BAC Information

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BAC

Clone NameB6Ng01-039E13
Chromosome15 (Build37)
Map Location 81,732,594 - 81,880,543
singlet/doubletdoublet
Overlap geneAco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1
Upstream geneTnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a
Downstream gene4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039E13.bB6Ng01-039E13.g
ACCDH866593DH866594
length4321,129
definitionDH866593|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E13, 5' end.DH866594|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,880,106 - 81,880,543)(81,732,594 - 81,733,731)
sequence
agggatataagacatactcaagccatagcatattcttaacaagatagtga
ttggcagaaatggtgaacaaactggcatgtgctcagtaaagcaaaaggaa
ggaagaactaaaacctgggggggggggtgcagaatgtggatggatgagaa
accagtaagtcacaacaagtatgtaggacacatttctaaaataaactggt
ttccagaatatgtcagcagctatttagttgctaacaaattagaaaaggac
gggatgattctgaaaaagaaaaaaaaaaaccctcagggaacagaattaac
tagataattaggtggggtgttgatagactaccatgatcgtgaaaacagca
tgtcctgtctggagtagtggcacaaaggcctggaattccagcactttaga
ggtggaggcaaggggattcctagttcacagag
gaattctgtgttactcaccttcatgagttatttcttaacctgtggctctt
tagggattgctactcccacatctttgcatatggctgagacaagtgacagg
gagggaaatgaagagtggtactggccagctctgtccatctagatgccacc
attgaaggaaggtgtcagcccttctagccttctccatctccaagggatga
aggcccttcatgccatgctaataagtccatgggtagatgcctcacttctg
tggagacatgggtgtctgtgatagcctagcaaccctgtccacattcagtg
ctgatagtttgtagagcctttcacatctctcctcacccttgttcttccta
gtgtccaggagtgggctaatttccccaggcagatgagctgaaccccaggt
gaaggatcttcttgcaaaataataaaatattgcctatatatggatgacat
gatatctgtcattcagtcatcacagtggtctagcgagatgacagctgtta
gtataggagacgaagatgaagccttgagaggttaagtgtattgcccaaga
cctaacaaaaacaaggcagggtggggaggcaaaagcctggcacacttagc
ccagaaggaccttcccgtgaatctagcaccttggagggacctgaaccatg
ggtagaactgatgtgggttactgcccctgctttcttacccagtgttctag
aaagcattcataccctggccttcacagcttggagagtcttttggtagagc
agccctgccgaacaggccaagtgatgcctccagggtatgaaggcctggga
ggcaggctgtgtactactcagacactggagagctcctggcatctcggtgc
ttatttaaataccctgtggggcagttcctgacagaacagtctaccctgat
tagaagcctggaagcggaccacttaccttgggcagtttacatcataggtc
tgtcaggagctctttcaagctcatcacggggcacattctgacgtgccagt
ctgtccacttcttccacgtcgtggaggttagatgactggtatttacatgg
aggagactgagggacggggaggcagttacagacctagtccacctggaaaa
ctttaagctcatgcatgagccgggcacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_81880106_81880543
seq2: B6Ng01-039E13.b_46_483 (reverse)

seq1  CTCTGTGAACTTGGAATCCCCTTGCCTCCACCTCTAAAGTGCTGGAATTC  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAACTAGGAATCCCCTTGCCTCCACCTCTAAAGTGCTGGAATTC  50

seq1  CAGGCCTTTGTGCCACTACTCCAGACAGGACATGCTGTTTTCACGATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTTTGTGCCACTACTCCAGACAGGACATGCTGTTTTCACGATCAT  100

seq1  GGTAGTCTATCAACACCCCACCTAATTATCTAGTTAATTCTGTTCCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCTATCAACACCCCACCTAATTATCTAGTTAATTCTGTTCCCTGA  150

seq1  GGGTTTTTTTTTTTCTTTTTCAGAATCATCCCGTCCTTTTCTAATTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTTTTTTTCTTTTTCAGAATCATCCCGTCCTTTTCTAATTTGTT  200

seq1  AGCAACTAAATAGCTGCTGACATATTCTGGAAACCAGTTTATTTTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTAAATAGCTGCTGACATATTCTGGAAACCAGTTTATTTTAGAAA  250

seq1  TGTGTCCTACATACTTGTTGTGACTTACTGGTTTCTCATCCATCCACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTACATACTTGTTGTGACTTACTGGTTTCTCATCCATCCACATT  300

seq1  CTGCACCCCCCCCCCCAGGTTTTAGTTCTTCCTTCCTTTTGCTTTACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCCCCCCCCCCAGGTTTTAGTTCTTCCTTCCTTTTGCTTTACTGA  350

seq1  GCACATGCCAGTTTGTTCACCATTTCTGCCAATCACTATCTTGTTAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCCAGTTTGTTCACCATTTCTGCCAATCACTATCTTGTTAAGAA  400

seq1  TATGCTATGGCTTGAGTATGTCTTATATCCCTGAATTC  438
      ||||||||||||||||||||||||||||||||||||||
seq2  TATGCTATGGCTTGAGTATGTCTTATATCCCTGAATTC  438

seq1: chr15_81732594_81733731
seq2: B6Ng01-039E13.g_67_1195

seq1  GAATTCTGTGTTACTCACCTTCATGAGTTATTTCTTAACCTGTGGCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTTACTCACCTTCATGAGTTATTTCTTAACCTGTGGCTCTT  50

