BAC Information

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BAC

Clone NameB6Ng01-052D21
Chromosome15 (Build37)
Map Location 24,027,120 - 24,157,044
singlet/doubletdoublet
Overlap geneLOC666989
Upstream geneLOC624863
Downstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052D21.bB6Ng01-052D21.g
ACCDH875653DH875654
length1,0451,121
definitionDH875653|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D21, 5' end.DH875654|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,027,120 - 24,028,185)(24,155,912 - 24,157,044)
sequence
gaattctgagtgaaattattataaaagcatctttacatccctaagccttt
tatgagatatctcaagacaccacatatcattttaatttctacagagcgtt
tcccttgtgtctgagaaaatatatgaaaatacagatggtttctcctgagt
gcatttttcttgatgagtgtttgacagcaatttcatttgtgtttaccttc
tttcatcgttctctactaggcaaaaaaataatgatgataataaaaatatg
acattagtttccaaaattcatggatttagtataggaaaaaccctgtgctg
tcacaatagttgtgaatgatagggctaggctttccaggtttatatttgct
attctgatttcagagatttaagtataaagatcacccatgtgatttgatta
tatgtgttggccactatgtagacagacagacagacaggcaggcaggcagg
caggcaggcaggcagacagacagacagacagacagacagacagacagaca
gatagatagatagatagatagataggcaggcaggcaggcaggcagacaga
cagacagacagacagatagatagatctacatgacacatggcatgtattag
acttaagttatgtataaagatgcagagatgggttttggttaagaacagtt
gatgtttttgcagagacactgagtgctagtctttccactcaaactgaaaa
gatcataactgcctctaactcctgctctgagaaaccagtcactcctttcc
aaaccctacatgcattagaatggacatgtgcatgtacacagatgggcata
taaaaatagaaatgagtgctaaagagagagatatatgaaataattttatc
catttttgccgcagtcaaaagcagacatagcacagtaaacagatattatt
taaatattctacatatattccatgttatttatgcaatgtttgtatgtggc
attgtatagaataatactcattttaatgatatttgaacatttattcgact
atatcatgatcatgtgaataagttcatattattacatcattcact
gaattctctccaacggaggagtgagacactatgaatagatgcatggtaca
ctagagacaaacattgatatcatcatgtttaagaacccctaaaataaaat
gcctccaacaagttaactcaaagagaggagaggtagttaagtcactgctg
agttttaccatgaggaaaaggaccagataagtgctctagtgtcgttccag
ttggttgagaatgttctaaacctgttggtagtgacaattgtgttagtaga
cagacatgctaaaattcttgaattctatgctggatgtaattaattggttg
tatgtgagctacatattgtgaattaaaatctcaatccaactgtgatatga
agagggaataagtgtactggtgtaaaatatgcatatcaatggtccctctc
ctaaatatttccatctgtgcttcatttccttccaggttctttttttaaaa
ttcaaattcattaaaatgttatcatcagtactacttatgcatgcgtatct
tctcaaccttaaaatcatctttttcggtattggttaattaatgaagctat
taaaacacaatgggaagatgtgtggtacatctctgtaatatccaaaattg
gcaatctaaggcaaaacagcagctactttcaaaggcccagtgtaacaaaa
ttatttctcttcttacaaaatgaagttaaacctaaaggattgtggctgca
ggtcagaaagtatctgattattttattcaaggtctcagtctctgtccaca
atacgggaagttaataaatatcataaaatcacaaaaataagtttttaaca
aatgcaataattcttaaaggacagtttccatgataacactgtagatttat
gtacactgatgcttttatgtatgaaatactgcaaacacatacaagagcta
agtcattttggaatgtttgattttatgtagaagagagcaacatatgaacc
aaccataccccagagcttcagggactaaactaccaaccaagagtaacatg
aagggacacatggttcgagctgcatatgtagcagagatggccttgtggac
atccatggtaaggtgaggcccttggtctgaaaggctcaggtcccatgtaa
gggaaatgccaagccagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_24027120_24028185
seq2: B6Ng01-052D21.b_45_1089

seq1  GAATTCTGAGTGAAATTATTATAAAAGCATCTTTACATCCCTAAGCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTGAAATTATTATAAAAGCATCTTTACATCCCTAAGCCTTT  50

seq1  TATGAGATATCTCAAGACACCACATATCATTTTAATTTCTACAGAGCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATATCTCAAGACACCACATATCATTTTAATTTCTACAGAGCGTT  100

seq1  TCCCTTGTGTCTGAGAAAATATATGAAAATACAGATGGTTTCTCCTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTGTCTGAGAAAATATATGAAAATACAGATGGTTTCTCCTGAGT  150

seq1  GCATTTTTCTTGATGAGTGTTTGACAGCAATTTCATTTGTGTTTACCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTCTTGATGAGTGTTTGACAGCAATTTCATTTGTGTTTACCTTC  200

