BAC Information

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BAC

Clone NameB6Ng01-045O20
Chromosome15 (Build37)
Map Location 83,531,003 - 83,619,114
singlet/doubletdoublet
Overlap geneScube1, Mpped1
Upstream geneLOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12
Downstream gene4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045O20.bB6Ng01-045O20.g
ACCDH871242DH871243
length990774
definitionDH871242|Mus musculus domesticus DNA, BAC clone: B6Ng01-045O20, 5' end.DH871243|Mus musculus domesticus DNA, BAC clone: B6Ng01-045O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,531,003 - 83,531,998)(83,618,348 - 83,619,114)
sequence
gaattcctgcgtgcaaggctagcaaatcccaatgacctttcaacccctcg
gccccgtttgcggcagggattctgaagggatcacatagggaagcagagaa
gaaaatgttctctgcctagactcactccggattctgatggcaaatgcaga
taggtggctgagcctcgggagtaaaactaacgctggccggttgaccatta
tgtctgtactcagtccaggcccttcggcttaagaccgtcatttcactcag
cctgtcgacatagtggcacactgacccatatcgagaccgtgacaatacta
gcagccgtaacagctttctcccacagacaggacagaagagaccctgatag
gcctataacctgctcacagccaggcacctgacaatcacacatcgtgtcct
cctgctctaacggctatgtttctgcgggtcctggcagaagagagttgggg
acaggtggagtctgttctgagagccgtgtgtggctcactagttgctgtcc
cttgggttacagactgtgaaacacctccatgtcccttcctcaaaagattc
tgaggccttagctccagaactgtgagtgtggcctccggaggaataacggt
cgtcatagttgcatcagttacagttggctgtcttctgtgccagctacttt
ctttttctgattactatgatctaaagcagcttaggagaggatcctgtcag
gaggaccttggcagcaggggtttgaggaagcagccagtcatgtttcatcc
acagccagaacacagagacaagcctctctgctcagctccctttctcttct
tcatcagccaggacccagcccatggaacagtgaccctaaaatactatggc
cgctcaacaaactatacagactatccctcacagactactctgaggtgctc
ccagggtgaatctgaatccagccaagacggtattttactcagcacgttca
gatgatcttgggggtgaggaatggcagccattggccagtc
gaattcaccttatttaacaaatacatccccacccccaacttgctgtccct
gacccctttgcaaaataaattcgatagatgatagatagatagatagatag
atagatagatagatagataaaaataaaagtcttttccagaaaagactgaa
aacgtaaagaggtcccattcccacggaatatgtggtaaatgcatgtataa
acagaaaatgtgttttcagacagtagcctgcctccagaaaacagagctta
gaaacggggtagcatgcagtgagggtgctgtacattgcatgatcacaaaa
ggagaatctacaaatatgtcacctattaggagaggtgagtgacccagcca
tgccccctgccatggtcctcagaagcagaacattgctgatggtcctcctg
tcaacaggtctctggggcaaagaggtcacagggcgtgagttcaggtgatg
ctgtattgtgggatgctgggcacatcacctacagacttcctagtatgtgc
tagtctccccttggagtaatagagaggatggaaggagtcccctgtcttcc
tctccataaagccccagtaaagaaaatcaagtttgacagttctgggccta
gtccagcaccaattgacacatttccctccacttggggactggcttaagtc
ttgtcttctttctgagacagcctttctctggtgttgaccaggacaccggg
aagcagtcttgttgagacccctctgaatggaaaagctgactcctagaata
aaggtccattttcggctcctacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_83531003_83531998
seq2: B6Ng01-045O20.b_44_1033

seq1  GAATTCCTGCGTGCAAGGCTAGCAAATCCCAATGACCTTTCAACCCCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCGTGCAAGGCTAGCAAATCCCAATGACCTTTCAACCCCTCG  50

seq1  GCCCCGTTTGCGGCAGGGATTCTGAAGGGATCACATAGGGAAGCAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGTTTGCGGCAGGGATTCTGAAGGGATCACATAGGGAAGCAGAGAA  100

