BAC Information

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BAC

Clone NameB6Ng01-049E24
Chromosome15 (Build37)
Map Location 95,312,360 - 95,430,145
singlet/doubletdoublet
Overlap geneNell2
Upstream genePus7l, Irak4, Twf1, Tmem117, LOC100043315
Downstream geneDbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049E24.bB6Ng01-049E24.g
ACCDH873614DH873615
length840779
definitionDH873614|Mus musculus domesticus DNA, BAC clone: B6Ng01-049E24, 5' end.DH873615|Mus musculus domesticus DNA, BAC clone: B6Ng01-049E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,312,360 - 95,312,910)(95,429,368 - 95,430,145)
sequence
gaattccacgtaagggtctagcggtggtttgaataggaatggtccccata
cactcatgggtaggaatgtttggacctttggaagtggcactattaggagg
tgtggtcttatgggagtgggtgtggccttgtcagaggaagtgtgtcactg
tgagcaggttttcaggtctcatgctcaagctatgcccagtgtggctcaca
gtttcttcttcctgcctgcagatcgaggaactctcagctccttctccagc
accatgtctgcctgtgtgtcactaagcttccctctatgatgataatggac
tgaacctctgaacctgtaagccagccccaattaaatggtttcctttatga
gagttatggtggtcaggatgtctcttcacagtaataagactcaaacttag
ctcctagctccaacatggccacctcgggaggtgttttcccagagtcagcc
ttgaagaaacacagaatctcgtgcagctgtgattttggtgggaggcggac
tagaaaacccgctcctgtcaaactctgacatcgttagtcacactgtcctg
gttttgtgggtatgagtttacaagattgaaaggatcatggaatcttgtac
tgaggttgaaaagaaacgagggcagcaatgtgctgggattctttaaagag
gtcggagaggccactgcgtgcagctgtgaaagtgaatctttttgttgtaa
ttgtagacccaagtagctggagattcagtggcccaagaaacaccctgcca
accgaagcgcaaccttggggtcagaagaaaaaggggatctgagagggagc
catggtgtggggaggaaaagacagagcccggctcactgat
gaattccaggtgtgaatcagtgtgctgggcttaagggtctttacctcatc
aaacctgttcctttactcaggtcacacagtattattgtgatggttgacat
aaacaatgtataggaagggacatattaaataatacataattgcagcttgt
aagccattaagtgagatggattgcagatgacaaatgcttatacagactgc
ccatctctgacttgaaaacttgctcttctccacctccccttccagccctg
ctgaactctacacatttatgtggcttcttccacactgtctccctctgtct
ccacttctagtccgccccccccccccatgctttcttttcgcaaaacctga
cgcatcgcaagagcttggcagatgttgaattggtaagtgaatttattaat
tccaagctctacttatttcctttttattacccaaataaaataatctttca
tatttttcctccaagaaatcacggagagatactgattaaattctaggtcg
cgccctgcagggaaaaccaaggtcagcacacatacctcttctcttcagac
gatttcttgctatctggggacagggcatattccctgcagctaagtgctgt
gttggaaagagagagccaaataagttccaagaaaggtaagagtaaaatgt
ggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgttgcagatgcattgaaaa
atgactacattggttagacacaatagagcagagttcagattcagttcatg
cattgggtagagtcctgggggtaaataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_95312360_95312910
seq2: B6Ng01-049E24.b_332_885

seq1  TGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAAT  50

seq1  GGTTTCCTTTATGAGAGTTATGGTGGTCAGGATGTCTCTTCACAGTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTTTATGAGAGTTATGGTGGTCAGGATGTCTCTTCACAGTAATA  100

seq1  AGACTCAAACTTAGCTCCTAGCTCCAACATGGCCACCTCGGGAGGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAACTTAGCTCCTAGCTCCAACATGGCCACCTCGGGAGGTGTTT  150

seq1  TCCCAGAGTCAGCCTTGAAGAAACACAGAATCTCGTGCAGCTGTGA-TTT  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCCAGAGTCAGCCTTGAAGAAACACAGAATCTCGTGCAGCTGTGATTTT  200

seq1  GGTGGGAGGCGGACTAGAAAACCCGCTCCTGTCAAACTCTGACATCGTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGGCGGACTAGAAAACCCGCTCCTGTCAAACTCTGACATCGTTA  250

seq1  GTCACACTGTCCTGGTTTTGTGGGTATGAGTTTACAAGATTGAAAGGATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACTGTCCTGGTTTTGTGGGTATGAGTTTACAAGATTGAAAGGATC  300

seq1  ATGGAATCTTGTACTGAGGTTGAAAAGAAACGAGGGCAGCAATGTGCT-G  348
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGGAATCTTGTACTGAGGTTGAAAAGAAACGAGGGCAGCAATGTGCTGG  350

seq1  GATTCTTTAAAGAGGTCGGAGAGGCCACTGCGTGCAGCTGTGAAAGTGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTAAAGAGGTCGGAGAGGCCACTGCGTGCAGCTGTGAAAGTGAA  400

