BAC Information

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BAC

Clone NameB6Ng01-064C11
Chromosome15 (Build37)
Map Location 56,524,467 - 56,649,443
singlet/doubletdoublet
Overlap geneHas2, EG594843, LOC435442
Upstream geneSntb1, LOC665348, LOC100039908, Hba-ps3
Downstream geneLOC100040067, LOC100039984, BC026439, Zhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064C11.bB6Ng01-064C11.g
ACCDH884027DH884028
length6701,095
definitionDH884027|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C11, 5' end.DH884028|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,524,467 - 56,525,136)(56,648,336 - 56,649,443)
sequence
gaattcagtccaaggtgttgattatcccgtgtctggctctcttcccacct
cttcccaggctcccagggcccctcgaccccacatcggacaaggggctaga
gacagagtcccctaatcccccacacaacagcgtctccagctgcaacggag
gaaagaagcgccagcgtgctccgtgccacgtcggatttggctcgggactt
ggtgcagctgcgggagcgcagcgctgtccgcgcgcacgccctgcccaagg
ggtgcgggccggccggccagcgcaaggagggatgcgcgctctcttctctc
ccccagcggcgaatgcctgcgtgagggaccccttgccccaggaaaggctt
tctcggggtggctgtgcccggatgctcgctgcctgacactttaatggagt
ttggaaactgcaaaggagtggaggcccgggaaaaggggggagtggctgaa
ccaggatggtagcgcgaggaggtggcgcaggactttccttggggtctctt
ccagcctaacgtagctggaaacccggatcgtttaaccctttcagtctaag
ccaaaattgagcggttttgtttgtacccccacctccacccccgcacagaa
ctgtgccagggtgtccagcccacatactggtgggaggtgagggagaaaga
agggaagggtaggaaggtaa
gaattccagtgtccactgaagtacgggtataaaatggcacctttaagatt
gtgaaggatgtattaaattttggtttgcaaacaaatctttgctattcaca
attttaaaacagtaaagtacagaattttctgggttttagactcatccatt
cagtctagcttggcagagaatgctgatggagcagttaagtgattttgcaa
agtcatatattagtggttgacttaacttgcagacttctttgcatagtcct
attacagtcatcgtaattacagtaattggattaattagctcactccatgt
aaagctcctggggtccataagctttagaatgaataagcacagcctggcat
gtagcctagtttagtaagtgaaagagaaaaagagaaagagggttggggga
ggggatagaacacacagatgccgacgaaggccagcactatagtaaataat
catgtgtctcattagtaattatttaattttttgtgatgtatttactctgt
gtgttttgtctgcctgtctgcatgagcaccacatgtcttcctgatgaaga
cagaagtcagagggcacctggaactagaattacaagattatgatctatca
tgaaggggctaaggatcaaatacatctcttctaaaaaaatcaacaagtgt
tcttaatagatgagcccctatttataatatatttatgaaattaatatctg
gattgaactctagatatcaatggacagtgctaaaactaacacttcatttt
caaacctatttatactccggaagacattagtctttgggaacttctctggc
cagattggaggaaggggaagaagaaagggattcatacatgttcaagcctt
ctttctcaacttcttcagtgatttatcaagctattgaagctcatgtttat
tctgctgtgctgtcacttgcactgaccactcctaagcattgccatgatgt
ttcttacaacggtttcacaggtctcatccagtccatggaatctgcacagg
gcagctaaatagaaatcacatactaatcaccttagcttgataccttgaac
caaacctaaccctaccttctttgatgcttaacctttatctgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_56524467_56525136
seq2: B6Ng01-064C11.b_42_711

seq1  GAATTCAGTCCAAGGTGTTGATTATCCCGTGTCTGGCTCTCTTCCCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCAAGGTGTTGATTATCCCGTGTCTGGCTCTCTTCCCACCT  50

seq1  CTTCCCAGGCTCCCAGGGCCCCTCGACCCCACATCGGACAAGGGGCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGGCTCCCAGGGCCCCTCGACCCCACATCGGACAAGGGGCTAGA  100

