BAC Information

Click to search

BAC

Clone NameB6Ng01-062L08
Chromosome15 (Build37)
Map Location 16,505,656 - 16,506,697
singlet/doubletsinglet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062L08.bB6Ng01-062L08.g
ACCDH883019DH883020
length1,2721,070
definitionDH883019|Mus musculus domesticus DNA, BAC clone: B6Ng01-062L08, 5' end.DH883020|Mus musculus domesticus DNA, BAC clone: B6Ng01-062L08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatagtgcgtcctgcagctcaaccctgagaaaagctaatgctct
ctgctcagtagacattaggtacaaatcacactttatctaggggtgtgata
aaatttctccatgttcattggcatgtcaaagagtgtcattgtctgggact
tatttaggcaaaaatatttttgagatttcaaattagacagctgtgagtta
ccccccaatataaaagtaccactggggatatcttaggatactggcgactg
ttgtaggttctaagctttgcagtaatcactatgtaattgaaatgtttaga
atagcacccaaatatgagaggctaccataccttatcaccatttctgatcc
ctcacctttccctatctacctagttccttctctccatcaccctccactga
ctacttagtctctcattctgagttagagtcaggtgtcctcccttgagagc
tttttatacctggattttgaggggaggctgtggattgtagcatggttgtc
ttacactgtccagttaatgtccacttataagtgaatacataccatacatg
tctttctggctccagtttacctgactcagaatgatattctcaagttcaat
ccatttgcctacaaaatgcatgtctttgtttttaatagctgaattgcact
ccattgtatagatgtactacatgatctttattcattcttcagttgaggga
aatatagattgtttccagcttctagccattttaaataatgctgctatgta
catagttgagcatgtgtccctatagtaaagtggagcatcattttgggaat
tgtatagctgggtcttgatgtagaactatttccagtttttcaagaaacca
tcaatttgatttccaaagtacaagtgtacactcgcacgagccatgggaac
agtgtcccctttgcttcacatctccctcagcatgtgttatcacttgagtt
ttgatctaaccattctgactgtgtagacagaatcttaggttgtttaattt
gcatttcctgatgaatagggacatcaaagatttctttagtgattctcgcc
atttgaattctctatgaggatcctttgtttacctttgttactttctgtcg
atgtatgatgggtgaagacattttctcaaatttaggctgctattgtccta
ttgacagtggattgcgtttacaagactgtttgaagccggcatcatttact
ctactagcatggttggtctgaatatgtccatcacagtttctggcataaca
ctatccttctataagtatcttc
gaattccctttaagttcctttcccgcttaatctgctcgatgctgttactg
ttgtagtagatattggaagggggcctacctactcttgatgatcctagtgt
gtcaggcctctgatggatattattgggctgtatggttctggattggcagg
tctgaagaaggtgggctgattggtgttgggacaatggaggtccagcaaag
atagccaacatcccttgtgcttttctttcactaatctagacatttttatt
caacttcttaattatcagtatttacttgaaactgagtcacactatttagt
cctatgaacgttgcctgagttaacatgataagaaaaatgagatataataa
atcaaattgtaaacataattgaaatgatttggcatgccactcattgcctg
acataatacaatcaatttacaccaaaattaacaaccctctgggtatgact
aaatatcaaaagcattaagagaattcatacatttaagacatttttagaaa
ttgattttgtatacccaatgattcctatcacttacatattttttcacatt
taaatattatttcccgaatctttactttgagttgcagtgttttccacatt
tatagagtataaattaaaattgccacttatcttttgtattatttgtttca
tacaactttatatctatgaaaggaacgcatctttaaattttaaatggttt
cctttaaaagagaatgatgaagttgaccctcttttaaataaggtaatcgg
aaagagtatagttgcatactcaaaaaccagagaggcagctaccaaaacca
ataaaaataaatatactgtctgcataacagcatacttttcatgaaggcca
attgttgtacagttaaaacactgaattctaaaggagtaccaaagaggtca
catggcagtcatttgcatttatggcatacagaaataaaattttagtattg
aaataatcacctctcttaactgcctctaagtgacaattccttatcattta
gtagccatcagaatgaaattaaggtccatgctactgatcagacgagaaaa
ttagctttaattaatttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16505656_16506697
seq2: B6Ng01-062L08.g_108_1135

seq1  TGTTCCTGTTGTAGTAGATATTGGAAGGGGGCCTACCTACTCTTGATGAT  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGTTGTAGTAGATATTGGAAGGGGGCCTACCTACTCTTGATGAT  50

seq1  CCTAGTGTGTCAGGCCTCTGATGGATATTATTGGGCTGTATGGTTCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGTGTCAGGCCTCTGATGGATATTATTGGGCTGTATGGTTCTGGA  100

