BAC Information

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BAC

Clone NameB6Ng01-049A11
Chromosome15 (Build37)
Map Location 102,295,006 - 102,455,171
singlet/doubletdoublet
Overlap genePcbp2, Map3k12, Tarbp2, Npff, Atf7
Upstream geneKrt85, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13
Downstream geneLOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049A11.bB6Ng01-049A11.g
ACCDH873406DH873407
length1,0821,020
definitionDH873406|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A11, 5' end.DH873407|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,295,006 - 102,296,099)(102,454,148 - 102,455,171)
sequence
gaattcaattcccagcacaactgcacagtggctcgaatccatctgtaatg
ggatttgctactctcttttgttaatatctgaagatagctacagagtacta
atatacattatataaatacatatatttgcatatataaaaatctatataca
taaagatgtgtgtatgtatatatgtgtatacatacacatacacatacaca
cacacacacacacacacacacaaatttggaggccagagtaagactttggg
tgtcttcctctattgctctctaccttattcccttgaaacaatctctaact
gaacctgtaactgaacctggctaggtgggctagctaacaagttttcagga
tccaagtattattggttcagggaataaagctatgtctttgagcatgttag
gcaagcacacgtgctgaggtacattctcagacctgttttttgtttgtttc
tttttttgagacaggtcttcattatataactctggctgtcctagaactca
ctatgtggatcaggctggccccaggtttacagagtttcacctgctctgct
tccccaatactgggattaaaagtgtgagctatcaccgcctgcctttattt
ttgttttgtttttgagagagggcctccttagatgtcttggaacttgctgt
attagctagtctacaggacttttggttctctaagccactttgcttagcct
attccctatattcttaatgtggaagtgactactttagtgaacagcagttg
aaacattgggagccactggctatatctgagcactgtgggggaaccactgt
ctttttaagatgccagtcatttcctaatgatttacatttcaagctgaact
ttggcatgcactgacatatctaaagatataagttctggctaagtgtaatg
gttgagccctgtataaatgagccctgggtcttctgtactctctctagctc
ctccattccattactggcctggttctgaaacatttgggtttgcacccttc
ctccgtacccagtccatactctccaagggatagtctccagatttttaaaa
agagttatatttatttatttttggcatatgag
gaattcagaagaatctgagcaagagacacggtgtcagaaagtatggatct
ggacagattaagtggatgagtttaggaggacatgtgagtgggttgggttg
ctagaaggcatcgcttcggtgataatatggaaatccagagggtaaggggg
gatatttggagaagagacagcgactgacatacagtctggttctttcttca
gtcgggagaccgccaggatactgcttagtgttttttggtggatatggcac
ccagactggtgaccagccagccaaaatgctggcccgggggttgagaagaa
gaaaagtagggcgctactctgattgtcatttttccagtgttccactttcc
aagtttcatttctttcagaacacagggatgtgggcctgggacttcgcagt
ccaagttggagacccgttgggacttctatgttgctctgaaatgcttatta
tgtgcactcactggggtgtttactacccagggcacctcctacccagattc
ccgtgttactactttcctaactttgttttctgcttagcagagggtgtttt
aatatctctcagggttcatatgaagtataggtttgtggagatgtgcaggt
ttttttttttttttttaatttcagcaaactcatttgtttcctatgtttaa
aatttttttcagcagtataatttctgaagaaactataggtactctaaaca
ctaacaataaattttgtttccttaaatgtgaattttccctttcgttcatt
aagagttatttaatggatgattgaacttaatcttaattatcttgtatatt
ttctttttttattaattggggcagtgtttcatatagcccaagtacacctc
agactgagataactgagggtgaccatgatcctccacccacctccaagtgc
ttggatataggtgtgtaccaccatatccagtttatgtagtactagggtct
caggtctttataactggtaggaaagaactctcccaggagaccacagtctt
tacccttggtgtggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102295006_102296099
seq2: B6Ng01-049A11.b_44_1125

seq1  GAATTCAATTCCCAGCACAACTGCACAGTGGCTCGAATCCATCTGTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCACAACTGCACAGTGGCTCGAATCCATCTGTAATG  50

seq1  GGATTTGCTACTCTCTTTTGTTAATATCTGAAGATAGCTACAGAGTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGCTACTCTCTTTTGTTAATATCTGAAGATAGCTACAGAGTACTA  100

seq1  ATATACATTATATAAATACATATATTTGCATATATAAAAATCTATATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATTATATAAATACATATATTTGCATATATAAAAATCTATATACA  150

seq1  TAAAGATGTGTGTATGTATATATGTGTATACATACACATACACATACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGTGTGTATGTATATATGTGTATACATACACATACACATACACA  200

