BAC Information

Click to search

BAC

Clone NameB6Ng01-041J24
Chromosome15 (Build37)
Map Location 45,260,328 - 45,261,484
singlet/doubletsinglet
Overlap genenone
Upstream geneEny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041J24.bB6Ng01-041J24.g
ACCDH868233DH868234
length1,1881,140
definitionDH868233|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J24, 5' end.DH868234|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagcccccttatttaaaggggttattttaat
ttctggagtcttccttcttgagttctttatatatattggatattagtccc
ctctctgatataggataggtaaagatcctttcccaatctgttgctggcct
ttttgtcttattgagagtgtcttttggcttacagaagctttgcattttca
tgaggtcccatttgtcaattctcaaccttacagcacaagccattgctgtt
ctcttcaggaattttgcccctgtgcccatatcttcgaggattttccccac
tttcgcctctataagtttcagtgtctctggttttatgtggagctccttga
tccacttagatttgaccttagtacaaggagataggaatggatcaattcgc
attcttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtctttttttccactggatggttttagctcctgtgttgaagatcagg
tgaccataggtgtgtgggttcatttctaggtcttcaattctattccattt
gtctacttgtctgccactataccagtaccatgacgtttttatcacaattg
ctctgtagtaaagctttagatcaggcatggtgattccaccagagattctt
ttatccttgagaagagtttttggtatcctaggttttttgttattacagat
gaatttgcagattgctctttctaattcgttgaagaattgagttggaattt
tgatggtgattgcattgaatctgtagattgcttttggcaagatagccctt
ttacaatgttgatcctgccaatccatgagcatgggggatctttccatctt
ctgagatcttctttatttctttcttcagagacttgaagttcttatcatac
agatctttcacttccttagtagagtcatgccaagatatttcacatcattt
gtgactattgagaaggtgtggtttccctaaatcctttctcagcctgttat
tcttgtgtacggaaggccattgactggttgagttaatttatatcagctca
tcacctaagctgttaacggtttagggtttctgggggattaaagccctaaa
tagcttcaaacttggaaaggaatttgactctcttccatttacctagtaac
cttgtgccatggctcggtggagacttcaacacagtgat
gaattccaggtcattctgtacaagaaaataattggcagaaatacaagcaa
ctatataaaccagataagaaattgataaagatgaaggctataactttaaa
taatcaataagtactgaaatcttaatttgcctataattcatgcaacaatt
atgagaggtctcagtcacatgggtgatcctgaaaggtaaataaaatatta
gatttttttcaaatatcatgtaaacaatgctttttacagagtacaaaatc
aaaatctagatattaaatttttctttctacttttttgaggatattcagac
aagacaaaatatcaggtcggcttccacaggtaacagttactctttgactt
ccctctagattggaagtagaaaaaaaacctaccatataacaactagtcat
attaagaatgaaatttgaaatcatatagagtgtaatgctgaaaactttct
ttattcttttttattaacagatgcctaataatatgttgaacacatatgta
gtgatgtagttgcttaaacacatacctggtaatataatttttacaataac
tacagaaaagtaacaaacctgaattctagatcctatcctaagtaaaagtc
ttactgtttaaaaactagaaatcctttttgcacacctccagtaatctatt
ttgcacatgaaataaaatcctgtgaatcaaagttgaatgcccagcatacc
ttggaaaaggcagaattacaaatagtgtggaagcctagcagctcatgatc
caaattatactttctgtaaaatgtgatatgtagacccttttattttctga
caaccattaaataaaataaagtccctcaagtgagaggtgcctgctagcaa
atatgccccaaacagtagtacattctctggtgccttttctgctgtgtcag
agtccatatggaaatactctaaaatggtttttatgaattcgttcctttgt
tcacatttgcaaatcttgtctgtttgatctttttctggctaactcaataa
agtatttgataggtctgcatttgttctacagatatcaaggtgtcatttat
tgtactcttgtcataatgtcccagaattgtcacctaaatgaatgaaaagg
caggtgcctaatggagttgaagcatgcattccattctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_45260328_45261484
seq2: B6Ng01-041J24.g_67_1206 (reverse)

seq1  GACAGAATGAAATGCATGCTTCACATTCATTAAAGCCAACTG-CTGTTCA  49
      ||||||||| |||||||||||||  | ||||  || || ||| || ||||
seq2  GACAGAATGGAATGCATGCTTCAACTCCATT--AGGCACCTGCCTTTTCA  48

seq1  TCTATTTTAGGTGACAAATTCTGGGACATTATGACAAGAGTAC-ATAGAT  98
      | |  |||||||||| ||||||||||||||||||||||||||| ||| ||
seq2  T-TCATTTAGGTGAC-AATTCTGGGACATTATGACAAGAGTACAATAAAT  96

