BAC Information

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BAC

Clone NameB6Ng01-061D05
Chromosome15 (Build37)13 (Build37)
Map Location 84,865,388 - 84,866,54294,427,157 - 94,427,698
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4931407K02Rik, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a
Downstream gene3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061D05.bB6Ng01-061D05.g
ACCDH881945DH881946
length1,136289
definitionDH881945|Mus musculus domesticus DNA, BAC clone: B6Ng01-061D05, 5' end.DH881946|Mus musculus domesticus DNA, BAC clone: B6Ng01-061D05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,865,388 - 84,866,542)(94,427,157 - 94,427,698)
sequence
gaattcctcgggtctttgcctctcatctcactgtggatgtgccaccatgc
ctgacttttaggtgggctctggggattcaaactcaggtcttcatgactgc
atggcaaatgctttacccacaaggagacatctccccattcctgactctgt
tttctgaatctgtgggggaaaaaagtcacaatccttactgcacagggttg
ctgtgagagtgaaggaagaggtgtcacagggaagtttagcacatagtttg
tgctttgtaatcattactctcgcagacttccacaggcacttgcatttcaa
acagactgacatctcctggggtagccactgctgcttgcctccaaggccac
ctttggtataacaaagaaaggaatctggtctgttgaactcatgccatgaa
acatattttgtgcacacacctattcatgaatttgttcagcctacctgaat
gacgcactgcaggaacacactggcgggcgctacattatctactcagaatg
aacacagtggacagggattaaagcagttttctgagactccctgtaaatca
gggtgatcctagtactgccaggctgggtagaaagtgttcatctgtctctc
ttggatacagaggagggcattgtttctaaggtgtcccttttgtcccttct
gtgggtttgcccttgtaaagctgcttggctgaatgggcagagacttccga
tctgtgttgaccttagatggagagttgggattactgaggctctgccacac
tggatcttggagggcatccagtgtgtgggtggtgtgctgtgggttctaac
tcctcagctcctagcctacagtctccttgaacaacttccttcctgtaacc
cgggaacttctccagtgtcacaggttcaagtcttaggaccctttatggaa
gcaggagcttgtgaactaaattgcatcacatgtaattgttcagtctagta
gtgggaagcccagacctttgaagccaatgcatggttggtattgccaatac
aacttctctgggcttctcctctctgctgtaattgcagtaaatggggtgca
tcctcatgggagatgtctgagactgaaaaacatttctcaaaggcagctct
agtagtaccggactcgggttcaaaccctgttcgggc
atattcatattctctcttctctctctctctctctctctctctctctctct
ctctctgctctctgtgtgtgtgtgtgtgtgtgcccacaaactctctgaga
gtgatctctttcttttctatgaaaaatatatatatatacctaccccccca
cagcgtgggtgggggggcgggaaaaaacactctctaagagagatgtgcgc
cgcctcatttttttttttgtttttttatataaaaacagccacagacctag
gggagaaacacacagaaacgcgggtttttgctctgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_84865388_84866542
seq2: B6Ng01-061D05.b_47_1182

seq1  GAATTCCTCGGGTCTTTGCCTCTCATCTCACTGTGGATGTGCCACCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGGGTCTTTGCCTCTCATCTCACTGTGGATGTGCCACCATGC  50

seq1  CTGACTTTTAGGTGGGCTCTGGGGATTCAAACTCAGGTCTTCATGACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTTAGGTGGGCTCTGGGGATTCAAACTCAGGTCTTCATGACTGC  100

seq1  ATGGCAAATGCTTTACCCACAAGGAGACATCTCCCCATTCCTGACTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAATGCTTTACCCACAAGGAGACATCTCCCCATTCCTGACTCTGT  150

seq1  TTTCTGAATCTGTGGGGGAAAAAAGTCACAATCCTTACTGCACAGGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAATCTGTGGGGGAAAAAAGTCACAATCCTTACTGCACAGGGTTG  200

seq1  CTGTGAGAGTGAAGGAAGAGGTGTCACAGGGAAGTTTAGCACATAGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGAGTGAAGGAAGAGGTGTCACAGGGAAGTTTAGCACATAGTTTG  250

seq1  TGCTTTGTAATCATTACTCTCGCAGACTTCCACAGGCACTTGCATTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTAATCATTACTCTCGCAGACTTCCACAGGCACTTGCATTTCAA  300

seq1  ACAGACTGACATCTCCTGGGGTAGCCACTGCTGCTTGCCTCCAAGGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGACATCTCCTGGGGTAGCCACTGCTGCTTGCCTCCAAGGCCAC  350

seq1  CTTTGGTATAACAAAGAAAGGAATCTGGTCTGTTGAACTCATGCCATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTATAACAAAGAAAGGAATCTGGTCTGTTGAACTCATGCCATGAA  400

seq1  ACATATTTTGTGCACACACCTATTCATGAATTTGTTCAGCCTACCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTGTGCACACACCTATTCATGAATTTGTTCAGCCTACCTGAAT  450

seq1  GACGCACTGCAGGAACACACTGGCGGGCGCTACATTATCTACTCAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCACTGCAGGAACACACTGGCGGGCGCTACATTATCTACTCAGAATG  500

seq1  AACACAGTGGACAGGGATTAAAGCAGTTTTCTGAGACTCCCTGTAAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTGGACAGGGATTAAAGCAGTTTTCTGAGACTCCCTGTAAATCA  550

seq1  GGGTGATCCTAGTACTGCCAGGCTGGGTAGAAAGTGTTCATCTGTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATCCTAGTACTGCCAGGCTGGGTAGAAAGTGTTCATCTGTCTCTC  600