seq1  GAAAATGTTCTCTGCCTAGACTCACTCCGGATTCTGATGGCAAATGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTCTCTGCCTAGACTCACTCCGGATTCTGATGGCAAATGCAGA  150

seq1  TAGGTGGCTGAGCCTCGGGAGTAAAACTAACGCTGGCCGGTTGACCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGCTGAGCCTCGGGAGTAAAACTAACGCTGGCCGGTTGACCATTA  200

seq1  TGTCTGTACTCAGTCCAGGCCCTTCGGCTTAAGACCGTCATTTCACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTACTCAGTCCAGGCCCTTCGGCTTAAGACCGTCATTTCACTCAG  250

seq1  CCTGTCGACATAGTGGCACACTGACCCATATCGAGACCGTGACAATACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCGACATAGTGGCACACTGACCCATATCGAGACCGTGACAATACTA  300

seq1  GCAGCCGTAACAGCTTTCTCCCACAGACAGGACAGAAGAGACCCTGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCGTAACAGCTTTCTCCCACAGACAGGACAGAAGAGACCCTGATAG  350

seq1  GCCTATAACCTGCTCACAGCCAGGCACCTGACAATCACACATCGTGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAACCTGCTCACAGCCAGGCACCTGACAATCACACATCGTGTCCT  400

seq1  CCTGCTCTAACGGCTATGTTTCTGCGGGTCCTGGCAGAAGAGAGTTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTAACGGCTATGTTTCTGCGGGTCCTGGCAGAAGAGAGTTGGGG  450

seq1  ACAGGTGGAGTCTGTTCTGAGAGCCGTGTGTGGCTCACTAGTTGCTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGGAGTCTGTTCTGAGAGCCGTGTGTGGCTCACTAGTTGCTGTCC  500

seq1  CTTGGGTTACAGACTGTGAAACACCTCCATGTCCCTTCCTCAAAAGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTACAGACTGTGAAACACCTCCATGTCCCTTCCTCAAAAGATTC  550

seq1  TGAGGCCTTAGCTCCAGAACTGTGAGTGTGGCCTCCGGAGGAATAACGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCTTAGCTCCAGAACTGTGAGTGTGGCCTCCGGAGGAATAACGGT  600

seq1  CGTCATAGTTGCATCAGTTACAGTTGGCTGTCTTCTGTGCCAGCTACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATAGTTGCATCAGTTACAGTTGGCTGTCTTCTGTGCCAGCTACTTT  650

seq1  TCTTTTCTGATTACTATGATCTAAAGCAGCTTAGGAGAGGATCCTGTCAG  700
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTGATTACTATGATCTAAAGCAGCTTAGGAGAGGATCCTGTCAG  700

seq1  GAGGACC-TGGCAGCAGGGGTTTGAGGAAGCAGCCAGTCATGTTTCATCC  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTTGGCAGCAGGGGTTTGAGGAAGCAGCCAGTCATGTTTCATCC  750

seq1  ACAGCCAGAACACAGAGACAAGCCTCTCTGCTCAGCCCCCTTTCTCTTCT  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAGCCAGAACACAGAGACAAGCCTCTCTGCTCAGCTCCCTTTCTCTTCT  800

seq1  TCATTCAGCCTGGGACCCCAGCCCATGGAACAGTGACCCCTAAATTTACT  849
      ||| |||||| ||   |||||||||||||||||||||||  |||  ||||
seq2  TCA-TCAGCCAGG--ACCCAGCCCATGGAACAGTGACCCTAAAA--TACT  845

seq1  ATGGCCGCTCAACAAACCTAATACAGACTATCCCTCACAGACATACTCAG  899
      |||||||||||||||||   |||||||||||||||||||||| ||||| |
seq2  ATGGCCGCTCAACAAAC--TATACAGACTATCCCTCACAGAC-TACTCTG  892

seq1  AGGTGCTCCCATGGTGAATCTGAACCCAGCCAAGACGGCAATTTTACCCA  949
      ||||||||||| |||||||||||| |||||||||||||  ||||||| ||
seq2  AGGTGCTCCCAGGGTGAATCTGAATCCAGCCAAGACGG-TATTTTACTCA  941