seq1  CACACACACACACACACACACAAATTTGGAGGCCAGAGTAAGACTTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACAAATTTGGAGGCCAGAGTAAGACTTTGGG  250

seq1  TGTCTTCCTCTATTGCTCTCTACCTTATTCCCTTGAAACAATCTCTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCTCTATTGCTCTCTACCTTATTCCCTTGAAACAATCTCTAACT  300

seq1  GAACCTGTAACTGAACCTGGCTAGGTGGGCTAGCTAACAAGTTTTCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTAACTGAACCTGGCTAGGTGGGCTAGCTAACAAGTTTTCAGGA  350

seq1  TCCAAGTATTATTGGTTCAGGGAATAAAGCTATGTCTTTGAGCATGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTATTATTGGTTCAGGGAATAAAGCTATGTCTTTGAGCATGTTAG  400

seq1  GCAAGCACACGTGCTGAGGTACATTCTCAGACCTGTTTTTTGTTTGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACACGTGCTGAGGTACATTCTCAGACCTGTTTTTTGTTTGTTTC  450

seq1  TTTTTTTGAGACAGGTCTTCATTATATAACTCTGGCTGTCCTAGAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAGACAGGTCTTCATTATATAACTCTGGCTGTCCTAGAACTCA  500

seq1  CTATGTGGATCAGGCTGGCCCCAGGTTTACAGAGTTTCACCTGCTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGGATCAGGCTGGCCCCAGGTTTACAGAGTTTCACCTGCTCTGCT  550

seq1  TCCCCAATACTGGGATTAAAAGTGTGAGCTATCACCGCCTGCCTTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAATACTGGGATTAAAAGTGTGAGCTATCACCGCCTGCCTTTATTT  600

seq1  TTGTTTTGTTTTTGAGAGAGGGCCTCCTTAGATGTCTTGGAACTTGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTGAGAGAGGGCCTCCTTAGATGTCTTGGAACTTGCTGT  650

seq1  ATTAGCTAGTCTACAGGACTTTTGGTTCTCTAAGCCACTTTGCTTAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTAGTCTACAGGACTTTTGGTTCTCTAAGCCACTTTGCTTAGCCT  700

seq1  ATTCCCTATATTCTTAATGTGGAAGTGACTACTTTAGTGAACAGCAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTATATTCTTAATGTGGAAGTGACTACTTTAGTGAACAGCAGTTG  750

seq1  AAACATTGGGAGCCACTGGCTATATCTGAGCACTGTGGGGGAACCACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGGGAGCCACTGGCTATATCTGAGCACTGTGGGGGAACCACTGT  800

seq1  CTTTTTAAGATGCCAGTCATTTCCTAATGATTTACATTTCAAGCTGAAAC  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTTTTAAGATGCCAGTCATTTCCTAATGATTTACATTTCAAGCTG-AAC  849

seq1  TTTGGCATGCACTGACATATCTAAAGATATAAGTTCTGGCTAAGTGTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATGCACTGACATATCTAAAGATATAAGTTCTGGCTAAGTGTAAT  899

seq1  GGTTGAGCCCTGTATAAATGAGCCCTGGGTCTTCTGTACTCTCTCTTAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTTGAGCCCTGTATAAATGAGCCCTGGGTCTTCTGTACTCTCTC-TAGC  948

seq1  TCCTCCCAATTCCATTACTGGCCTGGTTCCTGAAACCATTGGGTTTGCCA  1000
      ||||||  |||||||||||||||||||| |||||||  ||||||||| ||
seq2  TCCTCC--ATTCCATTACTGGCCTGGTT-CTGAAACATTTGGGTTTG-CA  994

seq1  CCCCTCCTCTGTACACCAGTCCATACTCCCAAAGGTGATAGTTCTCAGAT  1050
      ||| ||||| |||| ||||||||||||| | |||| ||||||   |||||
seq2  CCCTTCCTCCGTAC-CCAGTCCATACTCTCCAAGG-GATAGTCTCCAGAT  1042

seq1  TTTTTAAAAAAAGA-TTATAATTTTATTTATTTTATGCATATGAG  1094
      ||||   ||||||| |||||  ||||||||||||  |||||||||
seq2  TTTT---AAAAAGAGTTATA--TTTATTTATTTTTGGCATATGAG  1082

seq1: chr15_102454148_102455171
seq2: B6Ng01-049A11.g_69_1088 (reverse)

seq1  CACACACACACACACAAGGGCTAAAGACTGTAGCTCACATGGCAGAGTTC  50
      ||||||| ||||| |||||| |||||||||| | || | ||| |||||||
seq2  CACACAC-CACAC-CAAGGG-TAAAGACTGT-GGTCTCCTGGGAGAGTTC  46

