BAC Information

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BAC

Clone NameB6Ng01-043D24
Chromosome15 (Build37)15 (Build37)
Map Location 101,586,319 - 101,586,82510,949,302 - 10,950,429
singlet/doubletsingletsinglet
Overlap geneKrt74
Upstream geneSlc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71
Downstream geneKrt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043D24.bB6Ng01-043D24.g
ACCDH869368DH869369
length1,1431,124
definitionDH869368|Mus musculus domesticus DNA, BAC clone: B6Ng01-043D24, 5' end.DH869369|Mus musculus domesticus DNA, BAC clone: B6Ng01-043D24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,586,319 - 101,586,825)(10,949,302 - 10,950,429)
sequence
gaattcttacagtgttgttccagtgaggagtccaagatcccatactgcca
gccattgtaaataattttctgtcttattcttttcatggagaacattgctc
acaccagtctctgtacagcagcataattctcactacccctgcccacattc
ctagagttacttagctgtcagtggccttcaagaatgcttacatgcctctt
ggcatcttcacagcactttattctgtaagatatgtccagcgtttttcact
agaagagccttctatctaatatcccagcagatggaaaagtcagtcccata
accagctactagtatgtgttcctctgggagctaggaaaccaagggaacaa
ctgcaaacaagacaatctctttgctagggcagactcaaatgggccttctt
cttagcactttgtagtctcgcacaaatgtagacccgatgtgggaaatagc
tgcagcagatgaaagagcattagaagaacttgccttttctggattgtcct
gcaagacactctgtgaaacattaagcatcctattctggcttaagccttca
gtgccatatgcaaagccttaaggtctgtatgtgcttttaaattcttgcca
ttattgtacaaccactatggaaatcagtctggcggttcctcagaaaactg
gatatagtactaccggaggatccagcaatacctctcctgggcatatatcc
agaagatgccccaactggtaagaaggacacatgctccactatgttcatag
cagccttatttataatagccagaagctggaaggaacccagatgcccctca
acagaggaatggatacagaaaatgtggtacatctacacaatggagtacta
ctcagctattaaaaagaatgaatttatgaaattcctagccaaatggatgg
acctggagggcatcatcctgagtgaggtacacattcacaaaggaactcac
acatatgtactcactgataagtggatatagcccaaaacctaagataccca
agacatagatacaatttcctaaacacatgaaactcaagaaaaatgaagac
taaagttgtgaacacttatgcccctccttagagtgggacaaaacaccctt
ggaaggagttacagagacaaggtttgagctgaaattaaaagat
gaattctcattcttggttaaaaatactgagtatttatatccccatctttt
acagaaatactaagctcaaatctgaagtctcacatttccgtttttggaag
ggaagagaaattaggttaacaatgaagcaggctgaaaattaggtaggagg
cggagggattcattaatatttgcagcgaggcagaactcatgcttgccagg
tttactttcgagattgtacagttttgtgggaaggagaaataaaaggcaga
gaaagctcttactttgaagaaagaaaaccagctgccattccctggacaat
atctacgtttctctagaagtaattttgcacagttgttacaatcagctttt
atttttagatattgtaatctgcacacagagtatttcccctaactatgaga
gaagagaatgcatatatttttatactaattaagtaaataagtatatattc
gtcatccatgggtcaaatactgcagggtggataaagttagcagggtggat
aaagatgctgcgtgcctgtgatcccagcactctggaggggaaggcaagag
gactgggaaggtcatcctcggctatgtggcaaaatcagggccagcctgag
ctacatgaaatcctgtctcaaaacaggaaacagaagcaaggacgatgaaa
atgaaagtgtcagttacgggatgaatccaaaattgttaagtcagatttct
tcaacaaagaaaaaatatcgcattgctttgagttataaaacgatatgtta
ttatagtgaaaacagacaatctcaggatactgtctgacaactctactaat
tagatctcaatttccttatgtcaagactcagattttaaaaccaccgagaa
gaaagaccatcaaccacctcagatgacattcatatttccattgtccttag
ggaggcgattgcttaatgttcaaagtttctttcttctcttacgtgacaag
atgctggacattttttatgttttcagttctggggatatttaaaattctaa
ctctctcatgcttacttgaaaccaaatgatgatgatggatggtggacgat
gatggcgatgatgatgaatacaacaggtttgagccctgtagttaaatgta
tgaattaagtaaggaatctggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101586319_101586825
seq2: B6Ng01-043D24.b_688_1189 (reverse)

