BAC Information

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BAC

Clone NameB6Ng01-073F20
Chromosome15 (Build37)16 (Build37)
Map Location 39,121,542 - 39,122,74255,386,414 - 55,386,950
singlet/doubletsingletsinglet
Overlap geneRims2
Upstream geneOdf1, LOC382986, LOC667563, Klf10, Azin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215
Downstream geneTm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073F20.bB6Ng01-073F20.g
ACCDH890520DH890521
length1,192993
definitionDH890520|Mus musculus domesticus DNA, BAC clone: B6Ng01-073F20, 5' end.DH890521|Mus musculus domesticus DNA, BAC clone: B6Ng01-073F20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,121,542 - 39,122,742)(55,386,414 - 55,386,950)
sequence
gaattcagataggtttggactttgttatcgccatcgctgacttcagtggg
acatagtcatacatttcttcaaaggaagcgagtcgcttttgcatgcacgt
ataatagatgctagaggactagaagttgcttctgtcctgctgtccttaca
cacattccctcgtatgaagattgcatatattgttccccatgcacttgaat
ctttacaagcagctgacttctgatgaattgcttgatgattgttgtggagg
gaagcaggtgttctctatgttttttaccttccagttttgacaggtcctag
ttacctgaccttgagcatagatcatcttgtgagttttctctctcctgtct
ttggaacagttatgctttgatttccaatttggaggtaggagcttcctcct
atgtcttaatgataaaagatgttttatttgtatttgggtaggatcctgga
accaagtttttgtttttgtttttccctgcattctggataaagggttttct
tcttaaatcttgttattagctatgatggctctttgcctttatcttaatcg
tcagagcctacttttcttccctgtggcttaaataaagcttttactatttt
atcagagtcaggaaatcatgtctgtacatcagcggccagtttacctttta
atgcctacaatatgcacttctccagaagtaggaatttatttctcttgtct
atgttttcaagtcttccagattacttatgaaggaaaaagaacttgtgatt
atcagtattctttgagtcttggtctttagccgtttgaagctgtcatttaa
ctgaatcttgctattgcacagtttgttaatttgatatctctgtctggaga
tgtagctttcttagacagaatgcttacctagaatgtgtgaagcctttttt
tcagtccccagaaccatataaaatggatgtggttgtgtatgcctgtatac
cagcatggacttgaagctcaagtatgagagtccagctcatctttgaatat
gtagcaagtttaatgtcattcctggatgcatgagatgctatctcaaaaac
aaacaacctacataataaattatacaatccctttacctgtctgatggtac
tacttcctttctctgtattgccaaaatggaccggtacactttgggttcct
tggatttgatggttgtctgtacttcttttctgatggcctcaa
gaattcctgatctttccaagacttttatcatgaatgggtattggatcttg
tcgaatgctttgtcctcatctaacgagttgatcatgtggtttttgtcttt
gagtttgtttatataatggattacgttgatggatttccatatattaaacc
acccctgcatccctggaataaaacctacttggtcaggatggatgattgtt
ttaatgtgttactgaattcggtgatcgagaattctattgaatatttttgc
atcaatattcataagggaaattggactgaagttctctatctttggatctt
tctgtggtttaggtatcagagtaattgtggcttcatagaatgagttgggt
agagtaccttctacttctattttgtggaatagtttgtgcagaactggaat
tagatcttctttgaagatctgatagaactctgcattaaacccatccggtc
ctgggctttgtttggctgggagactattaatgactgcttctatttcttta
ggggatatgggactgtttagatcgttaacttgatcctgatttaactttgg
tacctggtatctgtctagaaatttgcgcatttcgtccaggtcttccagtt
ttgttgactatagccttttgtagaaggatctgatggtgttttggatttct
tcaggatctgttgttatgtctcccttttcatttctgatttttgttaatta
ggatgttgtccctgtgccctctagtgagtctggttaagggtttatctatc
ttgttgatttttctcaaagaaccagctcctcgtttggttatttctttgaa
tagttcttcttgtttccaatgggttgatctcgcccctgagcttgattatt
tctgccatctgggtgaatttgctttcttttgttcaagagcttttagtgtg
ttgtcaagctgctagtgtgtgctctctcctgtctcttttgaggcctccag
actatgagtttcctcttagaaatgcttctagtgtccataagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39121542_39122742
seq2: B6Ng01-073F20.b_44_1235