seq1  TTGGATACAGAGGAGGGCATTGTTTCTAAGGTGTCCCTTTTGTCCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATACAGAGGAGGGCATTGTTTCTAAGGTGTCCCTTTTGTCCCTTCT  650

seq1  GTGGGTTTGCCCTTGTAAAGCTGCTTGGCTGAATGGGCAGAGACTTCCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTGCCCTTGTAAAGCTGCTTGGCTGAATGGGCAGAGACTTCCGA  700

seq1  TCTGTGTTGACCTTAGATGGAGAGTTGGGATTACTGAGGCTCTGCCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTGACCTTAGATGGAGAGTTGGGATTACTGAGGCTCTGCCACAC  750

seq1  TGGATCTTGGAGGGCATCCAGTGTGTGGGTGGTGTGCTGTGGGTTCTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTGGAGGGCATCCAGTGTGTGGGTGGTGTGCTGTGGGTTCTAAC  800

seq1  TCCTCAGCTCCTAGCCTACAGTCTCCTTGAACAACTTCCTTCCTGTAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCTCCTAGCCTACAGTCTCCTTGAACAACTTCCTTCCTGTAACC  850

seq1  CGGGAACTTCTCCAGTGTCACAGGTTCAAGTCTTAGGACCCTTTATGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAACTTCTCCAGTGTCACAGGTTCAAGTCTTAGGACCCTTTATGGAA  900

seq1  GCAGGAGCTTGTGAACTAAATTGCATCACATGTAAATTGTTCAGTCTAGT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAGGAGCTTGTGAACTAAATTGCATCACATGT-AATTGTTCAGTCTAGT  949

seq1  AGTGGGAAGCCCAGACCTTTGAAGCCAATGCATGGTTGGTATTGCCAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGCCCAGACCTTTGAAGCCAATGCATGGTTGGTATTGCCAATA  999

seq1  CAACTTCTCTGGGCTTCCTCCTCTCCTGCTGTTAATTGCAGTAAATGGGG  1050
      |||||||||||||||| ||||||| |||||| ||||||||||||||||||
seq2  CAACTTCTCTGGGCTT-CTCCTCT-CTGCTG-TAATTGCAGTAAATGGGG  1046

seq1  TGCCATCCTCATGGGAGATGTCCTGAGGACTGAAAAAAACATTTTCTCAA  1100
      || |||||||||||||||||| |||| |||||||||| |   ||||||||
seq2  TG-CATCCTCATGGGAGATGT-CTGA-GACTGAAAAACA---TTTCTCAA  1090

seq1  AGGCCAGCTACTTAGTAGGTACCCAGACTCAGGTGTTCAAACCACTGTTC  1150
      ||| |||||   ||||| ||| || |||||  | ||||||||| ||||||
seq2  AGG-CAGCT--CTAGTA-GTA-CCGGACTC--GGGTTCAAACC-CTGTTC  1132

seq1  TGGGC  1155
       ||||
seq2  -GGGC  1136

seq1: chr13_94427157_94427698
seq2: B6Ng01-061D05.g_83_361

seq1  TCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-C  49
      ||||||| ||||| |||||||||||||||||||||||||||||||||| |
seq2  TCTCTCT-TCTCT-CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGC  48

seq1  TCTCTGTGTGTGTGTGTGTAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  99
      ||||||||||||||||||                                
seq2  TCTCTGTGTGTGTGTGTG--------------------------------  66

seq1  AAGGAAGGGAGGAAGGAAGGGAGAGATATCAGACTAAGGTAGAACTTTTG  149
                                                    | ||
seq2  ----------------------------------------------TGTG  70

seq1  TTTCAACATACAGCCAGAAGAACTGTGCATATTTCAGCCAGAAGCTTTTT  199
      |  | ||| ||   | | |||   |||               | || |||
seq2  TGCCCACAAACTCTCTG-AGA---GTG---------------ATCTCTTT  101

seq1  CACAATTGTGCATGTGATATGTATGTGTACATATATGTATATATGTTCAT  249
      |           | |  |||| |     | |||||| ||||||  | |  
seq2  C-----------TTTTCTATGAA-----AAATATATATATATACCTACCC  135

seq1  GAGCATA-TGTGTGTATGTGTATATGCATGTACTCACACTCAGAGGCCAG  298
         || |  ||| ||  | |     | |   || | | || ||||   ||
seq2  CCCCACAGCGTGGGTGGGGGGGCGGGAAAAAACACTCTCTAAGAG---AG  182

seq1  CTGTCTTCCACAGCTGTTTTGCACCTTATTTTTTGAGATCTTTTATAAAA  348
       |||   || |  |  ||||        |||||||   | || |||||||
seq2  ATGTGCGCCGCCTCATTTTT--------TTTTTTGTTTTTTTATATAAAA  224

seq1  TGCACATGAATTTAGCTGGCCAGTGGTGCTGGTTTCCCT--GGCACCAAA  396
         |||            ||||  |           |||  || |  || 
seq2  ---ACA------------GCCACAG----------ACCTAGGGGAGAAAC  249

seq1  AC-CAAGACTGCAGATGTGTGCTTGGCTTTTTATCTGGGTTCTGGGGATC  445
      || ||  |  || | | | ||||   || | ||                 
seq2  ACACAGAAACGCGGGTTTTTGCT---CTGTATA-----------------  279

seq1  TGAACTCAGGCCTTCAGTACTTTCTTTTTTTTTTTTTTTTTTTTTTTTTT  495
                                                        
seq2  --------------------------------------------------  279

seq1  TTTTTTTTTTTTTTGGTTTTTTTTTCGAGACAGGGTTTCTCTGTATA  542
                                                     
seq2  -----------------------------------------------  279