BAC Information

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BAC

Clone NameB6Ng01-038G14
Chromosome15 (Build37)
Map Location 73,767,886 - 73,768,967
singlet/doubletsinglet
Overlap geneLOC100040966
Upstream gene1810044A24Rik, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276
Downstream geneEG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038G14.bB6Ng01-038G14.g
ACCDH865977DH865978
length1,0781,238
definitionDH865977|Mus musculus domesticus DNA, BAC clone: B6Ng01-038G14, 5' end.DH865978|Mus musculus domesticus DNA, BAC clone: B6Ng01-038G14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaggccagcaggattgtctcgagtcatgtagtgagcaggaggc
acagttgtacattgttctgatgctgtcagtgttcaatccatgttagcgac
caggtctcatccacatctgtgtacccaggtctgggtcatttcctgaagtc
tgacgtcgtcatgatcctatgaggcaagtgatagatatcattatttccat
tctgcagatgaagaaactgaggcctgagaccacacagttgatgataaaag
cctggttggaagaggtctcacacagcgagagaccttccttctgtaacacg
tgtccagcaatgctgaccatggtttctgtttcagtgactctatcaagctt
tctcatgtaatgctcagtgtcacacttcccctgtcctacacaaatggact
tagccctcaaggatttactagtttcagtgccatggagagtttggtgagtg
tccccagcacccaacctggtagagctcagcccccaccatgcctaagaaga
ccctgacaagccctgtgggctgtgatgtacaaagcactcctggttggaac
cttgagccacccccaggctcatgtgttgatccatttagagaacactttag
taggtgggggtctggctagaacaggcctagatttacgggcagcttttgaa
atgtatctttttttgtttgtttgttttgttttgagacaggttttctctgt
gtagctctggaactccctctgtagaccggactggcctttgaactttccag
aaatctgcctgccttttgcctcccgagtgctgggattgaaggtgtctttt
ctgtttgttttttgcttcctcttcaatgccagtcaacactaggtgagtcg
cctctgccaccaactccttctgccatgatgctttgccttatctcaaatga
aagcaagggacccaccgaccttggattaagacctgttgcaactgcaaacc
atgataacctttcctccttcagttgtatcatttaggtatagtcaagcaat
aagtgtgactaaaacagggacttaaacaccaggagtagagatcatgaagc
cctccagaaggtggttcttgccaagcag
gaattccccttttgccacaacctcaacaacatctgttgtcagggtttgtt
tgtttgtttgtttaatcttagcgagtctggctgggttgaaatgaaacctc
aatgttggatcagcttgcactcaattgttaaagaagtggaacacattttg
agatacttcttagccattgttatttcttctattgagaatcctctgcctcg
acccataacccacttgaaggatctgtggctctgtttcttgaggtttggtt
ggttggttttgtacagtatggatactaatcctatgattattatagtcaga
tatagagttgacagagattacttcctgctgtgtgggtttctcattcactg
agttgattgtttctttagctttttagtttgattgggacccacttgtcgat
tgttaaccttaattcctggacaaaataagtcctcggaagttcccttcctt
cattgatagcctgtaggaaactgcctacacctgtcctagccacttgagtg
tttaaagccattggggttttaaaatttgagatatttgatccccttggact
taatttttgtgcagggtgagagatatggatcttgcccattgagcaatctc
accagtccctattaaaatatttttaagtacaaagactggacagtgattta
gttaactcagtgatagcacacttgccttggatacaggagagccatccctg
atacagagaaagaggaagattaaaagagaccaaaagaaacaagccaacac
aaattaaatgaactggagaccatgtgaggaggaaaaccaacctaagccat
atgctcagcagagtagagggggtgtggcctctctttattgacgtagtgtg
gtggacaagcaatccacagcacaggcaatcttatgaactggagatacagt
ttaataccttttaatcctatagttaaaggaaatttcctggagcagataga
atagcaaaaagaaagatactagagatacatgtagatgctgacaactccag
ggatccaaggcccatagacgctttccaagagaacagaaagggctgagaaa
tggagcaaggggaaaactcaaaagctggcccagggaacgggatactagtg
agagggagatagcttattcggaactgagatttgtaataagcttcaataaa
ttgaatgcgacaactgcaggaattcaaacatgtgaatcagtgactgacgg
actatatcagatcaacctatggtgcggtcatgtgcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_73767886_73768967
seq2: B6Ng01-038G14.b_47_1124

seq1  GAATTCAGAGGCCAGCAGGATTGTCTCGAGTCATGTAGTGAGCAGGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCCAGCAGGATTGTCTCGAGTCATGTAGTGAGCAGGAGGC  50

seq1  ACAGTTGTACATTGTTCTGATGCTGTCAGTGTTCAATCCATGTTAGCGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTACATTGTTCTGATGCTGTCAGTGTTCAATCCATGTTAGCGAC  100

