BAC Information

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BAC

Clone NameB6Ng01-073E14
Chromosome15 (Build37)3 (Build37)
Map Location 80,670,287 - 80,670,591130,655,296 - 130,656,076
singlet/doubletsingletsinglet
Overlap geneTnrc6b
Upstream geneLOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981
Downstream geneAdsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073E14.bB6Ng01-073E14.g
ACCDH890464DH890465
length773783
definitionDH890464|Mus musculus domesticus DNA, BAC clone: B6Ng01-073E14, 5' end.DH890465|Mus musculus domesticus DNA, BAC clone: B6Ng01-073E14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,670,287 - 80,670,591)(130,655,296 - 130,656,076)
sequence
gaattccattgctttacgaatccatattcctccaaacaaaagcatggtca
gtctatctcagcaatacccaagtccctggcaccaacttctctctgttagg
gttttattgctgtgaagggacaatatggccaaggcaactatcacaaagga
aagcatttaattggagctggcttatggtttcaaaggtttagtccactatt
atgacatgaagcgtgcaagcatttaggtaggtatggtgctggaggagtca
agagttctaaatcttgatccaaaggcagacaggtggagactagcttctat
acagggaagagcttgagcttaggaggcctcaaagtcccgcctccatagtg
acacacttcctctaacaaggccacacctcctaatagtgccactccccatg
accaagctttcaaacaggtgcatctttggggccaaacttattcaaaccat
cacagacactacaatcaaggcaactcttgcaaaataaagcattttattgg
ggtcttgcttacagtttcagaagtttagtccatgtagtcatgacaaggaa
catggcagcatgccggcagatgcttgaatagtagttgagagctacatcct
gatccacaggcaagagagagagagagagagacagagacagacagagtgag
agagagagagagagacagagtgagagagagagacagagtgagagagagac
agccagagtgagagtcagagaaagacagagacagagagagagggagaagg
aggaggagaaggaaaggaggagg
gaattctgtttgaactccatctggctaaggcctcagcaaagcctttctct
ccttttccagacaccaaacagcagcagacatggaactcccacccatatca
acaatcctaacaaccctaacaatggacaagtctaacaagcttgggggtgg
ggggtgggcagccgcactcacagatagcatttcttccttcttccaaatgt
tatgtttcaaaatatggtatatgtgatggactaaagaatcgctatatttg
ggaaaggagtctgttccttcccagaaaacacaggagtaagcagtgaagga
aaactagattagaaaatggaagttttcttctgtggataagcgtcaagaag
cctcctgcagcgttcgttccctgggatgcctggtgcctgccttctgtctc
cctatggaatttcgccactggcttcaccttataattggctgtgtacttca
gatctaagcatcctgtctgttttctggatgaagagtttgttgtatgtttg
aatatgtcttcccgtctcaacagcacaggctaaactccgtgtccagacca
gacttaaccccaaatgattatcacccttcatggaacccagttattcccag
tttttatcccagagattaagacaattcttttgggttagagttttaaattt
tggtgtttaaataacttggcattgtggagaaagtcatggaagtgaccata
gagttctgaactgtagactttgaagtagttacattataaatatatacaaa
gtttaatttaaatacacaaagttttatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_80670287_80670591
seq2: B6Ng01-073E14.b_374_811

seq1  CCCGCCTACACAGAGACACACCTCCTCTAACAAGGCCACACCTCCTAATA  50
      ||||||| || || ||||||| ||||||||||||||||||||||||||||
seq2  CCCGCCTCCATAGTGACACACTTCCTCTAACAAGGCCACACCTCCTAATA  50

seq1  ATGCCACT---------------------------------------TAA  61
       |||||||                                        ||
seq2  GTGCCACTCCCCATGACCAAGCTTTCAAACAGGTGCATCTTTGGGGCCAA  100

seq1  GCATATTCAAACCACCACATACACATGA--CAAGTTTCCT-TTCTGACAG  108
       | ||||||||||| |||| ||||   |  ||||    || ||   | | 
seq2  ACTTATTCAAACCATCACAGACACTACAATCAAGGCAACTCTTGCAAAAT  150

seq1  AGCCCCTCTTTACT----TCTT--TGTCTAGTACACACTTAGACTCC---  149
      |   | | |||| |    ||||  |  |   | || |  |  | |||   
seq2  AAAGCAT-TTTATTGGGGTCTTGCTTACAGTTTCAGAAGTTTAGTCCATG  199

seq1  ---TCACTCTCAAGTGTCCAGTGTGAGGGT-CCAACTGGTGTTTCAGGAA  195
         ||| |  |||| |  || ||  ||  | ||  | | || ||   |||
seq2  TAGTCA-TGACAAG-GAACA-TGGCAGCATGCCGGCAGATGCTT---GAA  243

