctctc
tgaatctattaactgcagtgttatactggtgtcttggtcatttctcttat
gaagaataggaaaattaaggacaagatagctcatatatgaagtaagatag
gtgtagttacagatcatctctttaggtgtattattaaaaaacaaaatcaa
aaacaacaaataacaaaaaaaacaaacaaaacaaaacaccctactaatac
aattaagtacaccgagctatgattatcgaacttaaaagtgtgtatcttga
tatgcaattataaagcctttagaaaaatctaaaataaatgtttattaatg
tactatcatctatacaggtattttaatccagcaactaaagaccaaagaca
ttctaggtctgtgtgatctggctggaatgcagatatgaccatagtacaaa
tctttaatcccaaacaatgatgcctagttgaaggaaagggaaataactcg
catagaaagatttgacagtagatatgtcactctctgagtacagcaagcaa
atgagctgttagagagcacgggagaagttatcatgactagtattgagtca
gctggagtcagcatggatgatcatttgtttcgcagtcagcagagttgagc
aactagatgatagagataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21977915_21979017
seq2: B6Ng01-036C20.b_42_1109

seq1  GAATTCAAGAATGAATAAATCATTTATGGGCACTGAGCCTAAATTAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAATGAATAAATCATTTATGGGCACTGAGCCTAAATTAGCAT  50

seq1  GAAGTTATGATTCAACACTCAAATTATATTTCATTATCTGAAGTTCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATGATTCAACACTCAAATTATATTTCATTATCTGAAGTTCTAGA  100

seq1  GGAATGTTTGACATTTGAAGGTCATAAGAATGAAAAACGATGAAGGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTTGACATTTGAAGGTCATAAGAATGAAAAACGATGAAGGAGAC  150

seq1  TGCTTTGCAGTCATAGGTGAGTGCAAGGCTGTGATTTCTTCTGCCACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCAGTCATAGGTGAGTGCAAGGCTGTGATTTCTTCTGCCACCTT  200

seq1  CTCTCATTTATAGGATAATGGAGATTGTTGTGTTTCAATGCTTCTTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTTATAGGATAATGGAGATTGTTGTGTTTCAATGCTTCTTGTTA  250

seq1  TTTGTGACTATTTCCTGCTTCATTACTTTTCTTTAGAAAAGGAGAGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACTATTTCCTGCTTCATTACTTTTCTTTAGAAAAGGAGAGTAAA  300

seq1  TGCAAATTCTCCTGTCAGAGTCCACACCCCTCTGTTACATTACTCATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTCTCCTGTCAGAGTCCACACCCCTCTGTTACATTACTCATAGC  350

seq1  TGAATTCAGCATAAATGTCATGCAGCGAATAAAGTGAATTTTTCAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAGCATAAATGTCATGCAGCGAATAAAGTGAATTTTTCAGCAAA  400

seq1  GCTTAATGCAAACTTGGAAAAAAATAAGGAAAACATGCAGACCTGCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATGCAAACTTGGAAAAAAATAAGGAAAACATGCAGACCTGCACTC  450

seq1  TTACTTCTCACTCATGATTTCGTGATTCAAACATTTTGCATGCTATCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTCACTCATGATTTCGTGATTCAAACATTTTGCATGCTATCAAA  500

seq1  AGTAGCTCATGTATGCAAGATAACAAAGAAGAAATTGCCCCAAATATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTCATGTATGCAAGATAACAAAGAAGAAATTGCCCCAAATATGTG  550

seq1  GTACTGAAAAACTCTCATGTCATAACATGCTATGTAGCAATGAAATTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAAAAACTCTCATGTCATAACATGCTATGTAGCAATGAAATTATA  600

seq1  TTTATAAACTTTCAATATAGGGTCTCTGGCACAAACTTGTTCAATAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACTTTCAATATAGGGTCTCTGGCACAAACTTGTTCAATAGATC  650