seq1  CAGGTCTCATCCACATCTGTGTACCCAGGTCTGGGTCATTTCCTGAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTCATCCACATCTGTGTACCCAGGTCTGGGTCATTTCCTGAAGTC  150

seq1  TGACGTCGTCATGATCCTATGAGGCAAGTGATAGATATCATTATTTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTCGTCATGATCCTATGAGGCAAGTGATAGATATCATTATTTCCAT  200

seq1  TCTGCAGATGAAGAAACTGAGGCCTGAGACCACACAGTTGATGATAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGATGAAGAAACTGAGGCCTGAGACCACACAGTTGATGATAAAAG  250

seq1  CCTGGTTGGAAGAGGTCTCACACAGCGAGAGACCTTCCTTCTGTAACACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTGGAAGAGGTCTCACACAGCGAGAGACCTTCCTTCTGTAACACG  300

seq1  TGTCCAGCAATGCTGACCATGGTTTCTGTTTCAGTGACTCTATCAAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCAATGCTGACCATGGTTTCTGTTTCAGTGACTCTATCAAGCTT  350

seq1  TCTCATGTAATGCTCAGTGTCACACTTCCCCTGTCCTACACAAATGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTAATGCTCAGTGTCACACTTCCCCTGTCCTACACAAATGGACT  400

seq1  TAGCCCTCAAGGATTTACTAGTTTCAGTGCCATGGAGAGTTTGGTGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTCAAGGATTTACTAGTTTCAGTGCCATGGAGAGTTTGGTGAGTG  450

seq1  TCCCCAGCACCCAACCTGGTAGAGCTCAGCCCCCACCATGCCTAAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCACCCAACCTGGTAGAGCTCAGCCCCCACCATGCCTAAGAAGA  500

seq1  CCCTGACAAGCCCTGTGGGCTGTGATGTACAAAGCACTCCTGGTTGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACAAGCCCTGTGGGCTGTGATGTACAAAGCACTCCTGGTTGGAAC  550

seq1  CTTGAGCCACCCCCAGGCTCATGTGTTGATCCATTTAGAGAACACTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCCACCCCCAGGCTCATGTGTTGATCCATTTAGAGAACACTTTAG  600

seq1  TAGGTGGGGGTCTGGCTAGAACAGGCCTAGATTTACGGGCAGCTTTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGGGGTCTGGCTAGAACAGGCCTAGATTTACGGGCAGCTTTTGAA  650

seq1  ATGTATCTTTTTTTGTTTGTTTGTTTTGTTTTGAGACAGGTTTTCTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTTTTTTTGTTTGTTTGTTTTGTTTTGAGACAGGTTTTCTCTGT  700

seq1  GTAGCTCTGGAACTCCCTCTGTAGACCGGACTGGCC-TTGAAC-TTCCAG  748
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  GTAGCTCTGGAACTCCCTCTGTAGACCGGACTGGCCTTTGAACTTTCCAG  750

seq1  AAATCTGCCTGCC-TTTGCCTCCCGAGTGCTGGGATTGAAGGTGTC-TTT  796
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  AAATCTGCCTGCCTTTTGCCTCCCGAGTGCTGGGATTGAAGGTGTCTTTT  800

seq1  CTGTTTGTTTTTTGCTTCCTCTTCAATGCCAGTCAACACTAGGTGAGTCG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTTTTTTGCTTCCTCTTCAATGCCAGTCAACACTAGGTGAGTCG  850

seq1  CCTCTGCCACCAACTCCTTCTGCCATGATGCTTTGCCTTATCTCAGACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||| | ||
seq2  CCTCTGCCACCAACTCCTTCTGCCATGATGCTTTGCCTTATCTCA-AATG  899

seq1  AAGGCAAGGGACCCACCGACCTTGGATTAAGACCTG-TGCAACTGCAAAC  945
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGCAAGGGACCCACCGACCTTGGATTAAGACCTGTTGCAACTGCAAAC  949

seq1  CATGATAAACCTTTCTTCCTTCAAGTTGTATCATTTAGGTATTAGTCACA  995
      |||||| |||||||| |||||| |||||||||||||||||| |||||| |
seq2  CATGAT-AACCTTTCCTCCTTC-AGTTGTATCATTTAGGTA-TAGTCA-A  995

seq1  GCAATAAGTGTGACTAAAACAGGTACCTAAACCACCCAGGAGTAAGAGAT  1045
      ||||||||||||||||||||||| || |||||   |||||||| ||||||
seq2  GCAATAAGTGTGACTAAAACAGGGACTTAAAC--ACCAGGAGT-AGAGAT  1042

seq1  CCATGAAGCCTTCCAG-AGGTGGTTTCTGCCAAAGCAG  1082
       ||||||||| ||||| ||||||||  |||| ||||||
seq2  -CATGAAGCCCTCCAGAAGGTGGTTCTTGCC-AAGCAG  1078