BAC Information

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BAC

Clone NameB6Ng01-051E16
Chromosome15 (Build37)
Map Location 9,887,683 - 9,984,993
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
Downstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051E16.bB6Ng01-051E16.g
ACCDH874978DH874979
length1,1901,107
definitionDH874978|Mus musculus domesticus DNA, BAC clone: B6Ng01-051E16, 5' end.DH874979|Mus musculus domesticus DNA, BAC clone: B6Ng01-051E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,887,683 - 9,888,879)(9,983,889 - 9,984,993)
sequence
gaattcatcatcattgtacagaacacaggtcaaaactggagactcacaaa
tatatcttaattgacttcatagtatgaagtttcaggctagtgattataat
taaagatattttaaaaataaattcatcagtctttctatgatgcagggaac
atcagagaacagaagggagaaaaaaatgtaagagctaaaggacaagaagc
aaaagcattctgtggtatctgacgttgggatatggcacacttgatgtact
cctctcaagtacacagcagctatggctaccgacacaagtttgtataaaga
aaaataagctgtagtggtaggagcaagaccagctgggaagatttgcccat
gtgagaaatggctaagagtctaatgagtgaataggagatgaatacattgt
atgcatatatgaaattatatcaaaaattaaatttaaataataacgacaac
cataatctctaggaaataaacagatcccattattgtactatcactactgg
attagaataatttgactatttttattttccgtgatgactttccatcacta
caacatctgagataattgatttataaagaaaaattattgaagaattttgg
aggtttgggtctgtggttgattattctaattgttttgtaacttgtagtaa
ggtcccatggtaggatccaggggaggaaacacatcacattgtgccctggg
ataaaaaagaaagaagaaatggccagagttgggcaattccattcaagggc
ttgttcctactgatagccttgattggcccatctctagatgttccgacaac
ttccaagctgccttgtcatagaccaatccaaatgcatcacataattcttt
ggagggacttaaaatcaaactacaataccaataaattctgatgaatttat
ctcattacctcatattctgtttgggtgagtagcagattgttaatatttat
aaaactacactaaaatagggatcttatactgacacactaaaatatagaaa
agtcgctgggaaggctactgggccttgtcctaaggaaacaggaaggagta
tgaagtgtaatgttcatagcacatttccttgttttcagtcatggaatcac
actagaacaaagcactcgcagctgtcagccttcctcgacttctagcctga
gagaattggaaacaatgctcagcattataaatccctatta
gaattccaggatttgttcttagtggaaaatggtagcatgataatttggac
ccctaggactgatttaagatgtgcataaaacattttctgtatttttcagt
aaaggaagtgtggagtccaaattttcttttcttagacctaagctaaagat
catggcttcctgatgactatcatgcagtggaggttgaacttaggaattcc
tggagatgagtaacctaaatgcttgcagtagctgcatgcgccctgcgaag
ctagttctcaggacacaccctcttgcaagtttgccctgccagtctgtgga
catctgagtagttcaatggcaagctagcagggaaaatgattgcggccccc
aggtgacaggtgtggctgagcgcctagccaacagccagcagtgacttacc
aggaaaggcattgagtcatcctgctaatctagcccaatcaagcttcagat
gactgtagccatcgctaatatcaatctgcaatcacaagagaaatttgtgt
tgacataagggagttccataactcagtgtctggaaaacactggagccttt
tcactaggcattcttgtgtttaaatatctgagattagggtgtcaggggga
aacacgctctcctttagagtcattgggaagattttgttttcctttccttt
ttcaacttttagatgccatggcattccttggcttttaataacataactcc
tatatctacttatttccatcttcatgtggtccttccccctctgtcttcct
ggatctactttttcttatagagagagctgtcactagatttaggatctagt
tctaattccaacatgattttcatccttaagtacttaaccaaattataacc
acaaagacatcattttcaatagaattacatatcaaagtttggtggacatt
attaatacatatggactccaagtaaaacttacaactaattcttgttttca
gaaatttatcacaaatcactgtgacaataccagggggaaatggacacaga
gattccatccctactgggctggcttcaggacttgtatgccaaggggaagg
ctaacatcctggaaaggatattggcagggaataccttggcttaggaaaat
gaacggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_9887683_9888879
seq2: B6Ng01-051E16.b_42_1231

