BAC Information

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BAC

Clone NameB6Ng01-060C05
Chromosome15 (Build37)
Map Location 41,018,011 - 41,144,890
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670013, LOC664872, Zfpm2, Ppia-ps25
Downstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060C05.bB6Ng01-060C05.g
ACCDH881204DH881205
length1,089751
definitionDH881204|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C05, 5' end.DH881205|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,018,011 - 41,018,724)(41,144,140 - 41,144,890)
sequence
gaattcttcaagaagattacccactgcaatcaagtattcttcaccatgga
gatgcaaggatggttcactatgtgaaaatcagtaaatacaatccaccaca
taaacaaaatgacaggaacaaaaaccccacatgatcatcaggacaaatta
agactataaggtacatatctaagcataataaagtcaaagtacagcaagtc
tatagccaacatcaaattaaacagagagaatctcaaagctactccactga
aatcagaaaggagtcaaaattggccactatatagtacttaaagactttgc
tagagtaataagataatttatacagagctaagcatattcctgtgttctgg
gtcagcctgggacacagcatttctaggcccaggtgtggtagaaatggtta
tttcaggacagggtcctacccagctagtttactgtctattcttagcagag
gcaggtatatctctgaaattttttgcaatgttaaaagaaaacgtgtggtt
gctgtcacctaagaattaaggggctggggtcacaggatgctgattcatag
gataatcaaaagggaacctggagtaaatgactggattgatgtgtaaaata
aaagactggccttatgatctgcatgagatgagctatccagagaacttttt
agaatagcaagaatgaactgcttggagaactatctcaagcagaacataga
gagaaagctgtctgtagatctctagagaaagcagatcagagagaaagaaa
gcataacagagagaaagcagactggaaagctgtcttgagcagattatagg
ctccccacttggacttatgatttgactttgagtcatttgttttcacagat
cccagacatccctttctcagaacccctctccatccttccatcacacgata
gccaatccctccctttgtactttgtactaacttcattttgctcagatatc
acaagagagtgttttcctgattatcattatgaattcatgctcttataatt
gttctcctgtgctatcatctcacatcaccatcctcacgactggcagctgt
cattcagactttcacgcccacacccaccactgtcagcaa
gaattcatttattcacagcagatatttaatgctggctgttgttggatctc
ttagtgaatttttctaatagcttatagttatagagggtacaggctttctc
tcaaaacaaaccagtgcatgttccaagatggaggtaactaagcatgacct
ttccttcaaatgtataaggcaaacctaaataaaacaacgaccagtttgtg
tcaaagctaataagaaatgagaggcagttaactatttgtctcttttctag
acttcatgagcctgctcattgatatctaatgaatattctgtttggagact
ttcagtggtgtgtggcacttggtcagtttgatgtgactccagtccctcat
tcaaaaaagaataatcaattacaatggggaaatgcatgcaaatcttcacc
tttcactcctcttttccttcccttctctcttcctcacctcaaagaaaaac
ggagaagttacctgcttgccactggataaattttaatatgtttgacttaa
agttctaattattttgatgtagcatttctgtggtaagtcagcttattaaa
cctcttaaagaatgaaaattattttataccagtcaaacatttaaaaataa
tcatatgtagtatgaagttgcaaaggtgttaatacccatatttacattta
ttctgttttatgtgatgttaataagcatggtaatatttattctctctctc
tccctctctctctctctctttctctctctctctctctctctctctccctc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_41018011_41018724
seq2: B6Ng01-060C05.b_435_1137

seq1  GGTAGAAATGGTTATTTCAGGACAGGGTCCTACCCAGCTAGTTTACTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAATGGTTATTTCAGGACAGGGTCCTACCCAGCTAGTTTACTGTC  50

seq1  TATTCTTAGCAGAGGCAGGTATATCTCTGAAATTTTTTGCAATGTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAGCAGAGGCAGGTATATCTCTGAAATTTTTTGCAATGTTAAAA  100

seq1  GAAAACGTGTGGTTGCTGTCACCTAAGAATTAAGGGGCTGGGGTCACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGTGTGGTTGCTGTCACCTAAGAATTAAGGGGCTGGGGTCACAGG  150

seq1  ATGCTGATTCATAGGATAATCAAAAGGGAACCTGGAGTAAATGACTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATTCATAGGATAATCAAAAGGGAACCTGGAGTAAATGACTGGAT  200

seq1  TGATGTGTAAAATAAAAGACTGGCCTTATGATCTGCATGAGATGAGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGTAAAATAAAAGACTGGCCTTATGATCTGCATGAGATGAGCTAT  250

seq1  CCAGAGAACTTTTTAGAATAGCAAGAATGAACTGCTTGGAGAACTATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAACTTTTTAGAATAGCAAGAATGAACTGCTTGGAGAACTATCTC  300

seq1  AAGCAGAACATAGAGAGAAAGCTGTCTGTAGATCTCTAGAGAAAGCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAACATAGAGAGAAAGCTGTCTGTAGATCTCTAGAGAAAGCAGAT  350

