BAC Information

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BAC

Clone NameB6Ng01-070H13
Chromosome15 (Build37)
Map Location 48,272,274 - 48,435,356
singlet/doubletdoublet
Overlap geneCsmd3
Upstream geneLOC100039485, LOC100039493
Downstream geneEG665146, LOC100039600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070H13.bB6Ng01-070H13.g
ACCDH888469DH888470
length1,1301,169
definitionDH888469|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H13, 5' end.DH888470|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,434,331 - 48,435,356)(48,272,274 - 48,273,460)
sequence
gaattcttcctatttgaaaaaactgcagggtcaaaaatggagaagagact
gaaggaaagacagttaaatgacctgctcaaattgggatccatcttatggg
gtcgcagacaggtaccaaggcttaacactattactgatgttatgatgtgc
ttacagacaggaccctagcatggctgtcctttgagcggccataccagcag
ctgactgagacagatgcagatacttacactcaaccattggactgaaatca
gggactcctatggttgaattaagggaaggattgaagaagctgaaggggag
agagaccccataggaagatgagtagtctcaactaacctggaccccaggga
gctcacagagtctgagccaccaaccaggcatcatacatgggctggcctga
ggcccctgtatatatatagcagaggaatgccaggtctggcctcagtggaa
gatgctcctcatcctgtagggacttgaggctccagggaaggaggaggcct
tgtgaggagcatcctctcagaggcaaagagaggaggagtgggataaaaaa
ctgtgagaggagggactgagaagggggcaatgcctgaatggaaataaaca
aaataataataaaaaagagaaattaatgatgaggaaaaaatagaaaaagt
aatctcatctaagtctaaaattgtaattttatattagagaaatattcatg
atgatacaatggatactggccactacttaattacagcctaattttggagt
tttctgtgacatatgatgtattttcatatcaatgaacttcagctactctg
aaagcagacaatagcaatttaaatttctgtatgttaccagagaagccaca
atgagagtttgaagtgcatagtttatatcacatacattgaaaatattaaa
tggtttctttaatttgggggtgacacctgatatatttcaacaaaaatagg
aatctaatattcaatctactctataattttatcatgttcattgtgctcac
acatgaatctttacatttttcttaaaagcaaaaaggactgtaaaatagtc
tcacataaatactgcataataccctagtgtatttgtcactagtctcagct
gcaataattgtttcctaccttctcctgaaa
taaatttagaagtgaaaatgaataagtataattttcatgaccacactaaa
aattatgtactttaataaatatgcaggaaaacattgtaaaattttactaa
tgtttatttccataaagatataaggtatactttcaacaacaaacatttgt
atctaaaataaaatagtaaaaatttgcatttatatggctctgactttgct
gtaaaatttgaaaatttttttcttatttgcctgatatttattaattttag
tttcatgcatatgtaatctttccctctttgctgagactgcttaagataaa
ttgaaaattgtttttgctacacagcaaaacacattttctttataacaaag
aaaatatataaatataatacaatagtatattagtaatactgtttgtgtca
ggttagagaatttctaactaatggaaaggtaaaattatgtattaaaacaa
atgatatttgctacttatagcaatacactatttttaaaaatatcagtatg
tggtatattttaaatatggaagtaaacatacatacacacacacacacaca
cacacacacacacacacacacacacacacttgaaagttccaaattgttca
tagtgaaaagttcatttgcagaaaatataaactcttaaaggcattgagag
attagaatttgaattagatctgaagagactgctcagcatttaaaagccta
gttgctcttatagaggaagcccttcagctccccaaaccctcagctttgtt
tactattctccagtctcaaggaattcaatgcacctttctaggctttaggg
ggcactaaaacacgtgtgctgcacaaacatacatggatgaaaaatatacc
tacacataaaataaaggttataattccaataatttaaaattggtaaaatt
gattataaacttgagttagagtgatgatttagttgcaagtatgtcaaaga
gacttttatgaatacattgctgcatttcctctgtcctctgaagtctagac
tatagactttgtagttcaatttcgaaacatgtactttggtaataatgacc
acctaaaacccaacaataacaggaatgcatcataggtttttatactgggg
tcctggataagtgctatgcagctccaagttgtattggttcaaagcatggt
catgcatgctttgaagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_48434331_48435356
seq2: B6Ng01-070H13.b_151_1173 (reverse)

seq1  TCTCAGTAGAA-GTAGG-AACAATTATTGCAGCTGAAGGACTAGTGAC-A  47
      | |||| |||| ||||| ||||||||||||||||||  |||||||||| |
seq2  TTTCAGGAGAAGGTAGGAAACAATTATTGCAGCTGA--GACTAGTGACAA  48

seq1  ATACACTAGGGTATTATGCAGTATTTAATGTGAAGACCTATTTTACAGTC  97
      |||||||||||||||||||||||||| ||||| ||| |||||||||||||
seq2  ATACACTAGGGTATTATGCAGTATTT-ATGTG-AGA-CTATTTTACAGTC  95

