BAC Information

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BAC

Clone NameB6Ng01-041I01
Chromosome15 (Build37)15 (Build37)
Map Location 21,005,660 - 21,006,71229,070,061 - 29,070,132
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAcot10, LOC100040302
Downstream geneCdh12, LOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041I01.bB6Ng01-041I01.g
ACCDH868150DH868151
length1,053349
definitionDH868150|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I01, 5' end.DH868151|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,005,660 - 21,006,712)(29,070,061 - 29,070,132)
sequence
gaattcaactcctcagttagaacatgtgcatatttgtagtactgcttagg
agtaagaatgaaccttcaacacagcctgggaaagtgaatctgctcttcag
ggatagacatacagaatttggtcaatcaaggagtatgcaggctccatacc
tgaacttagataaaaagctataagacgtatagatgaagaaagaaggtctg
tcatttggaattatattagcgatgatatggaggtaaattttattatgcct
catctgcatatagaagtaaaaccttaaattgtccatttccaccaagtcta
gaagaatatagtagatataaatgaaaatataagatataataaacaaacct
atatagatgtttctttactattaattagttttactattaattaacattta
ttttatgagagagtattttacacagcccatgtaggtcttgaacttcattt
gagggcgtcaaatgtttttccatttaaattttcatagagcaaactgtttc
tgtcagttacaacttaatatataactgatgaatatttatactcaaagctg
caactctaaattccattactttatgggttaaagtttctataagaattttg
agggtaacaaaattgtacataaattttgagactatgttgacataatacct
gaaaaattacatctccaacatttaggagagttcttcaaagtccaaaaata
tcatgtctctatgcctcttccaacttacttttattttattcaattctaat
tcacttagttcttatttttactaactgcaattttcaaaaatttaaggaaa
gcatttcaaagtgttcctagtttcaggagcattttccctatagcaatgtt
aaatatattttaacaaaataatagtagttgattcacctttgggatctatg
agtttcatacccatggatctcattaaaatttgcagtaccacaatgttgtc
ctccttttgagtgggtgttaaatctataaggagctaccacatgaaattca
tggtcactctaaaccattactgtatatatcttgcttctctatccattgtg
gca
ccctgttttggggtatatgatcttcacaagaccaagggcctctcatctca
ttaatggctgactaggccatcctctgctacatatgcaactaaagacatat
ttctgtggggtactggttagctcatattgttggtcctcctatagggttgc
cgacccctttagcttcttggttactttctctagctccttctttagggacc
ctgtgttccatccaacagatgactgtgagcatccacttctgtattggcca
agcataggaatagcctcacaagagagagctatatcagggtcctgtcagca
aaatcttgctggcatatgcaatagtgtctgggattggtggttgtatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21005660_21006712
seq2: B6Ng01-041I01.b_43_1095

seq1  GAATTCAACTCCTCAGTTAGAACATGTGCATATTTGTAGTACTGCTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCCTCAGTTAGAACATGTGCATATTTGTAGTACTGCTTAGG  50

seq1  AGTAAGAATGAACCTTCAACACAGCCTGGGAAAGTGAATCTGCTCTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAATGAACCTTCAACACAGCCTGGGAAAGTGAATCTGCTCTTCAG  100

seq1  GGATAGACATACAGAATTTGGTCAATCAAGGAGTATGCAGGCTCCATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGACATACAGAATTTGGTCAATCAAGGAGTATGCAGGCTCCATACC  150

seq1  TGAACTTAGATAAAAAGCTATAAGACGTATAGATGAAGAAAGAAGGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTAGATAAAAAGCTATAAGACGTATAGATGAAGAAAGAAGGTCTG  200

seq1  TCATTTGGAATTATATTAGCGATGATATGGAGGTAAATTTTATTATGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGGAATTATATTAGCGATGATATGGAGGTAAATTTTATTATGCCT  250

seq1  CATCTGCATATAGAAGTAAAACCTTAAATTGTCCATTTCCACCAAGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCATATAGAAGTAAAACCTTAAATTGTCCATTTCCACCAAGTCTA  300

