BAC Information

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BAC

Clone NameB6Ng01-055A07
Chromosome15 (Build37)
Map Location 100,677,091 - 100,822,872
singlet/doubletdoublet
Overlap geneScn8a
Upstream geneLOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8
Downstream geneEG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055A07.bB6Ng01-055A07.g
ACCDH877600DH877601
length429111
definitionDH877600|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A07, 5' end.DH877601|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,677,091 - 100,677,525)(100,822,762 - 100,822,872)
sequence
accaacgttaagaagtggggacatatgtttcctttctcactttataataa
tctctctctctctctctctttctctctctccctctctctctctctctgtg
tggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggcgtgggtgtgagc
gcgtacgtgctagtgtgctggggatagcctgggcctcccggttcaacctc
ttaagtgcatggattaaaatggaggaaatttaatagcaacacgtgaatgg
ctttttgattgcaaaaacagttgctttaaaatactcatttctaaaaaaaa
atattaatttcttctgtatttatttacccagtaattacctgattgtttat
ctgcttgttttattatcatggactttttattcttggttcagccaatggac
tatacaattctccttagtcattaattaaa
aacggcattttttgaggggttttgtctcataatgctttgtgagggttctc
tctctctttctctcttgatagaatagagtttatttagggcatggggaggg
gagttgggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100677091_100677525
seq2: B6Ng01-055A07.b_47_481

seq1  GAATTCACCAACGTTAAGAAGTGGGGACATATGTTTCCTTTCTCACTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAACGTTAAGAAGTGGGGACATATGTTTCCTTTCTCACTTTA  50

seq1  TAATAATCTCTCTCTCTCTCTCTCTTTCTCTCTCTCCCTCTCTCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATCTCTCTCTCTCTCTCTCTTTCTCTCTCTCCCTCTCTCTCTCTC  100

seq1  TCTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCCCAGGCT  150
      |||||||||||||||||||||||||||||||||||||||| | |  || |
seq2  TCTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGCGTGGGT  150

seq1  CTAACCTCAGACTTACTACATAGCTGGGGATAGCCTGGCCCTCCCGGTTC  200
       | | | |  || | |||    |||||||||||||||| |||||||||||
seq2  GTGAGCGCGTACGTGCTAGTGTGCTGGGGATAGCCTGGGCCTCCCGGTTC  200

seq1  AACCTCTTAAGTGCAGGGATTAAAATGGAGGAAATTTAATAGCAACACGT  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACCTCTTAAGTGCATGGATTAAAATGGAGGAAATTTAATAGCAACACGT  250

seq1  GAATGGCTTTATGATTGCAAAAACAGTTGCTTTAAAATACTCATTCCTAA  300
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  GAATGGCTTTTTGATTGCAAAAACAGTTGCTTTAAAATACTCATTTCTAA  300

seq1  GAAAAAATATTAATTTCTTCTGTATTTATTTACCCAGTAATTACCTGATT  350
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATTAATTTCTTCTGTATTTATTTACCCAGTAATTACCTGATT  350

seq1  GTTTATCTGCTTGCTTTATTATCATGGACTTTGGATTCTTGGTTTAGTCA  400
      ||||||||||||| ||||||||||||||||||  |||||||||| || ||
seq2  GTTTATCTGCTTGTTTTATTATCATGGACTTTTTATTCTTGGTTCAGCCA  400

seq1  ATGGACTACACAATTCTCCTTAGTCATTAATTAAA  435
      |||||||| ||||||||||||||||||||||||||
seq2  ATGGACTATACAATTCTCCTTAGTCATTAATTAAA  435

seq1: chr15_100822762_100822872
seq2: B6Ng01-055A07.g_74_184 (reverse)

seq1  ACCCCCAACTCCCCTCCCCATGCCCTAAATAAACTCTATTCTATCAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAACTCCCCTCCCCATGCCCTAAATAAACTCTATTCTATCAAGAG  50

seq1  AGAAAGAGAGAGAGAACCCTCACAAAGCATTATGAGACAAAACCCCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGAGAGAACCCTCACAAAGCATTATGAGACAAAACCCCTCAA  100

seq1  AAAATGCCGTT  111
      |||||||||||
seq2  AAAATGCCGTT  111