seq1  CTTTTTGCTTTTAAGAAAAATGTAAAGATTCATGTGTGAGCACAATGAAC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCTTTTAAGAAAAATGTAAAGATTCATGTGTGAGCACAATGAAC  145

seq1  ATGATAAAATTATAAGAGTAGATTGAATATTAGATTCCTATTTTTGTTGA  197
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGATAAAATTAT-AGAGTAGATTGAATATTAGATTCCTATTTTTGTTGA  194

seq1  AATATATCAGGTGTCACCCCCAAATTAAAGAAACCATTTAATATTTTCAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCAGGTGTCACCCCCAAATTAAAGAAACCATTTAATATTTTCAA  244

seq1  TGTATGTGATATAAACTATGCACTTCAAACTCTCATTGTGGCTTCTCTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGATATAAACTATGCACTTCAAACTCTCATTGTGGCTTCTCTGG  294

seq1  TAACATACAGAAATTTAAATTGCTATTGTCTGCTTTCAGAGTAGCTGAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATACAGAAATTTAAATTGCTATTGTCTGCTTTCAGAGTAGCTGAAG  344

seq1  TTCATTGATATGAAAATACATCATATGTCACAGAAAACTCCAAAATTAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGATATGAAAATACATCATATGTCACAGAAAACTCCAAAATTAGG  394

seq1  CTGTAATTAAGTAGTGGCCAGTATCCATTGTATCATCATGAATATTTCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTAAGTAGTGGCCAGTATCCATTGTATCATCATGAATATTTCTC  444

seq1  TAATATAAAATTACAATTTTAGACTTAGATGAGATTACTTTTTCTATTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAAATTACAATTTTAGACTTAGATGAGATTACTTTTTCTATTTT  494

seq1  TTCCTCATCATTAATTTCTCTTTTTTATTATTATTTTGTTTATTTCCATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATCATTAATTTCTCTTTTTTATTATTATTTTGTTTATTTCCATT  544

seq1  CAGGCATTGCCCCCTTCTCAGTCCCTCCTCTCACAGTTTTTTATCCCACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTGCCCCCTTCTCAGTCCCTCCTCTCACAGTTTTTTATCCCACT  594

seq1  CCTCCTCTCTTTGCCTCTGAGAGGATGCTCCTCACAAGGCCTCCTCCTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTCTTTGCCTCTGAGAGGATGCTCCTCACAAGGCCTCCTCCTTC  644

seq1  CCTGGAGCCTCAAGTCCCTACAGGATGAGGAGCATCTTCCACTGAGGCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCCTCAAGTCCCTACAGGATGAGGAGCATCTTCCACTGAGGCCA  694

seq1  GACCTGGCATTCCTCTGCTATATATATACAGGGGCCTCAGGCCAGCCCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGCATTCCTCTGCTATATATATACAGGGGCCTCAGGCCAGCCCAT  744

seq1  GTATGATGCCTGGTTGGTGGCTCAGACTCTGTGAGCTCCCTGGGGTCCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATGCCTGGTTGGTGGCTCAGACTCTGTGAGCTCCCTGGGGTCCAG  794

seq1  GTTAGTTGAGACTACTCATCTTCCTATGGGGTCTCTCTCCCCTTCAGCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTGAGACTACTCATCTTCCTATGGGGTCTCTCTCCCCTTCAGCTT  844

seq1  CTTCAATCCTTCCCTTAATTCAACCATAGGAGTCCCTGATTTCAGTCCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATCCTTCCCTTAATTCAACCATAGGAGTCCCTGATTTCAGTCCAA  894

seq1  TGGTTGAGTGTAAGTATCTGCATCTGTCTCAGTCAGCTGCTGGTATGGCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGTGTAAGTATCTGCATCTGTCTCAGTCAGCTGCTGGTATGGCC  944

seq1  GCTCAAAGGACAGCCATGCTAGGGTCCTGTCTGTAAGCACATCATAACAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGGACAGCCATGCTAGGGTCCTGTCTGTAAGCACATCATAACAT  994

seq1  CAGTAATAGTGTTAAGCCTTGGTACCTGT  1026
      |||||||||||||||||||||||||||||
seq2  CAGTAATAGTGTTAAGCCTTGGTACCTGT  1023

seq1: chr15_48272274_48273460
seq2: B6Ng01-070H13.g_76_1244

seq1  TAAATTTAGAAGTGAAAATGAATAAGTATAATTTTCATGACCACACTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAGAAGTGAAAATGAATAAGTATAATTTTCATGACCACACTAAA  50

seq1  AATTATGTACTTTAATAAATATGCAGGAAAACATTGTAAAATTTTACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTACTTTAATAAATATGCAGGAAAACATTGTAAAATTTTACTAA  100