seq1  TTGGCAGGTCTGAAGAAGGTGGGCTGATTGGTGTTGGGACAATGGAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGGTCTGAAGAAGGTGGGCTGATTGGTGTTGGGACAATGGAGGTC  150

seq1  CAGCAAAGATAGCCAACATCCCTTGTGCTTTTCTTTCACTAATCTAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGATAGCCAACATCCCTTGTGCTTTTCTTTCACTAATCTAGACA  200

seq1  TTTTTATTCAACTTCTTAATTATCAGTATTTACTTGAAACTGAGTCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCAACTTCTTAATTATCAGTATTTACTTGAAACTGAGTCACAC  250

seq1  TATTTAGTCCTATGAACGTTGCCTGAGTTAACATGATAAGAAAAATGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTCCTATGAACGTTGCCTGAGTTAACATGATAAGAAAAATGAGA  300

seq1  TATAATAAATCAAATTGTAAACATAATTGAAATGATTTGGCATGCCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAATCAAATTGTAAACATAATTGAAATGATTTGGCATGCCACTC  350

seq1  ATTGCCTGACATAATACAATCAATTTACACCAAAATTAACAACCCTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTGACATAATACAATCAATTTACACCAAAATTAACAACCCTCTGG  400

seq1  GTATGACTAAATATCAAAAGCATTAAGAGAATTCATACATTTAAGACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACTAAATATCAAAAGCATTAAGAGAATTCATACATTTAAGACATT  450

seq1  TTTAGAAATTGATTTTGTATACCCAATGATTCCTATCACTTACATATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAATTGATTTTGTATACCCAATGATTCCTATCACTTACATATTTT  500

seq1  TTCACATTTAAATATTATTTCCCGAATCTTTACTTTGAGTTGCAGTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTTAAATATTATTTCCCGAATCTTTACTTTGAGTTGCAGTGTTT  550

seq1  TCCACATTTATAGAGTATAAATTAAAATTGCCACTTATCTTTTGTATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTTATAGAGTATAAATTAAAATTGCCACTTATCTTTTGTATTAT  600

seq1  TTGTTTCATACAACTTTATATCTATGAAAGGAACGCATCTTTAAATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATACAACTTTATATCTATGAAAGGAACGCATCTTTAAATTTTA  650

seq1  AATGGTTTCCTTTAAAAGAGAATGATGAAGTTGA-CCTC-TTTAAATAAG  698
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  AATGGTTTCCTTTAAAAGAGAATGATGAAGTTGACCCTCTTTTAAATAAG  700

seq1  GTAATCGGAAAGAGTATAGTTGCATACTCAAAAACCAGAGAGGCAGCTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCGGAAAGAGTATAGTTGCATACTCAAAAACCAGAGAGGCAGCTAC  750

seq1  CAGAACCAAATAAAAATAAATATACTGTCTGCATAACAGGCATACTTTTC  798
      || |||| |||||||||||||||||||||||||||||| |||||||||||
seq2  CAAAACC-AATAAAAATAAATATACTGTCTGCATAACA-GCATACTTTTC  798

seq1  AATGAAGGCCAAATTGTTGTACAGTTAAAACACTGAATTCTAAAGGAGTA  848
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -ATGAAGGCC-AATTGTTGTACAGTTAAAACACTGAATTCTAAAGGAGTA  846

seq1  CCAAAGAGGTCACATTGCAAGTCATTTTGCATTTATGGCATACAGAAATA  898
      ||||||||||||||| || ||||| |||||||||||||||||||||||||
seq2  CCAAAGAGGTCACATGGC-AGTCA-TTTGCATTTATGGCATACAGAAATA  894

seq1  AAATTTTAGTATTTGGAATATATCACCTCTCTTTAACTGCCCTCTAAGTG  948
      ||||||||||| ||| |||| |||||||||| ||||||| ||||||||||
seq2  AAATTTTAGTA-TTGAAATA-ATCACCTCTC-TTAACTG-CCTCTAAGTG  940

seq1  ACAATCCTTTCATCATTTTAAGTAGGCATTCAGTATGAAATATAAAAGTT  998
      ||||| | || |||||||  ||||| || |||| |||||||    ||| |
seq2  ACAATTCCTT-ATCATTT--AGTAGCCA-TCAGAATGAAAT---TAAGGT  983

seq1  CACATGCTACTGATCAAGACAGAGAAAATTAGCTTTTATTTATT----  1042
      | ||||||||||||| |||| ||||||||||||||| ||| |||    
seq2  C-CATGCTACTGATC-AGAC-GAGAAAATTAGCTTTAATTAATTTATT  1028