seq1  GACAGAGTCCCCTAATCCCCCACACAACAGCGTCTCCAGCTGCAACGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGTCCCCTAATCCCCCACACAACAGCGTCTCCAGCTGCAACGGAG  150

seq1  GAAAGAAGCGCCAGCGTGCTCCGTGCCACGTCGGATTTGGCTCGGGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGCGCCAGCGTGCTCCGTGCCACGTCGGATTTGGCTCGGGACTT  200

seq1  GGTGCAGCTGCGGGAGCGCAGCGCTGTCCGCGCGCACGCCCTGCCCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGCTGCGGGAGCGCAGCGCTGTCCGCGCGCACGCCCTGCCCAAGG  250

seq1  GGTGCGGGCCGGCCGGCCAGCGCAAGGAGGGATGCGCGCTCTCTTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGGGCCGGCCGGCCAGCGCAAGGAGGGATGCGCGCTCTCTTCTCTC  300

seq1  CCCCAGCGGCGAATGCCTGCGTGAGGGACCCCTTGCCCCAGGAAAGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCGGCGAATGCCTGCGTGAGGGACCCCTTGCCCCAGGAAAGGCTT  350

seq1  TCTCGGGGTGGCTGTGCCCGGATGCTCGCTGCCTGACACTTTAATGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGGGTGGCTGTGCCCGGATGCTCGCTGCCTGACACTTTAATGGAGT  400

seq1  TTGGAAACTGCAAAGGAGTGGAGGCCCGGGAAAAGGGGGGAGTGGCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACTGCAAAGGAGTGGAGGCCCGGGAAAAGGGGGGAGTGGCTGAA  450

seq1  CCAGGATGGTAGCGCGAGGAGGTGGCGCAGGACTTTCCTTGGGGTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGGTAGCGCGAGGAGGTGGCGCAGGACTTTCCTTGGGGTCTCTT  500

seq1  CCAGCCTAACGTAGCTGGAAACCCGGATCGTTTAACCCTTTCAGTCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTAACGTAGCTGGAAACCCGGATCGTTTAACCCTTTCAGTCTAAG  550

seq1  CCAAAATTGAGCGGTTTTGTTTGTACCCCCACCTCCACCCCCGCACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTGAGCGGTTTTGTTTGTACCCCCACCTCCACCCCCGCACAGAA  600

seq1  CTGTGCCAGGGTGTCCAGCCCACATACTGGTGGGAGGTGAGGGAGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCAGGGTGTCCAGCCCACATACTGGTGGGAGGTGAGGGAGAAAGA  650

seq1  AGGGAAGGGTAGGAAGGTAA  670
      ||||||||||||||||||||
seq2  AGGGAAGGGTAGGAAGGTAA  670

seq1: chr15_56648336_56649443
seq2: B6Ng01-064C11.g_71_1165 (reverse)

seq1  GAGACAG-TAAAGGTTAAGCATTCAAAGGAAGGATGGGTTAGGTTTTGGG  49
      ||||||| ||||||||||||| ||||| |||||  |||||||| ||||| 
seq2  GAGACAGATAAAGGTTAAGCA-TCAAA-GAAGGTAGGGTTAGG-TTTGGT  47

seq1  TCAGAGGTATCCAGCTTAGGTGATTAGTTATGTGATTTTCTATTTTAGCT  99
      ||| ||||||| |||| |||||||||| ||||||| |||||| |||||||
seq2  TCA-AGGTATCAAGCTAAGGTGATTAG-TATGTGA-TTTCTA-TTTAGCT  93

seq1  GCCCCTGTGCCAGATTCCATGGACTGGATTGAGACCTGTGAAACCGTTGT  149
      | ||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  G-CCCTGTG-CAGATTCCATGGACTGGA-TGAGACCTGTGAAACCGTTGT  140

seq1  AAGAAACACTCATGGCAATGCTTAGGAGTGGGTCAGTGCAAGTGACAGCA  199
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  AAGAAACA-TCATGGCAATGCTTAGGAGT-GGTCAGTGCAAGTGACAGCA  188