seq1  GAATTCATCATCATTGTACAGAACACAGGTCAAAACTGGAGACTCACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATCATTGTACAGAACACAGGTCAAAACTGGAGACTCACAAA  50

seq1  TATATCTTAATTGACTTCATAGTATGAAGTTTCAGGCTAGTGATTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTAATTGACTTCATAGTATGAAGTTTCAGGCTAGTGATTATAAT  100

seq1  TAAAGATATTTTAAAAATAAATTCATCAGTCTTTCTATGATGCAGGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATATTTTAAAAATAAATTCATCAGTCTTTCTATGATGCAGGGAAC  150

seq1  ATCAGAGAACAGAAGGGAGAAAAAAATGTAAGAGCTAAAGGACAAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAACAGAAGGGAGAAAAAAATGTAAGAGCTAAAGGACAAGAAGC  200

seq1  AAAAGCATTCTGTGGTATCTGACGTTGGGATATGGCACACTTGATGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATTCTGTGGTATCTGACGTTGGGATATGGCACACTTGATGTACT  250

seq1  CCTCTCAAGTACACAGCAGCTATGGCTACCGACACAAGTTTGTATAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAAGTACACAGCAGCTATGGCTACCGACACAAGTTTGTATAAAGA  300

seq1  AAAATAAGCTGTAGTGGTAGGAGCAAGACCAGCTGGGAAGATTTGCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGCTGTAGTGGTAGGAGCAAGACCAGCTGGGAAGATTTGCCCAT  350

seq1  GTGAGAAATGGCTAAGAGTCTAATGAGTGAATAGGAGATGAATACATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAATGGCTAAGAGTCTAATGAGTGAATAGGAGATGAATACATTGT  400

seq1  ATGCATATATGAAATTATATCAAAAATTAAATTTAAATAATAACGACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATATGAAATTATATCAAAAATTAAATTTAAATAATAACGACAAC  450

seq1  CATAATCTCTAGGAAATAAACAGATCCCATTATTGTACTATCACTACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCTCTAGGAAATAAACAGATCCCATTATTGTACTATCACTACTGG  500

seq1  ATTAGAATAATTTGACTATTTTTATTTTCCGTGATGACTTTCCATCACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATAATTTGACTATTTTTATTTTCCGTGATGACTTTCCATCACTA  550

seq1  CAACATCTGAGATAATTGATTTATAAAGAAAAATTATTGAAGAATTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCTGAGATAATTGATTTATAAAGAAAAATTATTGAAGAATTTTGG  600

seq1  AGGTTTGGGTCTGTGGTTGATTATTCTAATTGTTTTGTAACTTGTAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGGGTCTGTGGTTGATTATTCTAATTGTTTTGTAACTTGTAGTAA  650

seq1  GGTCCCATGGTAGGATCCAGGGGAGGAAACACATCACATTGTGCCCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCATGGTAGGATCCAGGGGAGGAAACACATCACATTGTGCCCTGGG  700

seq1  ATAAAAAAGAAAGAAGAAATGGCCAGAGTTGGGCAATTCCATTCAAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAGAAAGAAGAAATGGCCAGAGTTGGGCAATTCCATTCAAGGGC  750

seq1  TTGTTCCTACTGATAGCCTTGATTGGCCCATCTCTAGATGTTCCGACAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTACTGATAGCCTTGATTGGCCCATCTCTAGATGTTCCGACAAC  800

seq1  TTCCAAGCTGCCTTGTCATAGACCAATCCAAATGCATCACATAATTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGCTGCCTTGTCATAGACCAATCCAAATGCATCACATAATTCTTT  850