seq1  CAGAGAGAAAGAAAGCATAACAGAGAGAAAGCAGACTGGAAAGCTGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAAGAAAGCATAACAGAGAGAAAGCAGACTGGAAAGCTGTCTT  400

seq1  GAGCAGATTATAGGCTCCCCACTTGGACTTATGATTTGACTTTGAGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATTATAGGCTCCCCACTTGGACTTATGATTTGACTTTGAGTCAT  450

seq1  TTGTTTTCACAGATCCCAGACATCCCTTTCTCAGAACCCCTCTCCATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCACAGATCCCAGACATCCCTTTCTCAGAACCCCTCTCCATCCT  500

seq1  TCCATCACACGATAGCCAATCCCTCCCTTTGTACTTTGTACTAACTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACACGATAGCCAATCCCTCCCTTTGTACTTTGTACTAACTTCAT  550

seq1  TTTGCTCAGATATTCACAAGAGAGTGTTTTCCTGATTATCATTATGAATT  600
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCAGATA-TCACAAGAGAGTGTTTTCCTGATTATCATTATGAATT  599

seq1  CATGCTCTTATTAATTGTTCTCCTGTGCTTATTCATCTTCACATCACCCA  650
      |||||||||| ||||||||||||||||||   ||||| |||||||| |||
seq2  CATGCTCTTA-TAATTGTTCTCCTGTGCT--ATCATC-TCACATCA-CCA  644

seq1  TCCTCACGACTGGCAGCTGTTCATTCAGACTTTCCACGCCCCACCACCCA  700
      ||||||||||||||||||| ||||||||||||| |||||||   ||||||
seq2  TCCTCACGACTGGCAGCTG-TCATTCAGACTTT-CACGCCC--ACACCCA  690

seq1  CCACTGTCCAGCAA  714
      ||||||| ||||||
seq2  CCACTGT-CAGCAA  703

seq1: chr15_41144140_41144890
seq2: B6Ng01-060C05.g_71_821 (reverse)

seq1  AGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGGG  50

seq1  AGAGAGAGAGAATAAATATTACCATGCTTATTAACATCACATAAAACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAATAAATATTACCATGCTTATTAACATCACATAAAACAGA  100

seq1  ATAAATGTAAATATGGGTATTAACACCTTTGCAACTTCATACTACATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTAAATATGGGTATTAACACCTTTGCAACTTCATACTACATATG  150

seq1  ATTATTTTTAAATGTTTGACTGGTATAAAATAATTTTCATTCTTTAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTAAATGTTTGACTGGTATAAAATAATTTTCATTCTTTAAGAG  200

seq1  GTTTAATAAGCTGACTTACCACAGAAATGCTACATCAAAATAATTAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAAGCTGACTTACCACAGAAATGCTACATCAAAATAATTAGAAC  250

seq1  TTTAAGTCAAACATATTAAAATTTATCCAGTGGCAAGCAGGTAACTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCAAACATATTAAAATTTATCCAGTGGCAAGCAGGTAACTTCTC  300

seq1  CGTTTTTCTTTGAGGTGAGGAAGAGAGAAGGGAAGGAAAAGAGGAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTCTTTGAGGTGAGGAAGAGAGAAGGGAAGGAAAAGAGGAGTGAA  350

seq1  AGGTGAAGATTTGCATGCATTTCCCCATTGTAATTGATTATTCTTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAGATTTGCATGCATTTCCCCATTGTAATTGATTATTCTTTTTTG  400

seq1  AATGAGGGACTGGAGTCACATCAAACTGACCAAGTGCCACACACCACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGACTGGAGTCACATCAAACTGACCAAGTGCCACACACCACTGA  450

seq1  AAGTCTCCAAACAGAATATTCATTAGATATCAATGAGCAGGCTCATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCAAACAGAATATTCATTAGATATCAATGAGCAGGCTCATGAAG  500

seq1  TCTAGAAAAGAGACAAATAGTTAACTGCCTCTCATTTCTTATTAGCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAAGAGACAAATAGTTAACTGCCTCTCATTTCTTATTAGCTTTG  550

seq1  ACACAAACTGGTCGTTGTTTTATTTAGGTTTGCCTTATACATTTGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACTGGTCGTTGTTTTATTTAGGTTTGCCTTATACATTTGAAGGA  600

seq1  AAGGTCATGCTTAGTTACCTCCATCTTGGAACATGCACTGGTTTGTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATGCTTAGTTACCTCCATCTTGGAACATGCACTGGTTTGTTTTG  650

seq1  AGAGAAAGCCTGTACCCTCTATAACTATAAGCTATTAGAAAAATTCACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCCTGTACCCTCTATAACTATAAGCTATTAGAAAAATTCACTA  700

seq1  AGAGATCCAACAACAGCCAGCATTAAATATCTGCTGTGAATAAATGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCAACAACAGCCAGCATTAAATATCTGCTGTGAATAAATGAATT  750

seq1  C  751
      |
seq2  C  751