seq1  TTTCCATCTCAGCCCTCAGCCAAAAGTGCTTGTATCCGCACTGCAAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCTCAGCCCTCAGCCAAAAGTGCTTGTATCCGCACTGCAAATTC  700

seq1  AATAATGGACTGTAATGAATTCTTCCAAACCCTCTGTAACTGTTTGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGACTGTAATGAATTCTTCCAAACCCTCTGTAACTGTTTGCACA  750

seq1  TTTTCATGAGAAATTTATCATTAAGTAGGAAATTGGAATTCAATATCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGAGAAATTTATCATTAAGTAGGAAATTGGAATTCAATATCTGA  800

seq1  GGCATTTGAAAGGAGTAAGTCAATATAATGATAAAGACAAGATATATTGC  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCATTTGAAAGGAGTAAGTCAATATAATGATAAAGAC-AGATATATTGC  849

seq1  TTGACAGGAATAGTTACCCTGAGACTCAGGTAGACTTTCTGTGGAAATGT  900
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  TTGACAGGAATAGTTACCCTGAGACTCA-GTAGACTTTCTGT-GAAATGT  897

seq1  ATAACCATGGCCCATGAAGAAGGGCTTTTAAAATGCTGTAATTTCAGTCT  950
      |||  ||||| |||||    || |||||   |||||||| ||||||||||
seq2  ATA--CATGG-CCATG----AGCGCTTT---AATGCTGT-ATTTCAGTCT  936

seq1  CCTGACAGTTATGGGAACTTCTCTCTTAACTTTAAGTTTTCCTCTCAGTT  1000
       ||||||| |||||||    ||||||  ||||| |||||  ||||||| |
seq2  -CTGACAG-TATGGGA----CTCTCTCTACTTT-AGTTT--CTCTCAG-T  976

seq1  TCTGTCTTCAATATGTCTTCTACTTCTTAATATTGAAATAAAACACTATG  1050
      ||||||||| ||||||| ||||||   ||||| |||| ||||   |||||
seq2  TCTGTCTTC-ATATGTC-TCTACT--CTAATA-TGAATTAAA--CCTATG  1019

seq1  AAGTCTTTGCTCTTCTCAGCACTTTCTGTGACTAGAAAATAGAACAGTTA  1100
      ||||| |||||||| ||||||||| ||| |||||||||| |||||||| |
seq2  AAGTC-TTGCTCTT-TCAGCACTTCCTG-GACTAGAAAAAAGAACAGTAA  1066

seq1  AAA  1103
      || 
seq2  AA-  1068

seq1: chr15_22126173_22127300
seq2: B6Ng01-036C20.g_66_1085 (reverse)

seq1  TTTATCTCAAATTCTCACTTAGTTGCTCTGCTTGGTTCAAACTAACTCTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACAATTTTTTCTAATCTTCTTACTCCTTCTTAATCTCTGGCTTCAA---C  97
                                   || ||||||  | || |    
seq2  -----------------------------TTTATCTCTATCATCTAGTTG  21

seq1  CTC--CTCTGCTGAACTGCCCGAAAACACAAATGACTCAATTCCACTGCC  145
      |||  |||||||| ||||  ||||   |||||||| |||  |||| || |
seq2  CTCAACTCTGCTG-ACTG--CGAA---ACAAATGA-TCA--TCCA-TG-C  60

seq1  TGACTCCCAGCTGACTCAATACCTAAGTCATTGATAAACTTTCTCCCCGT  195
      ||||| ||||||||||||||||   ||||| ||||||   |||| |||||
seq2  TGACT-CCAGCTGACTCAATAC--TAGTCA-TGATAA--CTTCT-CCCGT  103

seq1  GCTTCTCTTAAACAGCTTCATTTTGCTTTGCTGTACTCAGGAGAGTTGAA  245
      || |||||  |||||| ||| ||||| |||||||||||| ||||||   |
seq2  GC-TCTCT--AACAGC-TCA-TTTGC-TTGCTGTACTCA-GAGAGT--GA  144