seq1  CAGCAGAATAAACATGAGCTTCAATAAGCTTGAATAAAATCACTGAAGAA  249
      ||||||||||||||||||||||||| |||||||   ||||||||||||||
seq2  CAGCAGAATAAACATGAGCTTCAAT-AGCTTGA--TAAATCACTGAAGAA  235

seq1  GTTGAGAAAGAAGGCTTGAACATGTATGAATCCCTTTCTTCTT-CCCTTC  298
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTGAGAAAGAAGGCTTGAACATGTATGAATCCCTTTCTTCTTCCCCTTC  285

seq1  CTCCAATCTGGCCAAGAGAAGTT-CCAAAGACTAATGTCTTCCGGAGTAT  347
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  CTCCAATCTGGCC-AGAGAAGTTCCCAAAGACTAATGTCTTCCGGAGTAT  334

seq1  AAATAGGTTTGAAAATGAAGTGTTAGTTTTAGCACTGTCCATTGATATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTTTGAAAATGAAGTGTTAGTTTTAGCACTGTCCATTGATATCT  384

seq1  AGAGTTCAATCCAGATATTAATTTCATAAATATATTATAAATAGGGGCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCAATCCAGATATTAATTTCATAAATATATTATAAATAGGGGCTC  434

seq1  ATCTATTAAGAACACTTGTTGATTTTTTTAGAAGAGATGTATTTGATCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTAAGAACACTTGTTGATTTTTTTAGAAGAGATGTATTTGATCCT  484

seq1  TAGCCCCTTCATGATAGATCATAATCTTGTAATTCTAGTTCCAGGTGCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCTTCATGATAGATCATAATCTTGTAATTCTAGTTCCAGGTGCCC  534

seq1  TCTGACTTCTGTCTTCATCAGGAAGACATGTGGTGCTCATGCAGACAGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTCTGTCTTCATCAGGAAGACATGTGGTGCTCATGCAGACAGGC  584

seq1  AGACAAAACACACAGAGTAAATACATCACAAAAAATTAAATAATTACTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAACACACAGAGTAAATACATCACAAAAAATTAAATAATTACTAA  634

seq1  TGAGACACATGATTATTTACTATAGTGCTGGCCTTCGTCGGCATCTGTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACACATGATTATTTACTATAGTGCTGGCCTTCGTCGGCATCTGTGT  684

seq1  GTTCTATCCCCTCCCCCAACCCTCTTTCTCTTTTTCTCTTTCACTTACTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATCCCCTCCCCCAACCCTCTTTCTCTTTTTCTCTTTCACTTACTA  734

seq1  AACTAGGCTACATGCCAGGCTGTGCTTATTCATTCTAAAGCTTATGGACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGCTACATGCCAGGCTGTGCTTATTCATTCTAAAGCTTATGGACC  784

seq1  CCAGGAGCTTTACATGGAGTGAGCTAATTAATCCAATTACTGTAATTACG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCTTTACATGGAGTGAGCTAATTAATCCAATTACTGTAATTACG  834

seq1  ATGACTGTAATAGGACTATGCAAAGAAGTCTGCAAGTTAAGTCAACCACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTAATAGGACTATGCAAAGAAGTCTGCAAGTTAAGTCAACCACT  884

seq1  AATATATGACTTTGCAAAATCACTTAACTGCTCCATCAGCATTCTCTGCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGACTTTGCAAAATCACTTAACTGCTCCATCAGCATTCTCTGCC  934

seq1  AAGCTAGACTGAATGGATGAGTCTAAAACCCAGAAAATTCTGTACTTTAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGACTGAATGGATGAGTCTAAAACCCAGAAAATTCTGTACTTTAC  984

seq1  TGTTTTAAAATTGTGAATAGCAAAGATTTGTTTGCAAACCAAAATTTAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAAATTGTGAATAGCAAAGATTTGTTTGCAAACCAAAATTTAAT  1034

seq1  ACATCCTTCACAATCTTAAAGGTGCCATTTTATACCCGTACTTCAGTGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTTCACAATCTTAAAGGTGCCATTTTATACCCGTACTTCAGTGGA  1084

seq1  CACTGGAATTC  1108
      |||||||||||
seq2  CACTGGAATTC  1095