BAC Information

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BAC

Clone NameB6Ng01-060A01
Chromosome15 (Build37)
Map Location 33,151,200 - 33,262,554
singlet/doubletdoublet
Overlap genePgcp
Upstream gene0610007N19Rik, Sema5a, LOC100040962, Sdc2
Downstream gene1700084J12Rik, Tspyl5, LOC675463, Mtdh, Laptm4b, Matn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060A01.bB6Ng01-060A01.g
ACCDH881113DH881114
length1,1531,094
definitionDH881113|Mus musculus domesticus DNA, BAC clone: B6Ng01-060A01, 5' end.DH881114|Mus musculus domesticus DNA, BAC clone: B6Ng01-060A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,151,200 - 33,152,373)(33,261,452 - 33,262,554)
sequence
tggtgcttgaggtgaattggtccgacttccagaagagaaggttccccccc
gcccccaggaaaagccagtgcagttacctgacagtgagtaaacccggtgt
ttctcgtggtttcgtcagatctaccatcgcctgccagcctgacctgcttt
gaccccgcagactgtccctgtcccctctgaacaaaaggatggctgttgca
cagcagccctatggtttggcacagttgttgcaggtacttaaaatggctgc
ctgaacttaaactgggagggtagccattaggagatatttcttaggagtct
tgtgatttggagactccatttgttcttcattcctccctaaatggccaacc
accacggacaaggaatcacctgccactcatgatcccagcactcacagaac
aggagcagggcagggatgccggatggagctaactgggctaccgagggaca
cctggcgaagcaggtaatggccttacactatacagatgatgcagatgtct
ccatatccttactactgaaccacaagtgataccctgaaagcccctggaat
atgcagtgcaccaatgtaaggtacaagttccagattacacaagcagagag
tagtggcatcgcactgaatgcaagaaactgaagttccaggccttagaatt
agtaatgtatgcttaagagtgtccagtcctcaggacagatgtaggaagtt
tggaagcagtgagatataagtagaagtgttttgtaagtgtacatagatgc
tgaagaaagggaagaaactgagtataaatagttaatagaaaaatgttgcc
tggcggtggtggtgcacgcctttaatcccagcacttgggaggcagaggca
ggcagatttctgagttcgaggccagcctggtctacagagtgagttctagg
acagccaggctacacagagaaaccctgtcttgaaaaaccaaaaaataaaa
tattaatatttgaatataataagtaaagcttctgagtagaatgagcaata
tttaaaagaaatgtttcaaaatgggaaatgatatagcagaaggcacctgg
acctgtgtgagttcctttgagattacatgggtgctgggttacataaggtt
taccatccctccaagatccgatcagagaaggttatcttgtcttccttaat
tca
gaattcacatccatttatgctagtattattcgaattaagctctaaagaaa
ctatataaaagcatgtgtttggccagctcatgcctgatttaatacaatta
tgtaaaagtaataacctgtttatgtggccctgagtgctcaaaatagcttt
atcttttaatgtgctttttaataagtatttttagccatcataattagagt
gaaactttgagacgcatttgacataaaaagcctagattaaaacaaacaat
atgtttacaaagatgtactcagcatatacaagatatccctaatgcagatg
ctgaacagagagaatgcctctgccaccttgcctacagtgaaagagtaagg
aagagagtaacctcaaataaagtagtgggtaaaactggagaaatatcatt
tcttacttctttcagtaaaataaatttatgtcatttgttaaagaacttct
gcatgacattcgtctagcaaaagcttcctaatgagggaaaaaaacatcat
aaagaaattcttcatggctttgggggtgtgaggctaggcactttgccatt
ctgtcattgaggactgtgcagacagcagctgcattaatccttacagtgtc
caccagcactgagtactgtgatggtcacttcttagataggccaagtgtga
cttggagaatacatttgatgtccagtagtcacactgtcaaacctggactt
atgctctgggctagctgactcttttgcccatatttctctcatcagaacag
ggctgcttctgggctgttttgtaagcctgggttctataaagtatccacag
actttgcaaaaagcaatggcaaaggaaatagtagcaggccacatgagaaa
acctctgaatgttaatgcttacatttaacatttttacgtgctttcctaca
taaggcttccagatggaaatatttagttttactgttgaaaggactggttt
tcagagcttgtttactatatcatagttgagggcagctcgtgacagcctga
cagcagggagaggaccttacacaggagaggcagacgtgaggaagccactg
tgatgtgctatcatgaggattaccaaagcacactggaaatgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_33151200_33152373
seq2: B6Ng01-060A01.b_58_1210

seq1  TGGTGCTTGAGGTGAATTGGTCCGACTTCCAGAAGAGAAGGTTCCCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTGAGGTGAATTGGTCCGACTTCCAGAAGAGAAGGTTCCCCCCC  50

seq1  GCCCCCAGGAAAAGCCAGTGCAGTTACCTGACAGTGAGTAAACCCGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAGGAAAAGCCAGTGCAGTTACCTGACAGTGAGTAAACCCGGTGT  100