seq1  CAGT-GTT-----CTACCT-------------CAACAAAG---GCTAGGG  223
       ||| |||     |||| |             ||| | ||   |  || |
seq2  TAGTAGTTGAGAGCTACATCCTGATCCACAGGCAAGAGAGAGAGAGAGAG  293

seq1  AGGCAGGTAC-------GTGTG---------------CAGACTTAGCTAA  251
      || |||  ||       ||| |               |||| | ||  | 
seq2  AGACAGAGACAGACAGAGTGAGAGAGAGAGAGAGAGACAGAGTGAGAGAG  343

seq1  TTAGATTTCTT------------TCTTCAATCTGGCTCAGCCA-------  282
        |||     |             |   | |  |  ||||  |       
seq2  AGAGACAGAGTGAGAGAGAGACAGCCAGAGTGAGAGTCAGAGAAAGACAG  393

seq1  --------------GCTGAAG--------GAAGGAAAGGAGGAGG  305
                    |  ||||        ||||||||||||||||
seq2  AGACAGAGAGAGAGGGAGAAGGAGGAGGAGAAGGAAAGGAGGAGG  438

seq1: chr3_130655296_130656076
seq2: B6Ng01-073E14.g_70_852 (reverse)

seq1  ATATATATAAAACTTTGTGTATATAAA-TAAACTTTGTATATATTTATAA  49
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  ATATATATAAAACTTTGTGTATTTAAATTAAACTTTGTATATATTTATAA  50

seq1  TGTTAACTACTTCAAAGTCTACAGTTCAGAACTCTATGGTCACTTCCATG  99
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TAACTACTTCAAAGTCTACAGTTCAGAACTCTATGGTCACTTCCATG  99

seq1  ACTTTCTCCACAATGCCAAGTTATTTAAACACC-AAATTTAAAACTCTAA  148
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTTTCTCCACAATGCCAAGTTATTTAAACACCAAAATTTAAAACTCTAA  149

seq1  CCCAAAAGAATTGTCTTAATCTCTGGGAT-AAAACTGGGAATAACTGGGT  197
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCCAAAAGAATTGTCTTAATCTCTGGGATAAAAACTGGGAATAACTGGGT  199

seq1  TCCATGAAGGGTGATAATCATTTGGGGTTAAGTCTGGTCTGGACACGGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAAGGGTGATAATCATTTGGGGTTAAGTCTGGTCTGGACACGGAG  249

seq1  TTTAGCCTGTGCTGTTGAGACGGGAAGACATATTCAAACATACAACAAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTGTGCTGTTGAGACGGGAAGACATATTCAAACATACAACAAAC  299

seq1  TCTTCATCCAGAAAACAGACAGGATGCTTAGATCTGAAGTACACAGCCAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCCAGAAAACAGACAGGATGCTTAGATCTGAAGTACACAGCCAA  349

seq1  TTATAAGGTGAAGCCAGTGGCGAAATTCCATAGGGAGACAGAAGGCAGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGGTGAAGCCAGTGGCGAAATTCCATAGGGAGACAGAAGGCAGGC  399

seq1  ACCAGGCATCCCAGGGAACGAACGCTGCAGGAGGCTTCTTGACGCTTATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCATCCCAGGGAACGAACGCTGCAGGAGGCTTCTTGACGCTTATC  449

seq1  CACAGAAGAAAACTTCCATTTTCTAATCTAGTTTTCCTTCACTGCTTACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGAAAACTTCCATTTTCTAATCTAGTTTTCCTTCACTGCTTACT  499

seq1  CCTGTGTTTTCTGGGAAGGAACAGACTCCTTTCCCAAATATAGCGATTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTTTCTGGGAAGGAACAGACTCCTTTCCCAAATATAGCGATTCT  549

seq1  TTAGTCCATCACATATACCATATTTTGAAACATAACATTTGGAAGAAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCATCACATATACCATATTTTGAAACATAACATTTGGAAGAAGGA  599

seq1  AGAAATGCTATCTGTGAGTGCGGCTGCCCACCCCCCACCCCCAAGCTTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCTATCTGTGAGTGCGGCTGCCCACCCCCCACCCCCAAGCTTGT  649

seq1  TAGACTTGTCCATTGTTAGGGTTGTTAGGATTGTTGATATGGGTGGGAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTGTCCATTGTTAGGGTTGTTAGGATTGTTGATATGGGTGGGAGT  699

seq1  TCCATGTCTGCTGCTGTTTGGTGTCTGGAAAAGGAGAGAAAGGCTTTGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTCTGCTGCTGTTTGGTGTCTGGAAAAGGAGAGAAAGGCTTTGCT  749

seq1  GAGGCCTTAGCCAGATGGAGTTCAAACAGAATTC  781
      ||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTAGCCAGATGGAGTTCAAACAGAATTC  783