seq1  ATCTTTTTATCTCAGCTCCAAACTTTGTCTCTGTACCTCCTTCCAAGGGT  50
      ||||||| || |||||| ||||| ||||||||||| ||||||||||||||
seq2  ATCTTTTAATTTCAGCT-CAAACCTTGTCTCTGTAACTCCTTCCAAGGGT  49

seq1  GTTTTGTTCCCACTTCTAAGGAGGGGCAT-AGTGTCCAC-ACTTCAGTCT  98
      |||||| |||||| ||||||||||||||| ||||| ||| |||| |||||
seq2  GTTTTG-TCCCAC-TCTAAGGAGGGGCATAAGTGTTCACAACTTTAGTCT  97

seq1  TCATTTTTCTTGAGTTTCATGTGTTTAGGAAATTGTATCTTATATCTTGG  148
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  TCATTTTTCTTGAGTTTCATGTGTTTAGGAAATTGTATC-TATGTCTTGG  146

seq1  ATATCCTAGGTTTTGGGCTAATATCCACTTATCAGTGAGTACATATTGTG  198
       |||| ||||||||||||| ||||||||||||||||||||||||| ||||
seq2  GTATCTTAGGTTTTGGGCT-ATATCCACTTATCAGTGAGTACATA-TGTG  194

seq1  TGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCCTCCAGGT  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAGTTCCTTTGTGAATGTG-TACCTCACTCAGGATGATGCCCTCCAGGT  243

seq1  CCATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAG  293

seq1  TAGTACTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGT  343

seq1  TGAGGGGCATCTGGGTTCCTTCCAGCTTCTGGCTATTATAAATAAGGCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCATCTGGGTTCCTTCCAGCTTCTGGCTATTATAAATAAGGCTG  393

seq1  CTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCT  443

seq1  GGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATATC  493

seq1  CAGTTTTCT  507
      |||||||||
seq2  CAGTTTTCT  502

seq1: chr15_10949302_10950429
seq2: B6Ng01-043D24.g_69_1192

seq1  GAATTCTCATTCTTGGTTAAAAATACTGAGTATTTATATCCCCATCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTCTTGGTTAAAAATACTGAGTATTTATATCCCCATCTTTT  50

seq1  ACAGAAATACTAAGCTCAAATCTGAAGTCTCACATTTCCGTTTTTGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATACTAAGCTCAAATCTGAAGTCTCACATTTCCGTTTTTGGAAG  100

seq1  GGAAGAGAAATTAGGTTAACAATGAAGCAGGCTGAAAATTAGGTAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAAATTAGGTTAACAATGAAGCAGGCTGAAAATTAGGTAGGAGG  150

seq1  CGGAGGGATTCATTAATATTTGCAGCGAGGCAGAACTCATGCTTGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGGATTCATTAATATTTGCAGCGAGGCAGAACTCATGCTTGCCAGG  200

seq1  TTTACTTTCGAGATTGTACAGTTTTGTGGGAAGGAGAAATAAAAGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTCGAGATTGTACAGTTTTGTGGGAAGGAGAAATAAAAGGCAGA  250

seq1  GAAAGCTCTTACTTTGAAGAAAGAAAACCAGCTGCCATTCCCTGGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTCTTACTTTGAAGAAAGAAAACCAGCTGCCATTCCCTGGACAAT  300

seq1  ATCTACGTTTCTCTAGAAGTAATTTTGCACAGTTGTTACAATCAGCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACGTTTCTCTAGAAGTAATTTTGCACAGTTGTTACAATCAGCTTTT  350

