BAC Information

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BAC

Clone NameB6Ng01-055A01
Chromosome15 (Build37)
Map Location 49,449,978 - 49,451,152
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneLOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055A01.bB6Ng01-055A01.g
ACCDH877588DH877589
length1,0451,140
definitionDH877588|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A01, 5' end.DH877589|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaaaagagtaaagtaaaatggctgagaaacaaagattattcaa
cacccttaaacaccacagaattcaagttatgggagagaaagatttcatct
tgcacccataagaagtgctaaagtcaataaaaccaatgtcagctcatgca
ggttaggatttaaataacggagaacaacccagtgcttgtgagactggaaa
tttgtgtgaagcaactatgaaaattaggttgacagttgctcaggaagatg
gaaattgatctaacttaagatccagctataccaccctgagcatattttaa
aaagtgcatttcatcctaagacaaagacacttgctcaatcattctaatca
ttatacacagacattggaaacaacctagatgaccctctatagaagcatac
agaaaaatttcatacatttatacaatgaagtatcatttttaaaaattata
caatggggccattaaagagtggcattataaaatttgttgacaaattgagg
aataagaaaaaaaaaatcatccgagtgagatatttctgaactggaaatgg
aagcatggtgttttcttacatgtagatataagtcattgataaactaccaa
ttcacagaaacacaaaaggtaggtatagagtagggatgcatgtctcctta
ggaaagtgaaatagaagagattattgtggatggacagagatgggggctgt
tgtggaagcatcaagtgtggagggggaggaaattggagtcaggtaactaa
aactaagcaacttttcagagaaaatattgaataataatacagtagaagat
tcctgaaatatatacatatatgaaggtgatctgtaaaaaactgcaaaata
ttgaaagagacagaaccaacagactatctctttttcataaataaaggttc
cagtacagggcacatgttatattctattgaagttttgaaaaagaggctcc
atgggaatcctaaacacccaggccattccagtcattaggttgttcttaaa
gaaagcaggccccattgctgagacatgctattagactcatgacaa
gaattccatgaaaggttttgtgacttttctccttgattggttagttctat
ctctaggggtttatttgattctataattccatggggctctggaggctttc
cagggtggttgctttctcattctagctacctaattttgcatcaagacaga
taaaaaggtggtgcctgtgcctgtgcctgtgcctgtgcctgtgcctgtgc
ctgtagctgaccaaaggttactggatctgagttctcatttctgggacaga
acaacttaggcctactctcgtgaattgtcagtttgctgcctgtcatagag
tcagcctgcctctgactaactcagtcctctcattatgactatacttgcac
ctttcttgtggctctaagctcagcaactctattaatattcatgctcacca
caaaagaggagtttcaatatagtgaaatatattaaaaatttcaaaacaga
tgtctgtagacataaattttgtagcaggagtgaaagtccttgaaaacata
gtaattaggaatgcaattgcaaatacaatccaattagagtgtgtgataac
ttttactctcacttgttaatagaagagagtaagagtattgttttcagcag
aataaacagaatcataataattttgcagtatcatgttgaaattgatgcaa
catttgaaaatctatgttattatatataagaaagggaaagctaattttca
ttggtttgccagtataaaattcaagatataaaccattccctttatgaaaa
atagtgttactatgaaatcgttaatgtatttttgctgagcaaaatatact
gaactattggctctctggcagctttctgaactcatttacatagaaataaa
aagaataaggcaaggcaagaacaattcccctattttctatagaccttaac
aacatctttgtacacactaacattttatttcccttttcaggccatagagc
tttgaatctcatactgaaatgttatttcaatcagatgatgtgtagatata
tcccatttgttctttaataagaatatgctggttttacactttctgacttt
tttgtgctacactatgatgatccatggattttgtctttcagtaaataatt
agtccaattgccagagaaggatgagctcagatcatgccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_49449978_49451152
seq2: B6Ng01-055A01.g_60_1199

seq1  GAATTCCATGAAAGGTTTTGTGACTTTTCTCCTTGATTGGTTAGTTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAAAGGTTTTGTGACTTTTCTCCTTGATTGGTTAGTTCTAT  50

seq1  CTCTAGGGGTTTATTTGATTCTATAATTCCATGGGGCTCTGGAGGCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGGTTTATTTGATTCTATAATTCCATGGGGCTCTGGAGGCTTTC  100

seq1  CAGGGTGGTTGCTTTCTCATTCTAGCTACCTAATTTTGCATCAAGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGGTTGCTTTCTCATTCTAGCTACCTAATTTTGCATCAAGACAGA  150

seq1  TAAAAAGGTGGTGCCTGTGCCTGTGCCTGTGCCTGTGCCTGTGCCTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGTGGTGCCTGTGCCTGTGCCTGTGCCTGTGCCTGTGCCTGTGC  200