seq1  TTCTCGTGGTTTCGTCAGATCTACCATCGCCTGCCAGCCTGACCTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGTGGTTTCGTCAGATCTACCATCGCCTGCCAGCCTGACCTGCTTT  150

seq1  GACCCCGCAGACTGTCCCTGTCCCCTCTGAACAAAAGGATGGCTGTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCGCAGACTGTCCCTGTCCCCTCTGAACAAAAGGATGGCTGTTGCA  200

seq1  CAGCAGCCCTATGGTTTGGCACAGTTGTTGCAGGTACTTAAAATGGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCCTATGGTTTGGCACAGTTGTTGCAGGTACTTAAAATGGCTGC  250

seq1  CTGAACTTAAACTGGGAGGGTAGCCATTAGGAGATATTTCTTAGGAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTAAACTGGGAGGGTAGCCATTAGGAGATATTTCTTAGGAGTCT  300

seq1  TGTGATTTGGAGACTCCATTTGTTCTTCATTCCTCCCTAAATGGCCAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTGGAGACTCCATTTGTTCTTCATTCCTCCCTAAATGGCCAACC  350

seq1  ACCACGGACAAGGAATCACCTGCCACTCATGATCCCAGCACTCACAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGGACAAGGAATCACCTGCCACTCATGATCCCAGCACTCACAGAAC  400

seq1  AGGAGCAGGGCAGGGATGCCGGATGGAGCTAACTGGGCTACCGAGGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGGGCAGGGATGCCGGATGGAGCTAACTGGGCTACCGAGGGACA  450

seq1  CCTGGCGAAGCAGGTAATGGCCTTACACTATACAGATGATGCAGATGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCGAAGCAGGTAATGGCCTTACACTATACAGATGATGCAGATGTCT  500

seq1  CCATATCCTTACTACTGAACCACAAGTGATACCCTGAAAGCCCCTGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCTTACTACTGAACCACAAGTGATACCCTGAAAGCCCCTGGAAT  550

seq1  ATGCAGTGCACCAATGTAAGGTACAAGTTCCAGATTACACAAGCAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGCACCAATGTAAGGTACAAGTTCCAGATTACACAAGCAGAGAG  600

seq1  TAGTGGCATCGCACTGAATGCAAGAAACTGAAGTTCCAGGCCTTAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCATCGCACTGAATGCAAGAAACTGAAGTTCCAGGCCTTAGAATT  650

seq1  AGTAATGTATGCTTAAGAGTGTCCAGTCCTCAGGACAGATGTAGGAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTATGCTTAAGAGTGTCCAGTCCTCAGGACAGATGTAGGAAGTT  700

seq1  TGGAAGCAGTGAGATATAAGTAGAAGTGTTTTGTAAGTGTACATAGATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCAGTGAGATATAAGTAGAAGTGTTTTGTAAGTGTACATAGATGC  750

seq1  TGAAGAAAGGGAAGAAACTGAGTATAAATAGTTAATAGAAAAATGTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAGGGAAGAAACTGAGTATAAATAGTTAATAGAAAAATGTTGCC  800

seq1  TGGCGGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCA  850

seq1  GGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGG  900

seq1  ACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAAACCAAAAAAATA  950
      ||||||| ||||||||||||||||||||||||| |||||||||||||   
seq2  ACAGCCA-GGCTACACAGAGAAACCCTGTCTTG-AAAAACCAAAAAA--T  946

seq1  AAAATATTAATATTTGAATATAATAAAGTAAAGCCTCTGAAGTAAGAATG  1000
      |||||||||||||||||||||||| ||||||||| |||| ||| ||||||
seq2  AAAATATTAATATTTGAATATAAT-AAGTAAAGCTTCTG-AGT-AGAATG  993

seq1  AGCAATATTTAAAAAGAAAATGTTTCAAAAATGGAAAATGATATAGCAGA  1050
      ||||||||||||||   ||||||||| ||||||| |||||||||||||||
seq2  AGCAATATTTAAAA--GAAATGTTTC-AAAATGGGAAATGATATAGCAGA  1040

seq1  AGGCACCTGGACCCTGTGT-AGTTCCTTTTGAGTTACCATGGGGTGCGTG  1099
      ||||||||||| ||||||| |||||| |||||| |  ||| |||||| ||
seq2  AGGCACCTGGA-CCTGTGTGAGTTCC-TTTGAGATTACAT-GGGTGC-TG  1086

seq1  GGTTACAATAGGTTTAACAATCTCTCCAAGATCAGGATCAAGAAGAAGAG  1149
      |||||||  |||||| || ||| ||||||||||  |||||   |||||  
seq2  GGTTACATAAGGTTT-ACCATCCCTCCAAGATC-CGATCA--GAGAAGGT  1132

seq1  TAAATCTTGTCTTCTCTTAAATTCA  1174
      |  ||||||||||| ||| ||||||
seq2  T--ATCTTGTCTTC-CTT-AATTCA  1153

seq1: chr15_33261452_33262554
seq2: B6Ng01-060A01.g_65_1158 (reverse)