seq1  TTACCTACCATGTATAAGACCCTGAGAACCCTAGTACTACATAAACTGGA  100
      || |||||||  |||||   |||||| |||||||||||||||||||||||
seq2  TTTCCTACCAGTTATAAAGACCTGAG-ACCCTAGTACTACATAAACTGGA  95

seq1  TATGGTGGTACACACCTATTATCCCAGCACTTGGGAGGTGGGTGGAGGAT  150
      |||||||||||||||||| ||||| ||||||| |||||||||||||||||
seq2  TATGGTGGTACACACCTA-TATCCAAGCACTT-GGAGGTGGGTGGAGGAT  143

seq1  CATGGTCACCCTCAGTTATCTCAGTCTGAGGTGTACTTGGGCTATATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCACCCTCAGTTATCTCAGTCTGAGGTGTACTTGGGCTATATGAA  193

seq1  ACACTGCCCCAATTAAT-AAACAAGAAAATATACAAGATAATTAAGATTA  249
      ||||||||||||||||| ||| ||||||||||||||||||||||||||||
seq2  ACACTGCCCCAATTAATAAAAAAAGAAAATATACAAGATAATTAAGATTA  243

seq1  AGTTCAATCATCCATTAAATAACTCTTAATGAACGAAAGGGAAAATTCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATCATCCATTAAATAACTCTTAATGAACGAAAGGGAAAATTCAC  293

seq1  ATTTAAGGAAACAAAATTTATTTGTTAGTGTTTAGAGTACCTATAGTTTC  349
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTTAAGGAAACAAAATTTA-TTGTTAGTGTTTAGAGTACCTATAGTTTC  342

seq1  TTCAGAAATTATACTGCTG-AAAAAATTTTAAACATAGGAAACAAATGAG  398
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCAGAAATTATACTGCTGAAAAAAATTTTAAACATAGGAAACAAATGAG  392

seq1  TTTGCTGAAATT--AAAAAAAAAAAAAAACCTGCACATCTCCACAAACCT  446
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAAATTAAAAAAAAAAAAAAAAACCTGCACATCTCCACAAACCT  442

seq1  ATACTTCATATGAACCCTGAGAGATATTAAAACACCCTCTGCTAAGCAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCATATGAACCCTGAGAGATATTAAAACACCCTCTGCTAAGCAGA  492

seq1  AAACAAAGTTAGGAAAGTAGTAACACGGGAATCTGGGTAGGAGGTGCCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTTAGGAAAGTAGTAACACGGGAATCTGGGTAGGAGGTGCCCT  542

seq1  GGGTAGTAAACACCCCAGTGAGTGCACATAATAAGCATTTCAGAGCAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTAAACACCCCAGTGAGTGCACATAATAAGCATTTCAGAGCAACA  592

seq1  TAGAAGTCCCAACGGGTCTCCAACTTGGACTGCGAAGTCCCAGGCCCACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTCCCAACGGGTCTCCAACTTGGACTGCGAAGTCCCAGGCCCACA  642

seq1  TCCCTGTGTTCTGAAAGAAATGAAACTTGGAAAGTGGAACACTGGAAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGTTCTGAAAGAAATGAAACTTGGAAAGTGGAACACTGGAAAAA  692

seq1  TGACAATCAGAGTAGCGCCCTACTTTTCTTCTTCTCAACCCCCGGGCCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATCAGAGTAGCGCCCTACTTTTCTTCTTCTCAACCCCCGGGCCAG  742

seq1  CATTTTGGCTGGCTGGTCACCAGTCTGGGTGCCATATCCACCAAAAAACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGCTGGCTGGTCACCAGTCTGGGTGCCATATCCACCAAAAAACA  792

seq1  CTAAGCAGTATCCTGGCGGTCTCCCGACTGAAGAAAGAACCAGACTGTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAGTATCCTGGCGGTCTCCCGACTGAAGAAAGAACCAGACTGTAT  842

seq1  GTCAGTCGCTGTCTCTTCTCCAAATATCCCCCCTTACCCTCTGGATTTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCGCTGTCTCTTCTCCAAATATCCCCCCTTACCCTCTGGATTTCC  892

seq1  ATATTATCACCGAAGCGATGCCTTCTAGCAACCCAACCCACTCACATGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCACCGAAGCGATGCCTTCTAGCAACCCAACCCACTCACATGTC  942

seq1  CTCCTAAACTCATCCACTTAATCTGTCCAGATCCATACTTTCTGACACCG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAACTCATCCACTTAATCTGTCCAGATCCATACTTTCTGACACCG  992

seq1  TGTCTCTTGCTCAGATTCTTCTGAATTC  1024
      ||||||||||||||||||||||||||||
seq2  TGTCTCTTGCTCAGATTCTTCTGAATTC  1020