BAC Information

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BAC

Clone NameB6Ng01-071E01
Chromosome15 (Build37)
Map Location 16,095,935 - 16,255,457
singlet/doubletdoublet
Overlap geneLOC624183
Upstream geneLOC100040033, LOC100040046, EG239341, LOC100040087
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071E01.bB6Ng01-071E01.g
ACCDH889004DH889005
length2961,196
definitionDH889004|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E01, 5' end.DH889005|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,095,935 - 16,096,235)(16,254,266 - 16,255,457)
sequence
agaagatattcctgatgaaaaagtacaaaggttcagctctaaatattatt
ttttctgacctccttaaaaatgatatcatttaattccttccttccctcct
tccttccttccttccttccatacttccttccttccttccttctttccttc
cttttggttccctccatctaagagactccagtctcttgaggggtaagttc
ttgatctctgttttaatacagatttttttttagttaagttgttgtcttgt
ttggttcttcatatcatccggcatatgctgcctggttggtggtata
gaattctggaatctattgaccacattgcaaagtgagtctctgtccgagta
ttaatatttgaatctctttcatttctaaaacaaacaaacaaacaaacaaa
caaaaaacccagaaacatctctaagtagcattgccagtaaacttagaaat
tctcaaaatctgcataccgccctttttctagcaatagttatctgaagaaa
taactacagagcattttcatcattatcgttaacgagcatcccatatgctt
gcttcagatgatttatcggttgatggttaagtggtaccatctctgaaaat
attacaatccaaccagtgtaattacagtttctacttactggtagaacctg
gcgattttcagtcatagccaggtgtactggctagttttgtatcaacttga
cacaagctggagttattaaagagaaaggagcttcagttgggaaaatgcct
ccatgaaatccagccgtaaggcattttctcaattagtgatcaaggaggag
ggccccttgtgtgtgggaccatctctgtactgatagtcttggttctataa
gagagcaggctgagcaagccaggggaagcaagcaggccagtaagtaacac
ccctccatggcctctgcatggccttcctgacctgcttgagtttcagtcct
gacttcctttggtgatcaacagcaatgtgaaaagtgtaagctgaataaac
cctttcctccccaacttgcttcttggtcatgatgtttgtacaggaataga
aaccctgactaagacaccaggtttctttcaaatttacgtttctagttatt
ttggtaaaggagggatggaacactattttgtgattttgtaatcattgtat
cagcacatacactttcttcttgtgcatgttaaaatatatttaatcactga
atgtaatttctattttaaaaacttcagttttcattgctaagacttactgt
aataataatctggtcattaattcaaataataatttacaactctttttaaa
gtaacagtgatggcagtctgagaatctttttcaaatgatgacctttttaa
tgccagctatggtgttttgatttcattggatctttgtagaacccaccaac
ttaatccaaacaacctcttccacccttcttgaggcttccatttacctctc
tttagaagaacattggatatctttgtgtgcacactacttatctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16095935_16096235
seq2: B6Ng01-071E01.b_46_347

seq1  GAATTCAGAAGATATTCCTGATGAAAAAGTACAAAGGTTCAGCTCTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGATATTCCTGATGAAAAAGTACAAAGGTTCAGCTCTAAAT  50

seq1  ATTATTTTTTCTGACCTCCTTAAAAATGATATCATTTAATTCCTTCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTCTGACCTCCTTAAAAATGATATCATTTAATTCCTTCCTTC  100

seq1  CCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  150
      ||||||||||||||||||||||||| | |||||||||||||||||||| |
seq2  CCTCCTTCCTTCCTTCCTTCCTTCCATACTTCCTTCCTTCCTTCCTTCTT  150

seq1  TCCTTCCTTTCCATTCCCATATTCCTGGGGCCTCCAGTCTCTTGAGGGTT  200
      ||||||||||   |||||    ||   | | ||||||||||||||||| |
seq2  TCCTTCCTTTTGGTTCCCTCCATCTAAGAGACTCCAGTCTCTTGAGGGGT  200

seq1  AGGTGCATCATCTCTGAATGAACACAGA-CCCAGCAGACCTCTGCTGTAT  249
      | || | | |||||||  | || |||||         |  |  | ||| |
seq2  AAGTTCTTGATCTCTGTTTTAATACAGATTTTTTTTTAGTTAAGTTGT-T  249

seq1  ATC-TGTTGGGTGCTTCATATCAGCTGGCATATGCTGCCTGGTTGGTGGT  298
       || |||| ||| |||||||||| | ||||||||||||||||||||||||
seq2  GTCTTGTTTGGTTCTTCATATCATCCGGCATATGCTGCCTGGTTGGTGGT  299

seq1  ATA  301
      |||
seq2  ATA  302

seq1: chr15_16254266_16255457
seq2: B6Ng01-071E01.g_65_1260 (reverse)

seq1  GAGAGATAGTAAGTGTGCACACAAAGAAAATTCATAGTCTTCTAAAAGAG  50
      ||||||||   |||||||||||||||| |    ||  |||||| ||||||
seq2  GAGAGATAAGTAGTGTGCACACAAAGATATCCAATGTTCTTCT-AAAGAG  49