seq1  CATATCCTAACCTGTCAAATCTTTCTATGGCGAGTTATTTTCCCTTTCCT  295
      ||||| |||  ||||||||||||||||| |||||||| ||||||||||||
seq2  CATAT-CTA--CTGTCAAATCTTTCTAT-GCGAGTTA-TTTCCCTTTCCT  189

seq1  TCAACTAGGCATCATTGTTTGGGATTAAAGATTTGTACTATGGTCATATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAGGCATCATTGTTTGGGATTAAAGATTTGTACTATGGTCATATC  239

seq1  TGCATTCCAGCCAGATCACACAGACCTAGAATGTCTTTGGTCTTTAGTTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCAGCCAGATCACACAGACCTAGAATGTCTTTGGTCTTTAGTTG  289

seq1  CTGGATTAAAATACCTGTATAGATGATAGTACATTAATAAAACATTTTAT  445
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  CTGGATTAAAATACCTGTATAGATGATAGTACATTAAT-AAACA-TTTAT  337

seq1  TTTAGATTTTTCTAAAGGCTTTATAATTGCATATCAAGATACACACTTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTTTTCTAAAGGCTTTATAATTGCATATCAAGATACACACTTTT  387

seq1  AAGTTCGATAATCATAGCTCGGTGTACTTAATTGTATTAGTAGGGTGTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCGATAATCATAGCTCGGTGTACTTAATTGTATTAGTAGGGTGTTT  437

seq1  TGTTTTGTTTGTTTTTTTTGTTATTTGTTGTTTTTGATTTTGTTTTTTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTGTTTTTTTTGTTATTTGTTGTTTTTGATTTTGTTTTTTAA  487

seq1  TAATACACCTAAAGAGATGATCTGTAACTACACCTATCTTACTTCATATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACACCTAAAGAGATGATCTGTAACTACACCTATCTTACTTCATATA  537

seq1  TGAGCTATCTTGTCCTTAATTTTCCTATTCTTCATAAGAGAAATGACCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATCTTGTCCTTAATTTTCCTATTCTTCATAAGAGAAATGACCAA  587

seq1  GACACCAGTATAACACTGCAGTTAATAGATTCAGAGAGAAAGGCAATCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGTATAACACTGCAGTTAATAGATTCAGAGAGAAAGGCAATCAT  637

seq1  TTTCCTGTTTTTAAGTTAACAGGAAAATATTAGGTACGACGTTTTAAAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTTTTAAGTTAACAGGAAAATATTAGGTACGACGTTTTAAAAT  687

seq1  ATAATCATCACATACAATGAACTTATGTCTGATGTTATCTATTTAATCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATCACATACAATGAACTTATGTCTGATGTTATCTATTTAATCTC  737

seq1  AACTTATTGTAAATATTTTTCACTATATTTAGAATTAAATAGAGTTAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTGTAAATATTTTTCACTATATTTAGAATTAAATAGAGTTAAAA  787

seq1  ATTTAAAGGTTAAATTCAAACTTTGTGGTTTTGAATTGAGGAATTTCATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGGTTAAATTCAAACTTTGTGGTTTTGAATTGAGGAATTTCATG  837

seq1  ATTTTTTTAACTAAATTTCAAAGAAAGTAAACAAGTTCTCATTTGTATGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTAACTAAATTTCAAAGAAAGTAAACAAGTTCTCATTTGTATGT  887

seq1  GACAAAATTGAAGCTGTGAGTGCTATGTATAGAATATACAGAGTTAAAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATTGAAGCTGTGAGTGCTATGTATAGAATATACAGAGTTAAAAG  937

seq1  AATTACAGGCACACTGAACCATCCCTTCTAATTAGCAATAGACCAATACT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGGCACACTGAACCATCCCTTCTAATTAGCAATAGACCAATACT  987

seq1  ACAATGCCAATAGCAATAATTTTATGTGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  ACAATGCCAATAGCAATAATTTTATGTGAATTC  1020