seq1  CTGTAGCTGACCAAAGGTTACTGGATCTGAGTTCTCATTTCTGGGACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTGACCAAAGGTTACTGGATCTGAGTTCTCATTTCTGGGACAGA  250

seq1  ACAACTTAGGCCTACTCTCGTGAATTGTCAGTTTGCTGCCTGTCATAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTAGGCCTACTCTCGTGAATTGTCAGTTTGCTGCCTGTCATAGAG  300

seq1  TCAGCCTGCCTCTGACTAACTCAGTCCTCTCATTATGACTATACTTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGCCTCTGACTAACTCAGTCCTCTCATTATGACTATACTTGCAC  350

seq1  CTTTCTTGTGGCTCTAAGCTCAGCAACTCTATTAATATTCATGCTCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGTGGCTCTAAGCTCAGCAACTCTATTAATATTCATGCTCACCA  400

seq1  CAAAAGAGGAGTTTCAATATAGTGAAATATATTAAAAATTTCAAAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGGAGTTTCAATATAGTGAAATATATTAAAAATTTCAAAACAGA  450

seq1  TGTCTGTAGACATAAATTTTGTAGCAGGAGTGAAAGTCCTTGAAAACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTAGACATAAATTTTGTAGCAGGAGTGAAAGTCCTTGAAAACATA  500

seq1  GTAATTAGGAATGCAATTGCAAATACAATCCAATTAGAGTGTGTGATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGGAATGCAATTGCAAATACAATCCAATTAGAGTGTGTGATAAC  550

seq1  TTTTACTCTCACTTGTTAATAGAAGAGAGTAAGAGTATTGTTTTCAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCTCACTTGTTAATAGAAGAGAGTAAGAGTATTGTTTTCAGCAG  600

seq1  AATAAACAGAATCATAATAATTTTGCAGTATCATGTTGAAATTGATGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGAATCATAATAATTTTGCAGTATCATGTTGAAATTGATGCAA  650

seq1  CATTTGAAAATCTATGTTATTATATATAAGAAAGGGAAAGCTAATTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAAATCTATGTTATTATATATAAGAAAGGGAAAGCTAATTTTCA  700

seq1  TTGGTTTGCCAGTATAAAATTCAAGATATAAACCATTCCCTTTATGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGCCAGTATAAAATTCAAGATATAAACCATTCCCTTTATGAAAA  750

seq1  ATAGTGTTACTATGAAATCGTTAATGTATTTTTGCTGAGCAAAATATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTTACTATGAAATCGTTAATGTATTTTTGCTGAGCAAAATATACT  800

seq1  GAACTATTGGCTCTCTGGCAGCTTTCTGAACTCATTTACATAGAAATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTGGCTCTCTGGCAGCTTTCTGAACTCATTTACATAGAAATAAA  850

seq1  AAGAATAAGGGCAAGGCAAGAACAATTCCCCTATTTTCTATAGACCTTAA  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAA-GGCAAGGCAAGAACAATTCCCCTATTTTCTATAGACCTTAA  899

seq1  CAACATCTTTGTAACAACACTAACATTTTATTTCCCTTTTCCAGGCCATA  950
      |||||||||||||   |||||||||||||||||||||||| |||||||||
seq2  CAACATCTTTGTA--CACACTAACATTTTATTTCCCTTTT-CAGGCCATA  946

seq1  GAGCTTTGAAATCTCATACTTGAAATGTATATTTCAATCAGATGAATGTT  1000
      |||||||| |||||||||| |||||||| ||||||||||||||| ||| |
seq2  GAGCTTTG-AATCTCATAC-TGAAATGT-TATTTCAATCAGATG-ATG-T  991

seq1  GTAGAATTAATTATTCCCATTTGTTTCTTTAAATAAAAATATTGCTGGTT  1050
      |||||  ||     ||||||||| |||||| ||||| |||| ||||||||
seq2  GTAGATATA-----TCCCATTTG-TTCTTT-AATAAGAATA-TGCTGGTT  1033

seq1  TTAACACTTTTCTTGAC-TTTTTGTGCTACACTTATGAATGATCACATGG  1099
      || |||||||   |||| |||||||||||||| |||| |||||| |||||
seq2  TT-ACACTTT--CTGACTTTTTTGTGCTACAC-TATG-ATGATC-CATGG  1077

seq1  ATTTTTGTCTTTCAAGTAAAATTACATTAGGTTCCAATTTGCCAGAAGAA  1149
      | ||||||||||| ||||||  || |||||  ||||| ||||||| ||||
seq2  A-TTTTGTCTTTC-AGTAAA--TA-ATTAG--TCCAA-TTGCCAG-AGAA  1118

seq1  GGAGTGAGCTTCAGGAATCATGCCCA  1175
      ||| ||||| ||||  ||||||||||
seq2  GGA-TGAGC-TCAG--ATCATGCCCA  1140