seq1  TGTTTATTTCCATAAAGATATAAGGTATACTTTCAACAACAAACATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTCCATAAAGATATAAGGTATACTTTCAACAACAAACATTTGT  150

seq1  ATCTAAAATAAAATAGTAAAAATTTGCATTTATATGGCTCTGACTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAATAAAATAGTAAAAATTTGCATTTATATGGCTCTGACTTTGCT  200

seq1  GTAAAATTTGAAAATTTTTTTCTTATTTGCCTGATATTTATTAATTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTGAAAATTTTTTTCTTATTTGCCTGATATTTATTAATTTTAG  250

seq1  TTTCATGCATATGTAATCTTTCCCTCTTTGCTGAGACTGCTTAAGATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCATATGTAATCTTTCCCTCTTTGCTGAGACTGCTTAAGATAAA  300

seq1  TTGAAAATTGTTTTTGCTACACAGCAAAACACATTTTCTTTATAACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTGTTTTTGCTACACAGCAAAACACATTTTCTTTATAACAAAG  350

seq1  AAAATATATAAATATAATACAATAGTATATTAGTAATACTGTTTGTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATAAATATAATACAATAGTATATTAGTAATACTGTTTGTGTCA  400

seq1  GGTTAGAGAATTTCTAACTAATGGAAAGGTAAAATTATGTATTAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAGAATTTCTAACTAATGGAAAGGTAAAATTATGTATTAAAACAA  450

seq1  ATGATATTTGCTACTTATAGCAATACACTATTTTTAAAAATATCAGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTGCTACTTATAGCAATACACTATTTTTAAAAATATCAGTATG  500

seq1  TGGTATATTTTAAATATGGAAGTAAACATACATACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATATTTTAAATATGGAAGTAAACATACATACACACACACACACACA  550

seq1  CACACACACACACACACACACACACACACTTGAAAGTTCCAAATTGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACTTGAAAGTTCCAAATTGTTCA  600

seq1  TAGTGAAAAGTTCATTTGCAGAAAATATAAACTCTTAAAGGCATTGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAAAGTTCATTTGCAGAAAATATAAACTCTTAAAGGCATTGAGAG  650

seq1  ATTAGAATTTGAATTAGATCTGAAGAGACTGCTCAGCATTTAAAAGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATTTGAATTAGATCTGAAGAGACTGCTCAGCATTTAAAAGCCTA  700

seq1  GTTGCTCTTATAGAGGAAGCCCTTCAGCTCCCCAAACCCTCAGCTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCTTATAGAGGAAGCCCTTCAGCTCCCCAAACCCTCAGCTTTGTT  750

seq1  TACTATTCTCCAGTCTCAAGGAATTCAATGCACCTTTCTAGGCTTTAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCTCCAGTCTCAAGGAATTCAATGCACCTTTCTAGGCTTTAGGG  800

seq1  GGCACTAAAACACGTGTGCTGCACAAACATACATGGATGAAAAATATACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAAAACACGTGTGCTGCACAAACATACATGGATGAAAAATATACC  850

seq1  TACACATAAAATAAAGGTTATAATTCCAATAATTTAAAATTGGTAAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAAAATAAAGGTTATAATTCCAATAATTTAAAATTGGTAAAATT  900

seq1  GATTATAAACTTGAGTTAGAGTGATGATTTAGTTGCAAGTATGTCAAAGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATTATAAACTTGAGTTAGAGTGATGATTTAGTTGCAAGTATGTCAAA-G  949

seq1  AGACTTTTATGAATACATTGCTGCATTTCCTCTGTCCTTCTGAAAGTCTA  1000
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  AGACTTTTATGAATACATTGCTGCATTTCCTCTGTCC-TCTG-AAGTCTA  997

seq1  GACTATAGACTTTGTAGTTCAATTTCGAAACATGTAACTTTGGTAATAAT  1050
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GACTATAGACTTTGTAGTTCAATTTCGAAACATGT-ACTTTGGTAATAAT  1046

seq1  GACAACCTAAAAACCCAACAATAACAGGAATGCATCATAAGTATTTTATA  1100
      ||| |||| |||||||||||||||||||||||||||||| || |||||||
seq2  GACCACCT-AAAACCCAACAATAACAGGAATGCATCATAGGT-TTTTATA  1094

seq1  CTGGGGTCCTGGATAAAGTGCCTATGCAGTCTTCAGAGTTTGTATTGTGT  1150
      |||||||||||||| ||||| |||||||| || || || ||||||||  |
seq2  CTGGGGTCCTGGAT-AAGTG-CTATGCAG-CTCCA-AG-TTGTATTGGTT  1139

seq1  CAAAGCATTGTGTCATTGCATGCTTTTGTAAAAGTTC  1187
      ||||||||   |||| ||||||||||     ||||||
seq2  CAAAGCAT--GGTCA-TGCATGCTTT----GAAGTTC  1169