seq1  ATTTTTAGATATTGTAATCTGCACACAGAGTATTTCCCCTAACTATGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGATATTGTAATCTGCACACAGAGTATTTCCCCTAACTATGAGA  400

seq1  GAAGAGAATGCATATATTTTTATACTAATTAAGTAAATAAGTATATATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAATGCATATATTTTTATACTAATTAAGTAAATAAGTATATATTC  450

seq1  GTCATCCATGGGTCAAATACTGCAGGGTGGATAAAGTTAGCAGGGTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCATGGGTCAAATACTGCAGGGTGGATAAAGTTAGCAGGGTGGAT  500

seq1  AAAGATGCTGCGTGCCTGTGATCCCAGCACTCTGGAGGGGAAGGCAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGCTGCGTGCCTGTGATCCCAGCACTCTGGAGGGGAAGGCAAGAG  550

seq1  GACTGGGAAGGTCATCCTCGGCTATGTGGCAAAATCAGGGCCAGCCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGAAGGTCATCCTCGGCTATGTGGCAAAATCAGGGCCAGCCTGAG  600

seq1  CTACATGAAATCCTGTCTCAAAACAGGAAACAGAAGCAAGGACGATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGAAATCCTGTCTCAAAACAGGAAACAGAAGCAAGGACGATGAAA  650

seq1  ATGAAAGTGTCAGTTACGGGATGAATCCAAAATTGTTAAGTCAGATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTGTCAGTTACGGGATGAATCCAAAATTGTTAAGTCAGATTTCT  700

seq1  TCAACAAAGAAAAAATATCGCATTGCTTTGAGTTATAAAACGATATGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAGAAAAAATATCGCATTGCTTTGAGTTATAAAACGATATGTTA  750

seq1  TTATAGTGAAAACAGACAATCTCAGGATACTGTCTGACAACTCTACTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTGAAAACAGACAATCTCAGGATACTGTCTGACAACTCTACTAAT  800

seq1  TAGATCTCAATTTCCTTATGTCAAGACTCAGAATTTTAAAACCACCGAGA  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAGATCTCAATTTCCTTATGTCAAGACTCAG-ATTTTAAAACCACCGAGA  849

seq1  AGAAAGAACCATCAACCACCTCAGATGACATTCATATTTCCATTGTCCTT  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAG-ACCATCAACCACCTCAGATGACATTCATATTTCCATTGTCCTT  898

seq1  AGGGAGGCCGATTGCTTAATGTTCCAAGGTTTCTTTCTTCTCTTACGTGA  950
      ||||||| ||||||||||||||| ||| ||||||||||||||||||||||
seq2  AGGGAGG-CGATTGCTTAATGTT-CAAAGTTTCTTTCTTCTCTTACGTGA  946

seq1  CAAGATGCTGGACACTTTTTATGTTTTCAGTTCTGTGGATATTTTAAAAA  1000
      |||||||||||||| |||||||||||||||||||| ||||||||  ||||
seq2  CAAGATGCTGGACATTTTTTATGTTTTCAGTTCTGGGGATATTT--AAAA  994

seq1  TTCTAACTCTCTCATGCTTAC-TGAAACCAAATGATGATGAT-GATGGT-  1047
      ||||||||||||||||||||| |||||||||||||||||||| |||||| 
seq2  TTCTAACTCTCTCATGCTTACTTGAAACCAAATGATGATGATGGATGGTG  1044

seq1  GACGATGATGGCGATGATGATGATAACAACAGGTTGAAGCCCTGATGTT-  1096
      |||||||||||||||||||||||  ||||||||||  |||||||  ||| 
seq2  GACGATGATGGCGATGATGATGAATACAACAGGTTTGAGCCCTGTAGTTA  1094

seq1  AATGTATGAATCTAAAGTAAGGAATCTGGGGG  1128
      ||||||||||  | ||||||||||||||||||
seq2  AATGTATGAA--TTAAGTAAGGAATCTGGGGG  1124