BAC Information

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BAC

Clone NameB6Ng01-045M01
Chromosome15 (Build37)
Map Location 99,341,722 - 99,506,124
singlet/doubletdoublet
Overlap geneFaim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2
Upstream gene2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik
Downstream geneSmarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045M01.bB6Ng01-045M01.g
ACCDH871119DH871120
length89164
definitionDH871119|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M01, 5' end.DH871120|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,341,722 - 99,342,614)(99,506,061 - 99,506,124)
sequence
gaattcaattcccagcaatcacatgatggctcacaatggtatgctcataa
acataaaataaaaataaattttgggaaaaaaaaagagctcaggtggaaaa
agtcagccagggtgggtatggaagtggaggcatctggagtctctgccaga
gggccatgatggccctgcctctggaggccagagcagcacctttccggcct
gtgctcacccccactgtgaacgcaaacagtcacaagtataaggtgcatta
ccctttgtggatcccttccagaaacctttctagaaggttcctggaaacaa
aggcatcccatcagctcaacgtgggtcaataaagggtgctttgaagttct
aggactccttcctgtagccccctcccatcctagagacacagaggccccca
ggccagctctggcccctcccttcgtcaacaggatcctgggaagagccaag
gagtcaatctagacatcctagacttgatgccaactgcccagaggctgggg
ctgggcagcatggaagtgtgttagaggggataaggaataccctccaaccc
tggcagacaagaggccatgggagaccagctaccggatgtggccggagaga
atattgttgagtccctaatagatccaactagttctttcctgtgttcttag
gatttgaaccacctgtcacgtctccaatctgttccccagcattggtggct
tcagctcctacccagtaggcactcctttgggcaggcaggatgccaatcgg
agtccctggaagagccctccggtgggtgggcatttgtgagatggggtggg
ggaatctgctcccaccccgccgtggtcaattccctcctgcacggctagcc
aaattctggctctatggactagctggtccctcagagtgccc
tccctcaaacagtacaggccaatcacatttcattacttgtgtgtgtgtgt
gtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_99341722_99342614
seq2: B6Ng01-045M01.b_44_934

seq1  GAATTCAATTCCCAGCAATCACATGATGGCTCACAATGGTATGCTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCAATCACATGATGGCTCACAATGGTATGCTCATAA  50

seq1  ACATAAAATAAAAATAAATTTTGGGAAAAAAAAAGAGCTCAGGTGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATAAAAATAAATTTTGGGAAAAAAAAAGAGCTCAGGTGGAAAA  100

seq1  AGTCAGCCAGGGTGGGTATGGAAGTGGAGGCATCTGGAGTCTCTGCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCAGGGTGGGTATGGAAGTGGAGGCATCTGGAGTCTCTGCCAGA  150

seq1  GGGCCATGATGGCCCTGCCTCTGGAGGCCAGAGCAGCACCTTTCCGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATGATGGCCCTGCCTCTGGAGGCCAGAGCAGCACCTTTCCGGCCT  200

seq1  GTGCTCACCCCCACTGTGAACGCAAACAGTCACAAGTATAAGGTGCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCACCCCCACTGTGAACGCAAACAGTCACAAGTATAAGGTGCATTA  250

seq1  CCCTTTGTGGATCCCTTCCAGAAACCTTTCTAGAAGGTTCCTGGAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGTGGATCCCTTCCAGAAACCTTTCTAGAAGGTTCCTGGAAACAA  300

seq1  AGGCATCCCATCAGCTCAACGTGGGTCAATAAAGGGTGCTTTGAAGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCCCATCAGCTCAACGTGGGTCAATAAAGGGTGCTTTGAAGTTCT  350

seq1  AGGACTCCTTCCTGTAGCCCCCTCCCATCCTAGAGACACAGAGGCCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCCTTCCTGTAGCCCCCTCCCATCCTAGAGACACAGAGGCCCCCA  400

seq1  GGCCAGCTCTGGCCCCTCCCTTCGTCAACAGGATCCTGGGAAGAGCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTCTGGCCCCTCCCTTCGTCAACAGGATCCTGGGAAGAGCCAAG  450

seq1  GAGTCAATCTAGACATCCTAGACTTGATGCCAACTGCCCAGAGGCTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAATCTAGACATCCTAGACTTGATGCCAACTGCCCAGAGGCTGGGG  500

seq1  CTGGGCAGCATGGAAGTGTGTTAGAGGGGATAAGGAATACCCTCCAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGCATGGAAGTGTGTTAGAGGGGATAAGGAATACCCTCCAACCC  550

seq1  TGGCAGACAAGAGGCCATGGGAGACCAGCTACCGGATGTGGCCGGAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACAAGAGGCCATGGGAGACCAGCTACCGGATGTGGCCGGAGAGA  600

seq1  ATATTGTTGAGTCCCTAATAGATCCAACTAGTTCTTTCCTGTGTTCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTGAGTCCCTAATAGATCCAACTAGTTCTTTCCTGTGTTCTTAG  650

seq1  GATTTGAACCACCTGTCACGTCTCCAATCTGTTCCCCAGCATTGGTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAACCACCTGTCACGTCTCCAATCTGTTCCCCAGCATTGGTGGCT  700

seq1  TCAGCTCCTACCCAGTAGGCACTCCTTTGGGCAGGCAGGATGCCAATCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTACCCAGTAGGCACTCCTTTGGGCAGGCAGGATGCCAATCGG  750

seq1  AGTCCCTGGAAGAGCCCTCCGGTGGGTGGGCATTTGTGAGATGGGGT-GG  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTCCCTGGAAGAGCCCTCCGGTGGGTGGGCATTTGTGAGATGGGGTGGG  800

seq1  GGAATCTGCTCCTACGCCGCCGTGGTCAATTCCCCTCCTGCACGGCTAGC  849
      |||||||||||| || ||||||||||||||| ||||||||||||||||||
seq2  GGAATCTGCTCCCACCCCGCCGTGGTCAATT-CCCTCCTGCACGGCTAGC  849

seq1  CAAATTCTGCCTCTTTGGACTTAGCTGGTCCCCCAGGAGTGCCC  893
      ||||||||| |||| ||||| ||||||||||| || ||||||||
seq2  CAAATTCTGGCTCTATGGAC-TAGCTGGTCCCTCA-GAGTGCCC  891

seq1: chr15_99506061_99506124
seq2: B6Ng01-045M01.g_72_135 (reverse)

seq1  ACACACACACACACACACACACACACAAGTAATGAAATGTGATTGGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACAAGTAATGAAATGTGATTGGCCTG  50

seq1  TACTGTTTGAGGGA  64
      ||||||||||||||
seq2  TACTGTTTGAGGGA  64