BAC Information

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BAC

Clone NameB6Ng01-070J05
Chromosome15 (Build37)
Map Location 86,498,890 - 86,499,863
singlet/doubletsinglet
Overlap genenone
Upstream genePpara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
Downstream geneLOC100042309, AW049604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070J05.b
ACCDH888539
length970
definitionDH888539|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J05, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgatcttgtggccttggaaggtgtgaagtcaccccggtttcct
tcatacctatttctacttgctgacccgataggagatttgccttgcacctc
agataatgttcttgtgcacaataactgacctgcctccctctgcttcctgc
aatttacagcgtagcctaggttcctaaatatcattttgcttttcttttct
tcccttgggaactttcatagggctggagttctctgttctctgcacctgtt
ataatcctgctgtgctctccaaactgaatgtagtcacctgggaactaccc
ttccccccaaaatgtctgtactataaagtgtttctgtctctggtgatatt
ctgcatgccctccagggtgacaagttactgttttctgtctggtgaccccg
agtatgcaactgtgcccctggctttctattcccccatggttggctattct
gtgcacacttccctaagtaagattgaattatttctatgtcctgtgcccca
tggaaagagatagccaccttcatctggaggttccttccctctgaggatgg
gctaatacgggtgaaggaggcctggaagcactctccaagatgctgaacaa
cgggtcattctgggtagctggccctgcactgtgactgcagattgggaaag
atgtttatttgactcatatggcccaaactgaaatttctctatgtttatgg
gtacaatgtcctctcatttgttcaaaaaagcaggttttatatcgttaact
ttttaatttaaacttttattggagtttagtaataaagtgagtgacgcgga
aatacagagttcttatgaagccttactagttggtagactactactggggc
gggcgattcaaagggagaagacagtctggctctggtgtctcaccgtccta
cctctaactaacccttctatatatgcgaataacttctcagaagaagatga
agagaaagcagcattacagt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_86498890_86499863
seq2: B6Ng01-070J05.b_45_1013

seq1  GAATTCCTGATCATGTGGCCTTGGAAGGATGTGAAGTCACCCCAGTTTCA  50
      |||||||||||| ||||||||||||||| |||||||||||||| ||||| 
seq2  GAATTCCTGATCTTGTGGCCTTGGAAGG-TGTGAAGTCACCCCGGTTTCC  49

seq1  CTCATACCTATTTCTACTTGCTGAGCCAATAGGAGAGTTGCCTTGGACCT  100
       ||||||||||||||||||||||| || |||||||| |||||||| ||||
seq2  TTCATACCTATTTCTACTTGCTGACCCGATAGGAGATTTGCCTTGCACCT  99

seq1  CAGATAATGTTCTTGTGCACAATAACTGACCTGCCACCCTCTGCTTCCTG  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGATAATGTTCTTGTGCACAATAACTGACCTGCCTCCCTCTGCTTCCTG  149

seq1  CAATTTACAGCGTAGCCTAGGTTCCTAAATATCATTTTGCTTTTCTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTACAGCGTAGCCTAGGTTCCTAAATATCATTTTGCTTTTCTTTTC  199

seq1  TTCCCTTGGGAACTTTCATAGGGCTGGAGTTCTCTGTTCTCTGCACCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTGGGAACTTTCATAGGGCTGGAGTTCTCTGTTCTCTGCACCTGT  249

seq1  TAGAATCCTGCTGTGCTCTCCAAAGTGAATGTAGTCACCTGGGAACTACC  300
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATAATCCTGCTGTGCTCTCCAAACTGAATGTAGTCACCTGGGAACTACC  299

seq1  CTTCCCCCCAAAATGTCTGTACTATAAAGTGTTTCTGTCTCTGGTGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCCAAAATGTCTGTACTATAAAGTGTTTCTGTCTCTGGTGATAT  349

seq1  TCTGCATGCCCTCAAGGGTGACAAGTTACTGTTTTCTGTCTGGTGACCCC  400
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGCCCTCCAGGGTGACAAGTTACTGTTTTCTGTCTGGTGACCCC  399

seq1  AAGTATGCAACTGTACCCCTGGCTTTCTATTCCCCCAGGGTTGGCTATTC  450
       ||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  GAGTATGCAACTGTGCCCCTGGCTTTCTATTCCCCCATGGTTGGCTATTC  449

seq1  TGTGCACACGTAGCTAAGTAAGAGTGAATTAGTTCTGTGTCCTGTGCCCC  500
      ||||||||| |  |||||||||| ||||||| |||| |||||||||||||
seq2  TGTGCACACTTCCCTAAGTAAGATTGAATTATTTCTATGTCCTGTGCCCC  499

seq1  ATGGAAAGAGATAGCCACCTTCATCTGGAGGTTCCTTCCCTCTGAGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGAGATAGCCACCTTCATCTGGAGGTTCCTTCCCTCTGAGGATG  549

seq1  GGCTAATAGGGGTGAAGGAGGCCTGGAAGCACTCTCCAGGATGCTGAGCA  600
      |||||||| ||||||||||||||||||||||||||||| |||||||| ||
seq2  GGCTAATACGGGTGAAGGAGGCCTGGAAGCACTCTCCAAGATGCTGAACA  599

seq1  GTGGGTCATTCTGGGTAGCTTGCCCTGCACTGTGACTGCAGTTTGGGAAA  650
        |||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  ACGGGTCATTCTGGGTAGCTGGCCCTGCACTGTGACTGCAGATTGGGAAA  649

seq1  GATGTTTATTTGACTCATATCCAAGAAACGGAATTTTCTCTATGTTTATG  700
      ||||||||||||||||||||     |||| ||| ||||||||||||||||
seq2  GATGTTTATTTGACTCATATGGCCCAAACTGAAATTTCTCTATGTTTATG  699

seq1  GGTACAATGTCCTCTCAGGTTGTTCAAAAAAGCAGGTTTTAGACCGTTAA  750
      |||||||||||||||||  |||||||||||||||||||||| | ||||||
seq2  GGTACAATGTCCTCTCA-TTTGTTCAAAAAAGCAGGTTTTATATCGTTAA  748

seq1  CTTTTTAATTTTACCTTTTATTGGAGTTTAAATAACAAGGTGAGTGAGGC  800
      ||||||||||| | ||||||||||||||| | ||| || |||||||| ||
seq2  CTTTTTAATTTAAACTTTTATTGGAGTTT-AGTAATAAAGTGAGTGACGC  797

seq1  GCCCAATACAGAGCGATTATGAAGCAGTAAAAGTTGTTAGAGTACTCCTG  850
      |   |||||||||   |||||||||  ||  ||||| |||| |||| |||
seq2  G-GAAATACAGAGTTCTTATGAAGCCTTACTAGTTGGTAGACTACTACTG  846

seq1  GGGCAGGCAAATCAGAGGGAGAAGACAGTCTGGCTATGGTGGCTCCCAGC  900
      |||| ||| | ||| |||||||||||||||||||| ||||| ||| | | 
seq2  GGGCGGGCGATTCAAAGGGAGAAGACAGTCTGGCTCTGGTGTCTCACCGT  896

seq1  ACAACCTTTAACTAACCCTTCTATATAATGGGAATAACTTGTCAACAAAA  950
       | |||| |||||||||||||||||| ||| ||||||||| |||  | ||
seq2  CCTACCTCTAACTAACCCTTCTATAT-ATGCGAATAACTTCTCAGAAGAA  945

seq1  AATGAAGAGAAATCAGCATTACAG  974
       ||||||||||| |||||||||||
seq2  GATGAAGAGAAAGCAGCATTACAG  969