seq1  GGAGGGACTTAAAAATCAAACTACAATACCAATAAAATTCTGATGAATTT  900
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  GGAGGGACTT-AAAATCAAACTACAATACCAAT-AAATTCTGATGAATTT  898

seq1  ATCTCATTACCTCATATTCTGTTT-GGTGAGTAGCAGATTGTTAATATTT  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCTCATTACCTCATATTCTGTTTGGGTGAGTAGCAGATTGTTAATATTT  948

seq1  ATAAAACTACACTAAAATAGGGATTCTTATAACTGACACACT-AAATATA  998
      ||||||||||||||||||||||| |||||| ||||||||||| |||||||
seq2  ATAAAACTACACTAAAATAGGGA-TCTTAT-ACTGACACACTAAAATATA  996

seq1  GAAAAGTCGCTGGGAAGGCTACT-GGCCTTGTCCTAAGGAAACAGGAA-G  1046
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  GAAAAGTCGCTGGGAAGGCTACTGGGCCTTGTCCTAAGGAAACAGGAAGG  1046

seq1  AGTATGAAGTGTAATG-TCATAGGCACATTTCCTTGTTTTCAGCCATGGA  1095
      |||||||||||||||| ||||| |||||||||||||||||||| ||||||
seq2  AGTATGAAGTGTAATGTTCATA-GCACATTTCCTTGTTTTCAGTCATGGA  1095

seq1  ATCACACTAAGACAAAGCACTCGCCAGCTGTCAGCCTCCCTCAGACTTCT  1145
      |||||||||  |||||||||||| ||||||||||||| |||| |||||||
seq2  ATCACACTAGAACAAAGCACTCG-CAGCTGTCAGCCTTCCTC-GACTTCT  1143

seq1  CAGCCTAGAG-GAATTTGAGAACAAATGCTCAGCCATTATAAATCTCCTA  1194
       ||||| ||| ||||| || ||| ||||||||| ||||||||||| ||||
seq2  -AGCCT-GAGAGAATTGGA-AAC-AATGCTCAG-CATTATAAATC-CCTA  1187

seq1  TTA  1197
      |||
seq2  TTA  1190

seq1: chr15_9983889_9984993
seq2: B6Ng01-051E16.g_67_1173 (reverse)

seq1  ACCG-TCATTTTCCTAAGCCAATGTA-TCCCTGCC-ATATCCCTTCCATG  47
      |||| ||||||||||||||||| ||| |||||||| |||||| ||||| |
seq2  ACCGTTCATTTTCCTAAGCCAAGGTATTCCCTGCCAATATCCTTTCCAGG  50

seq1  ATGTTTAGCCTT-CCCTTGGCCTAC-AGTCCTGAAGCCAG-CCAGTGAGG  94
      ||| |||||||| |||||||| ||| |||||||||||||| ||||| |||
seq2  ATG-TTAGCCTTCCCCTTGGCATACAAGTCCTGAAGCCAGCCCAGT-AGG  98

seq1  GATTGAAATCTCTGTTGTCCATTTCCCCCTGGTATTTGTCACAGTGATTT  144
      || || |||||||| ||||||||||||||||||| |||||||||||| ||
seq2  GA-TGGAATCTCTG-TGTCCATTTCCCCCTGGTA-TTGTCACAGTGA-TT  144

seq1  TGTGAATAAATTTCTGAAAACAAGAATTTAGTTGTAAGTTTTACTTGGAG  194
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTG-ATAAATTTCTGAAAACAAGAA-TTAGTTGTAAGTTTTACTTGGAG  192

seq1  TCCATAATGTATTAATAATGTCCACCAAACTTTGATATGTAATTCTATTG  244
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAT-ATGTATTAATAATGTCCACCAAACTTTGATATGTAATTCTATTG  241

seq1  -AAATGATGTCTTTGTGGTTATAA-TTGGTTAAGTACTTAAGGATG-AAA  291
       ||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  AAAATGATGTCTTTGTGGTTATAATTTGGTTAAGTACTTAAGGATGAAAA  291

