BAC Information

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BAC

Clone NameB6Ng01-050J23
Chromosome15 (Build37)
Map Location 42,220,828 - 42,371,414
singlet/doubletdoublet
Overlap geneLOC100039197, Angpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050J23.bB6Ng01-050J23.g
ACCDH874511DH874512
length9611,177
definitionDH874511|Mus musculus domesticus DNA, BAC clone: B6Ng01-050J23, 5' end.DH874512|Mus musculus domesticus DNA, BAC clone: B6Ng01-050J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,370,451 - 42,371,414)(42,220,828 - 42,222,341)
sequence
gaattcacttaacatttttttaaaaaaaattgccagaaacacaaatattt
aaaccccaaaacttcaaaacataatataattcaaaagtatattagcatgc
tgatttgtgaaggtaggaaaacattaaaagtctgttttctgtgattaaat
aattaactttagtgtacaatataaaacagtgcagttcccattgtgcagta
ggtgaagtgtgtcagttgatgtccactggcatttgtggtggtgttagagc
atgcatgatgtaaaatatgcatgtggtgtattcagaaggaaggctgccat
gaagccaatgtttcccaagggagtacttccagaaacacctctgaatcact
gcattcaaatttgaattaatacttgattattgcatactcacaaacctttc
attattgacaaatgtttccagaccctcacattcagtggccacaagtgtca
ccacgcactgtttaagatggcggccttctaagagactttaggatatgtgt
gtgtactttctggggagctgaaccagccttctcagttccagtgtctaggt
ttttagaagtttgaatatcttaatatttctttaataaaggttccttttct
actaagaatctggttttaagatgaaatttcaatgctcacagaatgaaggc
attcaggcacatacactactagccataaccatgtgtagacaaggctcagt
attttctgccaccaactgtctagtggcagcagcagacacattaatagaat
gtcacaagagaggcgtctccatgtgcaccctcaattagaatatttgatat
atcacgcaagcattcacaagatgcccttgaggtttaagaagttctggaca
tcaacctgtctccatggaggccttgtttctcaaaggacaacagtgatttg
agcctgtcagtgtcattcaaactgctggcggagaacaacaaagccagcac
cagctttgtaa
gaattctctgtttagatttgtaccccatttttaaactggattgtttactt
cgctagtgtctagttttgctggtgtgtagtcctttatatatttggaaatt
aattctttgtcagatgtgtggttggtaagaatctttcccatttcctaggc
tggaatttgattctattgtcttacagaagcttatcagattcatcatatct
catttattaattgttggtcttagtgtctgcacttttcatgttctgttcaa
gaagttgtctcctgtgccaatgcattcaaggctacaccccactttctctt
ccatcagccccagtgtatctggttttattaatacatccatatctattacc
cgtcacaaaactcaagttcaagtggatcaaaattcacaacataaaagtcc
attttgcttaaaatattatctttaagctaagaaatgtcacagagggcttt
tgattgccagctaaagctagtgcttaccctgaaagacaaaacacagggtg
caaagcaaattctgaaaggaaagtttaggtttagttcttgctgctcaata
gaggattatgccttaaatcttttctttattttattttattttttttattg
ggtatttatttcatttacatttccaatgctatcccaaaagtcccctaaac
gctctcccacccactcccctacccacccactcccacttcttggccctggc
gttcccttgtactgagtaaatcttttatttgtatgtcctttattagtcag
ctaattaattagaagagggctaatattattttaaaggacatgcagcttgg
taattatcctatcatgtccatgaaaccatttactttaggatgttcaagaa
aagtcattgcctaagcctcttccaccatgatatttatatgccactgagaa
agtacgtcttcaatcttcatgatatgtatagaatactgagtggtaaattt
taaaagaaataaaattagttttcttccagtattggttttcaaaatatatt
tcatcttctcctttgatgatcaatattccatcctttagaagaataaagga
agccaggcgtggtgtgccacgccctttatcccagcactttggaagcgaag
cagcaatttctgagtttcaggcagcctggtctaaaagtgagtccagacag
caagacatcacagagaaactggtctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_42370451_42371414
seq2: B6Ng01-050J23.b_46_1006 (reverse)

seq1  TTACAAAGCTGGTGCTGGCCTTTGTTGTTCTCCGCCAGCAGTTTGAATGA  50
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTACAAAGCTGGTGCTGG-CTTTGTTGTTCTCCGCCAGCAGTTTGAATGA  49

seq1  CACTGACAGGCTCAAATCACTGTTGTCCTTTGAGGAAACAAGGCCTCCAT  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACTGACAGGCTCAAATCACTGTTGTCCTTTGA-GAAACAAGGCCTCCAT  98

seq1  GGAGACAGGTTGATGTCCAGAACTTCTTAAACCTCAAGGGCATCCTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGAGACAGGTTGATGTCCAGAACTTCTTAAACCTCAAGGGCAT-CTTGTG  147

seq1  AATGCTTGCCTGATATATCAAATATTCTAATTGAGGGTGCACATGGAGAC  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGCGTGATATATCAAATATTCTAATTGAGGGTGCACATGGAGAC  197