seq1  TAGGGATTGCTACTCCCACATCTTTGCATATGGCTGAGACAAGTGACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATTGCTACTCCCACATCTTTGCATATGGCTGAGACAAGTGACAGG  100

seq1  GAGGGAAATGAAGAGTGGTACTGGCCAGCTCTGTCCATCTAGATGCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAATGAAGAGTGGTACTGGCCAGCTCTGTCCATCTAGATGCCACC  150

seq1  ATTGAAGGAAGGTGTCAGCCCTTCTAGCCTTCTCCATCTCCAAGGGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGAAGGTGTCAGCCCTTCTAGCCTTCTCCATCTCCAAGGGATGA  200

seq1  AGGCCCTTCATGCCATGCTAATAAGTCCATGGGTAGATGCCTCACTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTTCATGCCATGCTAATAAGTCCATGGGTAGATGCCTCACTTCTG  250

seq1  TGGAGACATGGGTGTCTGTGATAGCCTAGCAACCCTGTCCACATTCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACATGGGTGTCTGTGATAGCCTAGCAACCCTGTCCACATTCAGTG  300

seq1  CTGATAGTTTGTAGAGCCTTTCACATCTCTCCTCACCCTTGTTCTTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGTTTGTAGAGCCTTTCACATCTCTCCTCACCCTTGTTCTTCCTA  350

seq1  GTGTCCAGGAGTGGGCTAATTTCCCCAGGCAGATGAGCTGAACCCCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAGGAGTGGGCTAATTTCCCCAGGCAGATGAGCTGAACCCCAGGT  400

seq1  GAAGGATCTTCTTGCAAAATAATAAAATATTGCCTATATATGGATGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATCTTCTTGCAAAATAATAAAATATTGCCTATATATGGATGACAT  450

seq1  GATATCTGTCATTCAGTCATCACAGTGGTCTAGCGAGATGACAGCTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTGTCATTCAGTCATCACAGTGGTCTAGCGAGATGACAGCTGTTA  500

seq1  GTATAGGAGACGAAGATGAAGCCTTGAGAGGTTAAGTGTATTGCCCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGAGACGAAGATGAAGCCTTGAGAGGTTAAGTGTATTGCCCAAGA  550

seq1  CCTAACAAAAACAAGGCAGGGTGGGGAGGCAAAAGCCTGGCACACTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAAAAACAAGGCAGGGTGGGGAGGCAAAAGCCTGGCACACTTAGC  600

seq1  CCAGAAGGACCTTCCCGTGAATCTAGCACCTTGGAGGGACCTGAACCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGACCTTCCCGTGAATCTAGCACCTTGGAGGGACCTGAACCATG  650

seq1  GGTAGAACTGATGTGGGTTACTGCCCCTGCTTTCTTACCCAGTGTTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAACTGATGTGGGTTACTGCCCCTGCTTTCTTACCCAGTGTTCTAG  700

seq1  AAAGCATTCATACCCTGGCCTTCACAGCTTGGAGAGTCTTTTGGTAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTCATACCCTGGCCTTCACAGCTTGGAGAGTCTTTTGGTAGAGC  750

seq1  AGCCCTGCCGAACAGGCCAAGTGATGCCTCCAGGGTATGAAGGCCTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCCGAACAGGCCAAGTGATGCCTCCAGGGTATGAAGGCCTGGGA  800

seq1  GGCAGGCTGTGTACTACTCAGACACTGGAGAGCTCCTGGCATCTCGGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTGTGTACTACTCAGACACTGGAGAGCTCCTGGCATCTCGGTGC  850

seq1  TTATTTAAATACCCTGTGGGACAGTTCCTGACAGAACAGTCTACCCTGAT  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATTTAAATACCCTGTGGGGCAGTTCCTGACAGAACAGTCTACCCTGAT  900

seq1  TAGAAGCCTGGAAGGCGGACCACTTACCCTGGGCAGTTTACATCATAGGT  950
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  TAGAAGCCTGGAA-GCGGACCACTTACCTTGGGCAGTTTACATCATAGGT  949

seq1  CTGTCAGGAGCTCTTTCCAGGCTCATCACGGGGCACATTCTGACGTGCCA  1000
      |||||||||||||||| || ||||||||||||||||||||||||||||||
seq2  CTGTCAGGAGCTCTTT-CAAGCTCATCACGGGGCACATTCTGACGTGCCA  998

seq1  GTCTGTCCACTTCTTCCCACGTCGT-GAGGTTAAGATGACCTGAGTACTT  1049
      ||||||||||||||| ||||||||| |||||| |||||| ||| ||| ||
seq2  GTCTGTCCACTTCTT-CCACGTCGTGGAGGTT-AGATGA-CTG-GTA-TT  1043

seq1  TACAT-GAGGAGACTGAGGCACGGGGAGGCAGTTACAGACCCAAGTCACA  1098
      ||||| ||||||||||||| ||||||||||||||||||| || |||| ||
seq2  TACATGGAGGAGACTGAGGGACGGGGAGGCAGTTACAGA-CCTAGTC-CA  1091

seq1  CAGTAGAAACTATTAAAGCT-ATGCATGAGCCGGGCCACCT  1138
      |     ||||  || ||||| |||||||||||||| |||||
seq2  CCTGGAAAAC--TTTAAGCTCATGCATGAGCCGGG-CACCT  1129