seq1  TCATGTTGGATTTAG-ACTAGATCCTAAATCTAGTGACAGCTCTCTCTAT  340
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  TCATGTTGGAATTAGAACTAGATCCTAAATCTAGTGACAGCTCTCTCTAT  341

seq1  AAG-AAAAGTAGATCCAGGAAGACAGAGGGGGAAGGACCACATGAAGATG  389
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGTAGATCCAGGAAGACAGAGGGGGAAGGACCACATGAAGATG  391

seq1  GAAATAAGTAGATATAGGAGTTATGTTATTAAAAGCCAAGGAATGCCATG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGTAGATATAGGAGTTATGTTATTAAAAGCCAAGGAATGCCATG  441

seq1  GCATCTAAAAGTTGAAAAAGGAAAGGAAAACAAAATCTTCCCAATGACTC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAAAAGTTGAAAAAGGAAAGGAAAACAAAATCTTCCCAATGACTC  491

seq1  TAAAGGAGAGCGTGTTTCCCCCTGACACCCTAATCTCAGATATTTAAACA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAGAGCGTGTTTCCCCCTGACACCCTAATCTCAGATATTTAAACA  541

seq1  CAAGAATGCCTAGTGAAAAGGCTCCAGTGTTTTCCAGACACTGAGTTATG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGCCTAGTGAAAAGGCTCCAGTGTTTTCCAGACACTGAGTTATG  591

seq1  GAACTCCCTTATGTCAACACAAATTTCTCTTGTGATTGCAGATTGATATT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCCTTATGTCAACACAAATTTCTCTTGTGATTGCAGATTGATATT  641

seq1  AGCGATGGCTACAGTCATCTGAAGCTTGATTGGGCTAGATTAGCAGGATG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATGGCTACAGTCATCTGAAGCTTGATTGGGCTAGATTAGCAGGATG  691

seq1  ACTCAATGCCTTTCCTGGTAAGTCACTGCTGGCTGTTGGCTAGGCGCTCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATGCCTTTCCTGGTAAGTCACTGCTGGCTGTTGGCTAGGCGCTCA  741

seq1  GCCACACCTGTCACCTGGGGGCCGCAATCATTTTCCCTGCTAGCTTGCCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCTGTCACCTGGGGGCCGCAATCATTTTCCCTGCTAGCTTGCCA  791

seq1  TTGAACTACTCAGATGTCCACAGACTGGCAGGGCAAACTTGCAAGAGGGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTACTCAGATGTCCACAGACTGGCAGGGCAAACTTGCAAGAGGGT  841

seq1  GTGTCCTGAGAACTAGCTTCGCAGGGCGCATGCAGCTACTGCAAGCATTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTGAGAACTAGCTTCGCAGGGCGCATGCAGCTACTGCAAGCATTT  891

seq1  AGGTTACTCATCTCCAGGAATTCCTAAGTTCAACCTCCACTGCATGATAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTCATCTCCAGGAATTCCTAAGTTCAACCTCCACTGCATGATAG  941

seq1  TCATCAGGAAGCCATGATCTTTAGCTTAGGTCTAAGAAAAGAAAATTTGG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGGAAGCCATGATCTTTAGCTTAGGTCTAAGAAAAGAAAATTTGG  991

seq1  ACTCCACACTTCCTTTACTGAAAAATACAGAAAATGTTTTATGCACATCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACACTTCCTTTACTGAAAAATACAGAAAATGTTTTATGCACATCT  1041

seq1  TAAATCAGTCCTAGGGGTCCAAATTATCATGCTACCATTTTCCACTAAGA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAGTCCTAGGGGTCCAAATTATCATGCTACCATTTTCCACTAAGA  1091

seq1  ACAAATCCTGGAATTC  1105
      ||||||||||||||||
seq2  ACAAATCCTGGAATTC  1107