seq1  AAGTAAATGGAAGCCTCAAGAA-GGTTGAAGA-GTTGTTTGGATTTAAGT  98
      | |||||||||||||||||||| ||| ||||| |||||||||| ||||||
seq2  AGGTAAATGGAAGCCTCAAGAAGGGTGGAAGAGGTTGTTTGGA-TTAAGT  98

seq1  T-GTGGGGTCTACAAAGAT-CAATGAAATCAAAACA-CATAGCTGGCATT  145
      | ||||| ||||||||||| |||||||||||||||| |||||||||||||
seq2  TGGTGGGTTCTACAAAGATCCAATGAAATCAAAACACCATAGCTGGCATT  148

seq1  AAAAAGGTCATCATTTG-AAAAGATTCTCAGACTGCCATCACTGTTACTT  194
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAAGGTCATCATTTGAAAAAGATTCTCAGACTGCCATCACTGTTACTT  198

seq1  TAAAAAGAGTTGTAAATTATTATTTGAATTAATGACCAGATTATTATTAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGTTGTAAATTATTATTTGAATTAATGACCAGATTATTATTAC  248

seq1  AGTAAGTCTTAGCAATGAAAACTGAAGTTTTTAAAATAGAAATTACATTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTCTTAGCAATGAAAACTGAAGTTTTTAAAATAGAAATTACATTC  298

seq1  AGTGATTAAATATATTTTAACATGCACAAGAAGAAAGTGTATGTGCTGAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTAAATATATTTTAACATGCACAAGAAGAAAGTGTATGTGCTGAT  348

seq1  ACAATGATTACAAAATCACAAAATAGTGTTCCATCCCTCCTTTACCAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATTACAAAATCACAAAATAGTGTTCCATCCCTCCTTTACCAAAA  398

seq1  TAACTAGAAACGTAAATTTGAAAGAAACCTGGTGTCTTAGTCAGGGTTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGAAACGTAAATTTGAAAGAAACCTGGTGTCTTAGTCAGGGTTTC  448

seq1  TATTCCTGTACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGTACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGT  498

seq1  TTATTCAGCTTACACTTTTCACATTGCTGTTGATCACCAAAGGAAGTCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGCTTACACTTTTCACATTGCTGTTGATCACCAAAGGAAGTCAG  548

seq1  GACTGAAACTCAAGCAGGTCAGGAAGGCCATGCAGAGGCCATGGAGGGGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAACTCAAGCAGGTCAGGAAGGCCATGCAGAGGCCATGGAGGGGT  598

seq1  GTTACTTACTGGCCTGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTACTGGCCTGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTT  648

seq1  ATAGAACCAAGACTATCAGTACAGAGATGGTCCCACACACAAGGGGCCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACCAAGACTATCAGTACAGAGATGGTCCCACACACAAGGGGCCCT  698

seq1  CCTCCTTGATCACTAATTGAGAAAATGCCTTACGGCTGGATTTCATGGAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGATCACTAATTGAGAAAATGCCTTACGGCTGGATTTCATGGAG  748

seq1  GCATTTTCCCAACTGAAGCTCCTTTCTCTTTAATAACTCCAGCTTGTGTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCCCAACTGAAGCTCCTTTCTCTTTAATAACTCCAGCTTGTGTC  798

seq1  AAGTTGATACAAAACTAGCCAGTACACCTGGCTATGACTGAAAATCGCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATACAAAACTAGCCAGTACACCTGGCTATGACTGAAAATCGCCA  848

seq1  GGTTCTACCAGTAAGTAGAAACTGTAATTACACTGGTTGGATTGTAATAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTACCAGTAAGTAGAAACTGTAATTACACTGGTTGGATTGTAATAT  898

seq1  TTTCAGAGATGGTACCACTTAACCATCAACCGATAAATCATCTGAAGCAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGATGGTACCACTTAACCATCAACCGATAAATCATCTGAAGCAA  948

seq1  GCATATGGGATGCTCGTTAACGATAATGATGAAAATGCTCTGTAGTTATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGGGATGCTCGTTAACGATAATGATGAAAATGCTCTGTAGTTATT  998

seq1  TCTTCAGATAACTATTGCTAGAAAAAGGGCGGTATGCAGATTTTGAGAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGATAACTATTGCTAGAAAAAGGGCGGTATGCAGATTTTGAGAAT  1048

seq1  TTCTAAGTTTACTGGCAATGCTACTTAGAGATGTTTCTGGGTTTTTTGTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTTTACTGGCAATGCTACTTAGAGATGTTTCTGGGTTTTTTGTT  1098

seq1  TGTTTGTTTGTTTGTTTGTTTTAGAAATGAAAGAGATTCAAATATTAATA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGTTTTAGAAATGAAAGAGATTCAAATATTAATA  1148

seq1  CTCGGACAGAGACTCACTTTGCAATGTGGTCAATAGATTCCAGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGACAGAGACTCACTTTGCAATGTGGTCAATAGATTCCAGAATTC  1196