seq1  GCCTCTCTTGTGACATTCTATTAATGTGTCTGCTGCTGCCACTAGACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTTGTGACATTCTATTAATGTGTCTGCTGCTGCCACTAGACAGT  247

seq1  TGGTGGCAGAAAATACTGAGCCTTGTCTACACATGGTTATGGCTAGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCAGAAAATACTGAGCCTTGTCTACACATGGTTATGGCTAGTAGT  297

seq1  GTATGTGCCTGAATGCCTTCATTCTGTGAGCATTGAAATTTCATCTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCCTGAATGCCTTCATTCTGTGAGCATTGAAATTTCATCTTAAA  347

seq1  ACCAGATTCTTAGTAGAAAAGGAACCTTTATTAAAGAAATATTAAGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATTCTTAGTAGAAAAGGAACCTTTATTAAAGAAATATTAAGATAT  397

seq1  TCAAACTTCTAAAAACCTAGACACTGGAACTGAGAAGGCTGGTTCAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTCTAAAAACCTAGACACTGGAACTGAGAAGGCTGGTTCAGCTC  447

seq1  CCCAGAAAGTACACACACATATCCTAAAGTCTCTTAGAAGGCCGCCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAGTACACACACATATCCTAAAGTCTCTTAGAAGGCCGCCATCT  497

seq1  TAAACAGTGCGTGGTGACACTTGTGGCCACTGAATGTGAGGGTCTGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTGCGTGGTGACACTTGTGGCCACTGAATGTGAGGGTCTGGAAA  547

seq1  CATTTGTCAATAATGAAAGGTTTGTGAGTATGCAATAATCAAGTATTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCAATAATGAAAGGTTTGTGAGTATGCAATAATCAAGTATTAAT  597

seq1  TCAAATTTGAATGCAGTGATTCAGAGGTGTTTCTGGAAGTACTCCCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTGAATGCAGTGATTCAGAGGTGTTTCTGGAAGTACTCCCTTGG  647

seq1  GAAACATTGGCTTCATGGCAGCCTTCCTTCTGAATACACCACATGCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTGGCTTCATGGCAGCCTTCCTTCTGAATACACCACATGCATAT  697

seq1  TTTACATCATGCATGCTCTAACACCACCACAAATGCCAGTGGACATCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCATGCATGCTCTAACACCACCACAAATGCCAGTGGACATCAAC  747

seq1  TGACACACTTCACCTACTGCACAATGGGAACTGCACTGTTTTATATTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACTTCACCTACTGCACAATGGGAACTGCACTGTTTTATATTGTA  797

seq1  CACTAAAGTTAATTATTTAATCACAGAAAACAGACTTTTAATGTTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAGTTAATTATTTAATCACAGAAAACAGACTTTTAATGTTTTCCT  847

seq1  ACCTTCACAAATCAGCATGCTAATATACTTTTGAATTATATTATGTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACAAATCAGCATGCTAATATACTTTTGAATTATATTATGTTTTG  897

seq1  AAGTTTTGGGGTTTAAATATTTGTGTTTCTGGCAATTTTTTTTAAAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGGGGTTTAAATATTTGTGTTTCTGGCAATTTTTTTTAAAAAAA  947

seq1  TGTTAAGTGAATTC  964
      ||||||||||||||
seq2  TGTTAAGTGAATTC  961

seq1: chr15_42220828_42222341
seq2: B6Ng01-050J23.g_68_1244

seq1  GAATTCTCTGTTTAGATTTGTACCCCATTTTTAAACTGGATTGTTTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAGATTTGTACCCCATTTTTAAACTGGATTGTTTACTT  50

seq1  CGCTAGTGTCTAGTTTTGCTGGTGTGTAGTCCTTTATATATTTGGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAGTGTCTAGTTTTGCTGGTGTGTAGTCCTTTATATATTTGGAAATT  100

seq1  AATTCTTTGTCAGATGTGTGGTTGGTAAGAATCTTTCCCATTTCCTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTGTCAGATGTGTGGTTGGTAAGAATCTTTCCCATTTCCTAGGC  150

seq1  TGGAATTTGATTCTATTGTCTTACAGAAGCTTATCAGATTCATCATATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTGATTCTATTGTCTTACAGAAGCTTATCAGATTCATCATATCT  200

seq1  CATTTATTAATTGTTGGTCTTAGTGTCTGCACTTTTCATGTTCTGTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTAATTGTTGGTCTTAGTGTCTGCACTTTTCATGTTCTGTTCAA  250

seq1  GAAGTTGTCTCCTGTGCCAATGCATTCAAGGCTACACCCCACTTTCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTCTCCTGTGCCAATGCATTCAAGGCTACACCCCACTTTCTCTT  300

seq1  CCATCAGCCCCAGTGTATCTGGTTTTATTAATACATCCATATCTATTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCCCCAGTGTATCTGGTTTTATTAATACATCCATATCTATTACC  350

