BAC Information

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BAC

Clone NameB6Ng01-036M23
Chromosome15 (Build37)
Map Location 48,113,795 - 48,114,835
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC665130, LOC100039485, LOC100039493
Downstream geneEG665146, LOC100039600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036M23.bB6Ng01-036M23.g
ACCDH864868DH864869
length1,0261,148
definitionDH864868|Mus musculus domesticus DNA, BAC clone: B6Ng01-036M23, 5' end.DH864869|Mus musculus domesticus DNA, BAC clone: B6Ng01-036M23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctgattattttccaaggtcaggcttaacaacagcattaggcc
accttagaaagcagcagacaaagaatttgtagaatcatctgggtaatgca
atgagtttatatgtatttaaaaactgagaaaaaatccaactcaaaataat
caaaatctaattaggatataaaatattaataaaagataaagttagggtgt
acctttagctaactcttttttcattcaacattatcatcttccccaaagta
ctaggtattcctagaaccttgtcaaaagagaattgcatagtagctttcct
atgaatcaccatctgtgtctaaaactgccagattggtggcagattgacct
agtaatgtacctcataaatatgaaaattctgtgggaagtatttttggtgg
ttttgacccatataatatttaaattatttgattaaattatgaagattata
aaagcagaatctataaaacaataccaaaaataacattataatcaagttca
tatacaaaagaacatttaccctgcaaaaggaattgctaaataggagcaaa
gactgggagaaaatatttagagatccttgttaggatttggtccaaaatgc
acacatacagaaatgaaacaaaatttttcaaagatcagtaagccctcaat
tttattccatagtctgttaaacagcagagagatgaaccttggtattgttc
caataacaagtaataaagtcttttgctacaacattgatcacaactgaaaa
cactgttaaaattcttccagagtacagtaaactccacaaaagaggtagtc
ataaaatgaaaaactccacatactaagacacattatattttttcaaggac
agaagagtcttcctctctgggtcacacatgccatcataggcaatcttctc
atgttttcagaacttgaagcataggttcagtcctgtctcttcagtctact
tgcttaaatcttttctttttatttctgaacagggtttctctgtgagcctt
ggctgtcttggaaactactctgtaga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaatcctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaatattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactac
cttcatagcagccttatttataatagccagaagatggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatatggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atgtatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaaggagttacagagacaaagcttggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagattttatcgaa
aggacccaggatttagctgtttcttgtgagactatgctggggctagcaaa
cacagaagtggatgctcccagtcagctaatggatggatcacaggctccat
tgagagctagagaagtacccatgactatggatctgcaacctatatgtgga
acaacatatgactatcagtacccggagccttgacctctagctgctatgta
tccaaagatgtcttgttggccatacctggaaagagcattgacacctaact
taatgtccagtacaggatacgtgccaaaggtgatgtggtggtctagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_48113795_48114835
seq2: B6Ng01-036M23.b_45_1070 (reverse)

seq1  TCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  50
      ||||||||||   ||||| |||||||| |||| |||||||||||||||| 
seq2  TCTACAGAGTAGTTTCCAAGACAGCCAAGGCT-CACAGAGAAACCCTGT-  48

seq1  TCAGAAAAAAAAAAAAAAAAAAAAGATTTTAAAGCAAGTAGACTGGAGAG  100
      ||||      ||| ||||| |||||||||  |||||||||||||| ||||
seq2  TCAG------AAATAAAAAGAAAAGATTT--AAGCAAGTAGACTGAAGAG  90

seq1  ACAGGACCTGAACCTATGCTTCAAGTTTCTGAAAACATGGAGAGATTGCC  150
      |||||| |||||||||||||||||| |||||||||||||   ||||||||
seq2  ACAGGA-CTGAACCTATGCTTCAAG-TTCTGAAAACATGAGAAGATTGCC  138

seq1  TATGATGGCATGTGTGGACCCAGAGAGGAAGACTCTTTCTGTCCTTGAAA  200
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  TATGATGGCATGTGT-GACCCAGAGAGGAAGACTC-TTCTGTCCTTGAAA  186

seq1  AAATATAATGTGTCTTAGTATGTGGAGTTTTTCATTTTATGACTACCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAATGTGTCTTAGTATGTGGAGTTTTTCATTTTATGACTACCTCT  236

seq1  TTTGTGGAGTTTACTGTTACTCTGGAAGAATTTTAACAGTGTTTTCAGTT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTGTGGAGTTTACTG-TACTCTGGAAGAATTTTAACAGTGTTTTCAGTT  285

seq1  GTGATCAATGTTGTAGCAAAAGACTTTATTACTTGTTATTGGAACAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAATGTTGTAGCAAAAGACTTTATTACTTGTTATTGGAACAATAC  335

seq1  CAAGGTTCATCTCTCTGCTGTTTAACAGACTATGGAATAAAATTGAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTCATCTCTCTGCTGTTTAACAGACTATGGAATAAAATTGAGGGC  385

seq1  TTACTGATCTTTGAAAAATTTTGTTTCATTTCTGTATGTGTGCATTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGATCTTTGAAAAATTTTGTTTCATTTCTGTATGTGTGCATTTTGG  435

seq1  ACCAAATCCTAACAAGGATCTCTAAATATTTTCTCCCAGTCTTTGCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATCCTAACAAGGATCTCTAAATATTTTCTCCCAGTCTTTGCTCCT  485

seq1  ATTTAGCAATTCCTTTTGCAGGGTAAATGTTCTTTTGTATATGAACTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCAATTCCTTTTGCAGGGTAAATGTTCTTTTGTATATGAACTTGA  535

seq1  TTATAATGTTATTTTTGGTATTGTTTTATAGATTCTGCTTTTATAATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGTTATTTTTGGTATTGTTTTATAGATTCTGCTTTTATAATCTT  585

seq1  CATAATTTAATCAAATAATTTAAATATTATATGGGTCAAAACCACCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTAATCAAATAATTTAAATATTATATGGGTCAAAACCACCAAAA  635

seq1  ATACTTCCCACAGAATTTTCATATTTATGAGGTACATTACTAGGTCAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCCCACAGAATTTTCATATTTATGAGGTACATTACTAGGTCAATC  685

seq1  TGCCACCAATCTGGCAGTTTTAGACACAGATGGTGATTCATAGGAAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCAATCTGGCAGTTTTAGACACAGATGGTGATTCATAGGAAAGCT  735

seq1  ACTATGCAATTCTCTTTTGACAAGGTTCTAGGAATACCTAGTACTTTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCAATTCTCTTTTGACAAGGTTCTAGGAATACCTAGTACTTTGGG  785

seq1  GAAGATGATAATGTTGAATGAAAAAAGAGTTAGCTAAAGGTACACCCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGATAATGTTGAATGAAAAAAGAGTTAGCTAAAGGTACACCCTAA  835

seq1  CTTTATCTTTTATTAATATTTTATATCCTAATTAGATTTTGATTATTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTTTTATTAATATTTTATATCCTAATTAGATTTTGATTATTTTG  885

seq1  AGTTGGATTTTTTCTCAGTTTTTAAATACATATAAACTCATTGCATTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGATTTTTTCTCAGTTTTTAAATACATATAAACTCATTGCATTACC  935

seq1  CAGATGATTCTACAAATTCTTTGTCTGCTGCTTTCTAAGGTGGCCTAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATTCTACAAATTCTTTGTCTGCTGCTTTCTAAGGTGGCCTAATG  985

seq1  CTGTTGTTAAGCCTGACCTTGGAAAATAATCAGATGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTTAAGCCTGACCTTGGAAAATAATCAGATGAATTC  1026