seq1  TTTCATCGTTCTCTACTAGGCAAAAAAATAATGATGATAATAAAAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCGTTCTCTACTAGGCAAAAAAATAATGATGATAATAAAAATATG  250

seq1  ACATTAGTTTCCAAAATTCATGGATTTAGTATAGGAAAAACCCTGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGTTTCCAAAATTCATGGATTTAGTATAGGAAAAACCCTGTGCTG  300

seq1  TCACAATAGTTGTGAATGATAGGGCTAGGCTTTCCAGGTTTATATTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATAGTTGTGAATGATAGGGCTAGGCTTTCCAGGTTTATATTTGCT  350

seq1  ATTCTGATTTCAGAGATTTAAGTATAAAGATCACCCATGTGATTTGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATTTCAGAGATTTAAGTATAAAGATCACCCATGTGATTTGATTA  400

seq1  TATGTGTTGGCCACTATGTAGACAGACAGACAGACAGGCAGGCAGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTGGCCACTATGTAGACAGACAGACAGACAGGCAGGCAGGCAGG  450

seq1  CAGGCAGGCAGGCAGACAGACAGACAGACAGACAGACAGACAGACAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGCAGGCAGACAGACAGACAGACAGACAGACAGACAGACAGACA  500

seq1  GATAGATAGATAGATAGATAGATAGGCAGGCAGGCAGGCAGGCAGACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGGCAGGCAGGCAGGCAGGCAGACAGA  550

seq1  CAGACAGACAGACAGATAGATAGATCTACATGACACATGGCATGTATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGACAGATAGATAGATCTACATGACACATGGCATGTATTAG  600

seq1  ACTTAAGTTATGTATAAAGATGCAGAGATGGGTTTTGGTTAAGAACAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGTTATGTATAAAGATGCAGAGATGGGTTTTGGTTAAGAACAGTT  650

seq1  GATGTTTTTGCAGAGACACTGAGTGCTAGTCTTTCCACTCAAACTGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTTGCAGAGACACTGAGTGCTAGTCTTTCCACTCAAACTGAAAA  700

seq1  GATCATAACTGCCTCTAACTCCTGCTCTGAGAAACCAGTCACTCCTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATAACTGCCTCTAACTCCTGCTCTGAGAAACCAGTCACTCCTTTCC  750

seq1  AAACCCTACATGCATTAGAATGGACATGTGCATGTACACAGATGGGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTACATGCATTAGAATGGACATGTGCATGTACACAGATGGGCATA  800

seq1  TAAAAATAGAAATGAGTGCTAAAGAGAGAGATATATGAAATAATTTTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGAAATGAGTGCTAAAGAGAGAGATATATGAAATAATTTTATC  850

seq1  CATTTTTGCCGCAGTCAAAAGCAAGACATAGCACAGTAAAACAGATATTT  900
      |||||||||||||||||||||| |||||||||||||| ||||||||||| 
seq2  CATTTTTGCCGCAGTCAAAAGC-AGACATAGCACAGT-AAACAGATATT-  897

seq1  ATTTTAAATATTCTACATATATTCCATGTTTAATTTATGCAAATGTTTGT  950
        ||||||||||||||||||||||||||||  |||||||| |||||||| 
seq2  -ATTTAAATATTCTACATATATTCCATGTT--ATTTATGC-AATGTTTG-  942

seq1  TATGTGGCATTGTATAGAAATAATACTTAATTTTAAATGATATTTGAAAC  1000
      ||||||||||||||||| ||||||||| |  ||| ||||||||||| |||
seq2  TATGTGGCATTGTATAG-AATAATACTCA--TTTTAATGATATTTG-AAC  988

seq1  ATTTATTCGACTATAATTCATGATCATGTGAAATAAAGTTTCAATATTAT  1050
      |||||||||||||||  |||||||||||||||   |||||   |||||||
seq2  ATTTATTCGACTATA--TCATGATCATGTGAA--TAAGTT--CATATTAT  1032

seq1  TTACAAATCATTCACT  1066
      |   | ||||||||||
seq2  T---ACATCATTCACT  1045

seq1: chr15_24155912_24157044
seq2: B6Ng01-052D21.g_67_1187 (reverse)

seq1  TTCCCTGCCCTGGCA-TTCCCCTACACTGGGACCTTGAGCCTTCTCAGGA  49
      ||||||| | ||||| ||||| |||| ||||||| |||||||| ||| ||
seq2  TTCCCTGGCTTGGCATTTCCCTTACA-TGGGACC-TGAGCCTT-TCA-GA  46

seq1  CCAAGGGCCTCACC-TACCATTGATGTCCAACAAGGCCATCCTCTGCTAC  98
      |||||||||||||| |||||| ||||||| |||||||||| |||||||||
seq2  CCAAGGGCCTCACCTTACCATGGATGTCC-ACAAGGCCAT-CTCTGCTAC  94