seq1  GACACCTTTTGATATTCTTGTAAGAACAAATTGCAGACCTATCAAATAAC  148
      ||||||  |||||||   ||| |||||||| |||||||||||||||| ||
seq2  GACACC--TTGATAT--CTGT-AGAACAAA-TGCAGACCTATCAAAT-AC  139

seq1  TTTATTGAGTTAAGCCAGAAAAAGATCAAACAGAACAAGATTTGCAAAAT  198
      ||||||||||| ||||||||||||||||||||| ||||||||||| ||||
seq2  TTTATTGAGTT-AGCCAGAAAAAGATCAAACAG-ACAAGATTTGC-AAAT  186

seq1  GTGAACAAAGGAACGAATTCATAAAAACCATTTTTAGAGTATTTCCATAT  248
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGAACAAAGGAACGAATTCATAAAAACCA-TTTTAGAGTATTTCCATAT  235

seq1  GGACTCTGACACAGCAGAAAAGGCACCAGAGAATGTACTACTGTTTGGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTGACACAGCAGAAAAGGCACCAGAGAATGTACTACTGTTTGGGG  285

seq1  CATATTTTGCTAGCAGGCACCTCTCACTTGAGGGAACTTTATTTTATTTA  348
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATA-TTTGCTAGCAGGCACCTCTCACTTGAGGG-ACTTTATTTTATTTA  333

seq1  ATGGTTGTCAGAAAATAAAAGGGTCTACATTATCACATTTTACAGAAAGT  398
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGGTTGTCAGAAAATAAAAGGGTCTACA-TATCACATTTTACAGAAAGT  382

seq1  ATAATTTGGATCATGAGCTGCTAGGCTTTCCACACTATTTGTAATTCTGC  448
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATAATTTGGATCATGAGCTGCTAGGC-TTCCACACTATTTGTAATTCTGC  431

seq1  CTTTTCCAAGGTATGCTGGGCATTCAACTTTGATTCACAGGATTTTATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAAGGTATGCTGGGCATTCAACTTTGATTCACAGGATTTTATTT  481

seq1  CATGTGCAAAATAGATTACTGGAGGTGTGCAAAAAGGATTTCTAGTTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAAAATAGATTACTGGAGGTGTGCAAAAAGGATTTCTAGTTTTT  531

seq1  AAACAGTAAGACTTTTACTTAGGATAGGATCTAGAATTCAGGTTTGTTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAAGACTTTTACTTAGGATAGGATCTAGAATTCAGGTTTGTTAC  581

seq1  TTTTCTGTAGTTATTGTAAAAATTATATTACCAGGTATGTGTTTAAGCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTAGTTATTGTAAAAATTATATTACCAGGTATGTGTTTAAGCAA  631

seq1  CTACATCACTACATATGTGTTCAACATATTATTAGGCATCTGTTAATAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCACTACATATGTGTTCAACATATTATTAGGCATCTGTTAATAAA  681

seq1  AAAGAATAAAGAAAGTTTTCAGCATTACACTCTATATGATTTCAAATTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAAAGAAAGTTTTCAGCATTACACTCTATATGATTTCAAATTTC  731

seq1  ATTCTTAATATGACTAGTTGTTATATGGTAGGTTTTTTTTCTACTTCCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAATATGACTAGTTGTTATATGGTAGGTTTTTTTTCTACTTCCAA  781

seq1  TCTAGAGGGAAGTCAAAGAGTAACTGTTACCTGTGGAAGCCGACCTGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGGGAAGTCAAAGAGTAACTGTTACCTGTGGAAGCCGACCTGATA  831

seq1  TTTTGTCTTGTCTGAATATCCTCAAAAAAGTAGAAAGAAAAATTTAATAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTGTCTGAATATCCTCAAAAAAGTAGAAAGAAAAATTTAATAT  881

seq1  CTAGATTTTGATTTTGTACTCTGTAAAAAGCATTGTTTACATGATATTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTTGATTTTGTACTCTGTAAAAAGCATTGTTTACATGATATTTG  931

seq1  AAAAAAATCTAATATTTTATTTACCTTTCAGGATCACCCATGTGACTGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCTAATATTTTATTTACCTTTCAGGATCACCCATGTGACTGAG  981

seq1  ACCTCTCATAATTGTTGCATGAATTATAGGCAAATTAAGATTTCAGTACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCATAATTGTTGCATGAATTATAGGCAAATTAAGATTTCAGTACT  1031

seq1  TATTGATTATTTAAAGTTATAGCCTTCATCTTTATCAATTTCTTATCTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTATTTAAAGTTATAGCCTTCATCTTTATCAATTTCTTATCTGG  1081

seq1  TTTATATAGTTGCTTGTATTTCTGCCAATTATTTTCTTGTACAGAATGAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAGTTGCTTGTATTTCTGCCAATTATTTTCTTGTACAGAATGAC  1131

seq1  CTGGAATTC  1157
      |||||||||
seq2  CTGGAATTC  1140