seq1  GCACG-TCAGATGATCATTGGGGTGAGGAAAGGCAGCCA-TGGCCAGTC  996
      ||||| |||||||||| | ||||||||||| |||||||| |||||||||
seq2  GCACGTTCAGATGATCTTGGGGGTGAGGAATGGCAGCCATTGGCCAGTC  990

seq1: chr15_83618348_83619114
seq2: B6Ng01-045O20.g_68_841 (reverse)

seq1  TTGTAGGAGCCGAAATGGGACCTTTATTCTAGGAGTCAGC-TTTCCATTC  49
      |||||||||||||||  ||||||||||||||||||||||| |||||||||
seq2  TTGTAGGAGCCGAAAATGGACCTTTATTCTAGGAGTCAGCTTTTCCATTC  50

seq1  AGAGGGGTCTCAACATGACCTGCTTCCCGGTGTCCTGGTCAACACCAGAG  99
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  AGAGGGGTCTCAACAAGA-CTGCTTCCCGGTGTCCTGGTCAACACCAGAG  99

seq1  AAAGGCTGTCTCAG-AAGAAGACAAGACTTAAGCCAGTCCCCAAGTGGAG  148
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGTCTCAGAAAGAAGACAAGACTTAAGCCAGTCCCCAAGTGGAG  149

seq1  GG-AATGTGTCAATTGGTGCTGGACTAGGCCCAGAACTGTCAAACTTGAT  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTGTCAATTGGTGCTGGACTAGGCCCAGAACTGTCAAACTTGAT  199

seq1  TTTC-TTACTGGGGCTTTATGGAGAGGAAGACAGGGGACTCCTTCCATCC  246
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTACTGGGGCTTTATGGAGAGGAAGACAGGGGACTCCTTCCATCC  249

seq1  TCTCTATTACTCCAAGGGGAGACTAGCACATACTAGGAAGTCTGTAGGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTACTCCAAGGGGAGACTAGCACATACTAGGAAGTCTGTAGGTG  299

seq1  ATGTGCCCAGCATCCCACAATACAGCATCACCTGAACTCACGCCCTGTGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCCAGCATCCCACAATACAGCATCACCTGAACTCACGCCCTGTGA  349

seq1  CCTCTTTGCCCCAGAGACCTGTTGACAGGAGGACCATCAGCAATGTTCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGCCCCAGAGACCTGTTGACAGGAGGACCATCAGCAATGTTCTG  399

seq1  CTTCTGAGGACCATGGCAGGGGGCATGGCTGGGTCACTCACCTCTCCTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGGACCATGGCAGGGGGCATGGCTGGGTCACTCACCTCTCCTAA  449

seq1  TAGGTGACATATTTGTAGATTCTCCTTTTGTGATCATGCAATGTACAGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGACATATTTGTAGATTCTCCTTTTGTGATCATGCAATGTACAGCA  499

seq1  CCCTCACTGCATGCTACCCCGTTTCTAAGCTCTGTTTTCTGGAGGCAGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTGCATGCTACCCCGTTTCTAAGCTCTGTTTTCTGGAGGCAGGC  549

seq1  TACTGTCTGAAAACACATTTTCTGTTTATACATGCATTTACCACATATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCTGAAAACACATTTTCTGTTTATACATGCATTTACCACATATTC  599

seq1  CGTGGGAATGGGACCTCTTTACGTTTTCAGTCTTTTCTGGAAAAGACTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGAATGGGACCTCTTTACGTTTTCAGTCTTTTCTGGAAAAGACTTT  649

seq1  TATTTT----TATCTATCTATCTATCTATCTATCTATCTATCTATCATCT  692
      ||||||    ||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCT  699

seq1  ATCGAATTTATTTTGCAAAGGGGTCAGGGACAGCAAGTTGGGGGTGGGGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAATTTATTTTGCAAAGGGGTCAGGGACAGCAAGTTGGGGGTGGGGA  749

seq1  TGTATTTGTTAAATAAGGTGAATTC  767
      |||||||||||||||||||||||||
seq2  TGTATTTGTTAAATAAGGTGAATTC  774