seq1  ATATGCAGCTCGAACCATGTGTCCCTTCATGTGTACTCTTTGGTTGGTAG  148
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  ATATGCAGCTCGAACCATGTGTCCCTTCATGT-TACTC-TTGGTTGGTAG  142

seq1  TTTAGTCCCTGGAAGCTCTGGGGGTATTGGTTGGTTCATATTGTTGCTCT  198
      |||||||||| |||||||| |||||| ||||||||||||| |||||||| 
seq2  TTTAGTCCCT-GAAGCTCT-GGGGTA-TGGTTGGTTCATA-TGTTGCTC-  187

seq1  TCTTCTACATTAAATTCAAACATTCCAAAATGACTTAGCTCTTGTATGTG  248
      ||||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  TCTTCTACA-TAAAATCAAACATTCCAAAATGACTTAGCTCTTGTATGTG  236

seq1  TTTGCAGTATTTCATACATAAAAGCATCAGTGTACATAAATCTACAGTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTATTTCATACATAAAAGCATCAGTGTACATAAATCTACAGTGT  286

seq1  TATCATGGAAACTGTCCTTTAAGAATTATTGCATTTGTTAAAAACTTATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGGAAACTGTCCTTTAAGAATTATTGCATTTGTTAAAAACTTATT  336

seq1  TTTGTGATTTTATGATATTTATTAACTTCCCGTATTGTGGACAGAGACTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATTTTATGATATTTATTAACTTCCCGTATTGTGGACAGAGACTG  386

seq1  AGACCTTGAATAAAATAATCAGATACTTTCTGACCTGCAGCCACAATCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGAATAAAATAATCAGATACTTTCTGACCTGCAGCCACAATCCT  436

seq1  TTAGGTTTAACTTCATTTTGTAAGAAGAGAAATAATTTTGTTACACTGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTAACTTCATTTTGTAAGAAGAGAAATAATTTTGTTACACTGGG  486

seq1  CCTTTGAAAGTAGCTGCTGTTTTGCCTTAGATTGCCAATTTTGGATATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAAGTAGCTGCTGTTTTGCCTTAGATTGCCAATTTTGGATATTA  536

seq1  CAGAGATGTACCACACATCTTCCCATTGTGTTTTAATAGCTTCATTAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGTACCACACATCTTCCCATTGTGTTTTAATAGCTTCATTAATT  586

seq1  AACCAATACCGAAAAAGATGATTTTAAGGTTGAGAAGATACGCATGCATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATACCGAAAAAGATGATTTTAAGGTTGAGAAGATACGCATGCATA  636

seq1  AGTAGTACTGATGATAACATTTTAATGAATTTGAATTTTAAAAAAAGAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTACTGATGATAACATTTTAATGAATTTGAATTTTAAAAAAAGAAC  686

seq1  CTGGAAGGAAATGAAGCACAGATGGAAATATTTAGGAGAGGGACCATTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGAAATGAAGCACAGATGGAAATATTTAGGAGAGGGACCATTGA  736

seq1  TATGCATATTTTACACCAGTACACTTATTCCCTCTTCATATCACAGTTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATATTTTACACCAGTACACTTATTCCCTCTTCATATCACAGTTGG  786

seq1  ATTGAGATTTTAATTCACAATATGTAGCTCACATACAACCAATTAATTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGATTTTAATTCACAATATGTAGCTCACATACAACCAATTAATTAC  836

seq1  ATCCAGCATAGAATTCAAGAATTTTAGCATGTCTGTCTACTAACACAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCATAGAATTCAAGAATTTTAGCATGTCTGTCTACTAACACAATT  886

seq1  GTCACTACCAACAGGTTTAGAACATTCTCAACCAACTGGAACGACACTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTACCAACAGGTTTAGAACATTCTCAACCAACTGGAACGACACTAG  936

seq1  AGCACTTATCTGGTCCTTTTCCTCATGGTAAAACTCAGCAGTGACTTAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTATCTGGTCCTTTTCCTCATGGTAAAACTCAGCAGTGACTTAAC  986

seq1  TACCTCTCCTCTCTTTGAGTTAACTTGTTGGAGGCATTTTATTTTAGGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTCCTCTCTTTGAGTTAACTTGTTGGAGGCATTTTATTTTAGGGG  1036

seq1  TTCTTAAACATGATGATATCAATGTTTGTCTCTAGTGTACCATGCATCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAACATGATGATATCAATGTTTGTCTCTAGTGTACCATGCATCTA  1086

seq1  TTCATAGTGTCTCACTCCTCCGTTGGAGAGAATTC  1133
      |||||||||||||||||||||||||||||||||||
seq2  TTCATAGTGTCTCACTCCTCCGTTGGAGAGAATTC  1121