seq1  CGTCACAAAACTCAAGTTCAAGTGGATCAAAATTCACAACATAAAAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACAAAACTCAAGTTCAAGTGGATCAAAATTCACAACATAAAAGTCC  400

seq1  ATTTTGCTTAAAATATTATCTTTAAGCTAAGAAATGTCACAGAGGGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTAAAATATTATCTTTAAGCTAAGAAATGTCACAGAGGGCTTT  450

seq1  TGATTGCCAGCTAAAGCTAGTGCTTACCCTGAAAGACAAAACACAGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCCAGCTAAAGCTAGTGCTTACCCTGAAAGACAAAACACAGGGTG  500

seq1  CAAAGCAAATTCTGAAAGGAAAGTTTAGGTTTAGTTCTTGCTGCTCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAATTCTGAAAGGAAAGTTTAGGTTTAGTTCTTGCTGCTCAATA  550

seq1  GAGGATTATGCCTTAAATCTTTTCTTTATTTTATTTTATTTTTTTTATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTATGCCTTAAATCTTTTCTTTATTTTATTTTATTTTTTTTATTG  600

seq1  GGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCTAAAC  650

seq1  GCTCTCCCACCCACTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCACCCACTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGC  700

seq1  GTTCCCTTGTACTGAGTAAATCTTTTATTTGTATGTCCTTTATTAGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTGTACTGAGTAAATCTTTTATTTGTATGTCCTTTATTAGTCAG  750

seq1  CTAATTAATTAGAAGAGGGCTAATATTATTTTAAAGGACATGCAGCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAATTAGAAGAGGGCTAATATTATTTTAAAGGACATGCAGCTTGG  800

seq1  TAATTATCCTATCATGTCCATGAAACCATTTACTTTAGGATGTTCAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATCCTATCATGTCCATGAAACCATTTACTTTAGGATGTTCAAGAA  850

seq1  AAGTCATTGCCTAAGCCTCTTCCACCATGATATTTATATGCCACTGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTGCCTAAGCCTCTTCCACCATGATATTTATATGCCACTGAGAA  900

seq1  AGTACGTCTTTCAATCTTCATGATATGTATAGAATAACTGAGTGGGTAAA  950
      |||||||| |||||||||||||||||||||||||| ||||||| ||||||
seq2  AGTACGTC-TTCAATCTTCATGATATGTATAGAAT-ACTGAGT-GGTAAA  947

seq1  TTTTAAAAGAAATAAAATTAGTTTTCTTCCAAGTATTGGTTATTCAAAAA  1000
      |||||||||||||||||||||||||||||| |||||||||| ||| ||||
seq2  TTTTAAAAGAAATAAAATTAGTTTTCTTCC-AGTATTGGTT-TTC-AAAA  994

seq1  TATATTTCATC-TCT-CTTTGATGATCAATATTTCCATCCTTTAGAAG-A  1047
      ||||||||||| ||| ||||||||||||||| |||||||||||||||| |
seq2  TATATTTCATCTTCTCCTTTGATGATCAATA-TTCCATCCTTTAGAAGAA  1043

seq1  TAAAGGAAGCCAGGCGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGA  1097
      |||||||||||||||||||||   |||||| || |||||||||||| |||
seq2  TAAAGGAAGCCAGGCGTGGTGTGCCACGCCCTTTATCCCAGCACTTTGGA  1093

seq1  GGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGT  1147
       || || ||| ||| |||||||||||  ||| |||||||||||| |||||
seq2  AGC-GAAGCA-GCA-ATTTCTGAGTTTCAGG-CAGCCTGGTCTA-AAAGT  1138

seq1  GAGTTCTAGGACAGCCAAGACTACACAGAGAAAC---CCTGTCTTGAAAA  1194
      |||| |   ||||| ||||||  |||||||||||    ||||        
seq2  GAGTCC--AGACAG-CAAGACATCACAGAGAAACTGGTCTGT--------  1177

seq1  AAACAAAAAACAAAACAACAACAACAACAACAAAAAAGAAGATAAAGGAA  1244
                                                        
seq2  --------------------------------------------------  1177

seq1  GCATCATATATACCTTTTCAAAATTGGAAAACCATGTGACTTTCCCAGAC  1294
                                                        
seq2  --------------------------------------------------  1177

seq1  CTGGAAAGCTACATGTGACTCTTTGATCAACGAGGAAAATAAACGCCAAG  1344
                                                        
seq2  --------------------------------------------------  1177

seq1  CATGGAATCATTACTTGGACTTAATTTAATTTGAGAGTGAACTAATTCTG  1394
                                                        
seq2  --------------------------------------------------  1177

seq1  CAAGTGGAAATAATTTTCTAGCACTCAGGATTCAAGGAGATAAAATTGCC  1444
                                                        
seq2  --------------------------------------------------  1177

seq1  TTTCATTTATCAAAAAATGTCCCCAAAGACAGCTTGGTTTCCATAACTAG  1494
                                                        
seq2  --------------------------------------------------  1177

seq1  CATAATAATTATTGGTCTGT  1514
                          
seq2  --------------------  1177