seq1  GAAGAATATAGTAGATATAAATGAAAATATAAGATATAATAAACAAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATATAGTAGATATAAATGAAAATATAAGATATAATAAACAAACCT  350

seq1  ATATAGATGTTTCTTTACTATTAATTAGTTTTACTATTAATTAACATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATGTTTCTTTACTATTAATTAGTTTTACTATTAATTAACATTTA  400

seq1  TTTTATGAGAGAGTATTTTACACAGCCCATGTAGGTCTTGAACTTCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAGAGAGTATTTTACACAGCCCATGTAGGTCTTGAACTTCATTT  450

seq1  GAGGGCGTCAAATGTTTTTCCATTTAAATTTTCATAGAGCAAACTGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGTCAAATGTTTTTCCATTTAAATTTTCATAGAGCAAACTGTTTC  500

seq1  TGTCAGTTACAACTTAATATATAACTGATGAATATTTATACTCAAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTTACAACTTAATATATAACTGATGAATATTTATACTCAAAGCTG  550

seq1  CAACTCTAAATTCCATTACTTTATGGGTTAAAGTTTCTATAAGAATTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTAAATTCCATTACTTTATGGGTTAAAGTTTCTATAAGAATTTTG  600

seq1  AGGGTAACAAAATTGTACATAAATTTTGAGACTATGTTGACATAATACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAACAAAATTGTACATAAATTTTGAGACTATGTTGACATAATACCT  650

seq1  GAAAAATTACATCTCCAACATTTAGGAGAGTTCTTCAAAGTCCAAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTACATCTCCAACATTTAGGAGAGTTCTTCAAAGTCCAAAAATA  700

seq1  TCATGTCTCTATGCCTCTTCCAACTTACTTTTATTTTATTCAATTCTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTCTATGCCTCTTCCAACTTACTTTTATTTTATTCAATTCTAAT  750

seq1  TCACTTAGTTCTTA-TTTTACTAACTGCAA-TTTCAAAAATTTAAGGAAA  798
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  TCACTTAGTTCTTATTTTTACTAACTGCAATTTTCAAAAATTTAAGGAAA  800

seq1  GCA-TTCAAAGTGTTCCTAGTTTCAGGAGCATTTTCCCTATAGCAATGTT  847
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCAAAGTGTTCCTAGTTTCAGGAGCATTTTCCCTATAGCAATGTT  850

seq1  AAATATA-TTTAACAAAATAATAGTAGTTGATTCACCCTTGGGATCTATG  896
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  AAATATATTTTAACAAAATAATAGTAGTTGATTCACCTTTGGGATCTATG  900

seq1  AGTTTCATACCCATGGATTCTTATTAAAATTTGCAGTACCACAAATGTTG  946
      ||||||||||||||||| ||| |||||||||||||||||||| |||||||
seq2  AGTTTCATACCCATGGA-TCTCATTAAAATTTGCAGTACCAC-AATGTTG  948

seq1  TCCTCCTTTTGAGTGGGTGTTAAATCTATAAGGAAGCTACCACATGATAT  996
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  TCCTCCTTTTGAGTGGGTGTTAAATCTATAAGG-AGCTACCACATGAAAT  997

seq1  TCAT-GTCACTCCTATACCCATTACTGTATATATCTTGCTTCTCTAGCCA  1045
      |||| |||||| ||| | |||||||||||||||||||||||||||| |||
seq2  TCATGGTCACT-CTA-AACCATTACTGTATATATCTTGCTTCTCTATCCA  1045

seq1  TTGTTGCA  1053
      |||| |||
seq2  TTGTGGCA  1053

seq1: chr15_29070061_29070132
seq2: B6Ng01-041I01.g_354_424 (reverse)

seq1  CATAAACAACCACCAAAACCCAAACACTATTGCATATGCCAGCAAGATTT  50
      |||| ||||||||| || |||| |||||||||||||||||||||||||||
seq2  CATATACAACCACC-AATCCCAGACACTATTGCATATGCCAGCAAGATTT  49

seq1  TGCTGACAGGACCCTGATATAG  72
      ||||||||||||||||||||||
seq2  TGCTGACAGGACCCTGATATAG  71