seq1  ATTCATTTCCAGTGTGCTTTGGTTATTCCTCATGATAGCAACATCACAGT  50
      |||||||||||||||||||||| || ||||||||||||| ||||||||||
seq2  ATTCATTTCCAGTGTGCTTTGG-TAATCCTCATGATAGC-ACATCACAGT  48

seq1  GGCTTCCCTCACGTCTTGCCTCTCCTGTGTAAGGTCCTCTCCCCTGCTGT  100
      ||||| ||||||||| |||||||||||||||||||||||| |||||||||
seq2  GGCTT-CCTCACGTC-TGCCTCTCCTGTGTAAGGTCCTCT-CCCTGCTGT  95

seq1  CAGGCTGTCACTGAGCTGCCTTCAACTATGATATAGTAAACAAGCTCCTG  150
      ||||||||||| |||||||| ||||||||||||||||||||||||| |||
seq2  CAGGCTGTCAC-GAGCTGCCCTCAACTATGATATAGTAAACAAGCT-CTG  143

seq1  AAAACCAGTCCTTTTCAACAGTAAAACTAAATATTTCCATCTTGGAAGCC  200
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  AAAACCAGTCC-TTTCAACAGTAAAACTAAATATTTCCATC-TGGAAGCC  191

seq1  TTATGTAGGAAAGCACGTAAAAATGTTAAATGTAAGCATTAACATTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGGAAAGCACGTAAAAATGTTAAATGTAAGCATTAACATTCAGA  241

seq1  GGTTTTCTCATGTGGCCTGCTACTATTTCCTTTGCCATTGCTTTTTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTCATGTGGCCTGCTACTATTTCCTTTGCCATTGCTTTTTGCAA  291

seq1  AGTCTGTGGATACTTTATAGAACCCAGGCTTACAAAACAGCCCAGAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGGATACTTTATAGAACCCAGGCTTACAAAACAGCCCAGAAGCA  341

seq1  GCCCTGTTCTGATGAGAGAAATATGGGCAAAAGAGTCAGCTAGCCCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTCTGATGAGAGAAATATGGGCAAAAGAGTCAGCTAGCCCAGAG  391

seq1  CATAAGTCCAGGTTTGACAGTGTGACTACTGGACATCAAATGTATTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTCCAGGTTTGACAGTGTGACTACTGGACATCAAATGTATTCTCC  441

seq1  AAGTCACACTTGGCCTATCTAAGAAGTGACCATCACAGTACTCAGTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACACTTGGCCTATCTAAGAAGTGACCATCACAGTACTCAGTGCTG  491

seq1  GTGGACACTGTAAGGATTAATGCAGCTGCTGTCTGCACAGTCCTCAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACACTGTAAGGATTAATGCAGCTGCTGTCTGCACAGTCCTCAATGA  541

seq1  CAGAATGGCAAAGTGCCTAGCCTCACACCCCCAAAGCCATGAAGAATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGCAAAGTGCCTAGCCTCACACCCCCAAAGCCATGAAGAATTTC  591

seq1  TTTATGATGTTTTTTTCCCTCATTAGGAAGCTTTTGCTAGACGAATGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATGTTTTTTTCCCTCATTAGGAAGCTTTTGCTAGACGAATGTCA  641

seq1  TGCAGAAGTTCTTTAACAAATGACATAAATTTATTTTACTGAAAGAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGTTCTTTAACAAATGACATAAATTTATTTTACTGAAAGAAGTA  691

seq1  AGAAATGATATTTCTCCAGTTTTACCCACTACTTTATTTGAGGTTACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGATATTTCTCCAGTTTTACCCACTACTTTATTTGAGGTTACTCT  741

seq1  CTTCCTTACTCTTTCACTGTAGGCAAGGTGGCAGAGGCATTCTCTCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTACTCTTTCACTGTAGGCAAGGTGGCAGAGGCATTCTCTCTGTT  791

seq1  CAGCATCTGCATTAGGGATATCTTGTATATGCTGAGTACATCTTTGTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTGCATTAGGGATATCTTGTATATGCTGAGTACATCTTTGTAAA  841

seq1  CATATTGTTTGTTTTAATCTAGGCTTTTTATGTCAAATGCGTCTCAAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTTTGTTTTAATCTAGGCTTTTTATGTCAAATGCGTCTCAAAGT  891

seq1  TTCACTCTAATTATGATGGCTAAAAATACTTATTAAAAAGCACATTAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTAATTATGATGGCTAAAAATACTTATTAAAAAGCACATTAAAA  941

seq1  GATAAAGCTATTTTGAGCACTCAGGGCCACATAAACAGGTTATTACTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGCTATTTTGAGCACTCAGGGCCACATAAACAGGTTATTACTTTT  991

seq1  ACATAATTGTATTAAATCAGGCATGAGCTGGCCAAACACATGCTTTTATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTGTATTAAATCAGGCATGAGCTGGCCAAACACATGCTTTTATA  1041

seq1  TAGTTTCTTTAGAGCTTAATTCGAATAATACTAGCATAAATGGATGTGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTTTAGAGCTTAATTCGAATAATACTAGCATAAATGGATGTGAA  1091

seq1  TTC  1103
      |||
seq2  TTC  1094