seq1  GC-TTTTGTTGTAA-TGGAGACCCAAGCAAGCTGGAGATTCAG-GGGCCA  445
       | ||||||||||| || |||||||||  |||||||||||||| || |||
seq2  TCTTTTTGTTGTAATTGTAGACCCAAG-TAGCTGGAGATTCAGTGGCCCA  449

seq1  AGAAACA-CCTGCCAACAGAAGCGCAACCATGGGGTCAGAAGGAAAAAGG  494
      ||||||| ||||||||| ||||||||||| ||||||||||| ||||||||
seq2  AGAAACACCCTGCCAACCGAAGCGCAACCTTGGGGTCAGAA-GAAAAAGG  498

seq1  GGATCTGAGAGGGAGCCATGGTGTGGGGAGGAGAAGACAGAGGCCTGGCT  544
      |||||||||||||||||||||||||||||||| |||||||| ||| ||||
seq2  GGATCTGAGAGGGAGCCATGGTGTGGGGAGGAAAAGACAGA-GCCCGGCT  547

seq1  CACTGAT  551
      |||||||
seq2  CACTGAT  554

seq1: chr15_95429368_95430145
seq2: B6Ng01-049E24.g_67_845 (reverse)

seq1  TCTATTTA-CCCCAGGACTCTTCCCATTGCATGAACTGAACTCTGAACTC  49
      |||||||| |||||||||||| |||| ||||||||||||| |||||||||
seq2  TCTATTTACCCCCAGGACTCTACCCAATGCATGAACTGAA-TCTGAACTC  49

seq1  TGCTCTATTGTGTCTAACCAATGTAGTCATTCTTCAATGCATCTGCAACG  99
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGCTCTATTGTGTCTAACCAATGTAGTCATTTTTCAATGCATCTGCAACG  99

seq1  CACACACACACACACACACACACACACACCACATTTTACTCTTACCTTTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACCACATTTTACTCTTACCTTTC  149

seq1  TTGGAACTTATTTGGCTCTCTC-TTCCAACACAGCACTTAGCTGCAGGGA  198
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGGAACTTATTTGGCTCTCTCTTTCCAACACAGCACTTAGCTGCAGGGA  199

seq1  ATATGCCCTGTCCCCAGATAGCAAGAAATCGTCTGAAGAGAAGAGGTATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCCTGTCCCCAGATAGCAAGAAATCGTCTGAAGAGAAGAGGTATG  249

seq1  TGTGCTGACCTTGGTTTTCCCTGCAGGGCGCGACCTAGAATTTAATCAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGACCTTGGTTTTCCCTGCAGGGCGCGACCTAGAATTTAATCAGT  299

seq1  ATCTCTCCGTGATTTCTTGGAGGAAAAATATGAAAGATTATTTTATTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCGTGATTTCTTGGAGGAAAAATATGAAAGATTATTTTATTTGG  349

seq1  GTAATAAAAAGGAAATAAGTAGAGCTTGGAATTAATAAATTCACTTACCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAAAAGGAAATAAGTAGAGCTTGGAATTAATAAATTCACTTACCA  399

seq1  ATTCAACATCTGCCAAGCTCTTGCGATGCGTCAGGTTTTGCGAAAAGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACATCTGCCAAGCTCTTGCGATGCGTCAGGTTTTGCGAAAAGAAA  449

seq1  GCATGGGGGGGGGGGGCGGACTAGAAGTGGAGACAGAGGGAGACAGTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGGGGGGGGGCGGACTAGAAGTGGAGACAGAGGGAGACAGTGTG  499

seq1  GAAGAAGCCACATAAATGTGTAGAGTTCAGCAGGGCTGGAAGGGGAGGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCCACATAAATGTGTAGAGTTCAGCAGGGCTGGAAGGGGAGGTG  549

seq1  GAGAAGAGCAAGTTTTCAAGTCAGAGATGGGCAGTCTGTATAAGCATTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGCAAGTTTTCAAGTCAGAGATGGGCAGTCTGTATAAGCATTTG  599

seq1  TCATCTGCAATCCATCTCACTTAATGGCTTACAAGCTGCAATTATGTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCAATCCATCTCACTTAATGGCTTACAAGCTGCAATTATGTATT  649

seq1  ATTTAATATGTCCCTTCCTATACATTGTTTATGTCAACCATCACAATAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATGTCCCTTCCTATACATTGTTTATGTCAACCATCACAATAAT  699

seq1  ACTGTGTGACCTGAGTAAAGGAACAGGTTTGATGAGGTAAAGACCCTTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGACCTGAGTAAAGGAACAGGTTTGATGAGGTAAAGACCCTTAA  749

seq1  GCCCAGCACACTGATTCACACCTGGAATTC  778
      ||||||||||||||||||||||||||||||
seq2  GCCCAGCACACTGATTCACACCTGGAATTC  779