seq1  GAATTCAGATAGGTTTGGACTTTGTTATCGCCATCGCTGACTTCAGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATAGGTTTGGACTTTGTTATCGCCATCGCTGACTTCAGTGGG  50

seq1  ACATAGTCATACATTTCTTCAAAGGAAGCGAGTCGCTTTTGCATGCACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTCATACATTTCTTCAAAGGAAGCGAGTCGCTTTTGCATGCACGT  100

seq1  ATAATAGATGCTAGAGGACTAGAAGTTGCTTCTGTCCTGCTGTCCTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGATGCTAGAGGACTAGAAGTTGCTTCTGTCCTGCTGTCCTTACA  150

seq1  CACATTCCCTCGTATGAAGATTGCATATATTGTTCCCCATGCACTTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCCCTCGTATGAAGATTGCATATATTGTTCCCCATGCACTTGAAT  200

seq1  CTTTACAAGCAGCTGACTTCTGATGAATTGCTTGATGATTGTTGTGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAGCAGCTGACTTCTGATGAATTGCTTGATGATTGTTGTGGAGG  250

seq1  GAAGCAGGTGTTCTCTATGTTTTTTACCTTCCAGTTTTGACAGGTCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGTGTTCTCTATGTTTTTTACCTTCCAGTTTTGACAGGTCCTAG  300

seq1  TTACCTGACCTTGAGCATAGATCATCTTGTGAGTTTTCTCTCTCCTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGACCTTGAGCATAGATCATCTTGTGAGTTTTCTCTCTCCTGTCT  350

seq1  TTGGAACAGTTATGCTTTGATTTCCAATTTGGAGGTAGGAGCTTCCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACAGTTATGCTTTGATTTCCAATTTGGAGGTAGGAGCTTCCTCCT  400

seq1  ATGTCTTAATGATAAAAGATGTTTTATTTGTATTTGGGTAGGATCCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTAATGATAAAAGATGTTTTATTTGTATTTGGGTAGGATCCTGGA  450

seq1  ACCAAGTTTTTGTTTTTGTTTTTCCCTGCATTCTGGATAAAGGGTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTTTTTGTTTTTGTTTTTCCCTGCATTCTGGATAAAGGGTTTTCT  500

seq1  TCTTAAATCTTGTTATTAGCTATGATGGCTCTTTGCCTTTATCTTAATCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATCTTGTTATTAGCTATGATGGCTCTTTGCCTTTATCTTAATCG  550

seq1  TCAGAGCCTACTTTTCTTCCCTGTGGCTTAAATAAAGCTTTTACTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCTACTTTTCTTCCCTGTGGCTTAAATAAAGCTTTTACTATTTT  600

seq1  ATCAGAGTCAGGAAATCATGTCTGTACATCAGCGGCCAGTTTACCTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTCAGGAAATCATGTCTGTACATCAGCGGCCAGTTTACCTTTTA  650

seq1  ATGCCTACAATATGCACTTCTCCAGAAGTAGGAATTTATTTCTCTTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTACAATATGCACTTCTCCAGAAGTAGGAATTTATTTCTCTTGTCT  700

seq1  ATGTTTTCAAGTCTTCCAGATTACTTATGAAGGAAAAAGAACTTGTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCAAGTCTTCCAGATTACTTATGAAGGAAAAAGAACTTGTGATT  750

seq1  ATCAGTATTCTTTGAGTCTTGGTCTTTAGCCGTTTGAAGCTGTCATTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATTCTTTGAGTCTTGGTCTTTAGCCGTTTGAAGCTGTCATTTAA  800

seq1  CTGAATCTTGCTATTGCACAGTTTGTTAA-TTGATATCTCTGTCTGGAGA  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGAATCTTGCTATTGCACAGTTTGTTAATTTGATATCTCTGTCTGGAGA  850

seq1  TGTAGC-TTCTTAGACAGAATGCTTACCTAGAATGTGTGAAGCCTTTTTT  898
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTTCTTAGACAGAATGCTTACCTAGAATGTGTGAAGCCTTTTTT  900

seq1  TCAGTCCCCAGAACCATATAAAATGGATGTGGTTGTGTATGCCTGTAATA  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAGTCCCCAGAACCATATAAAATGGATGTGGTTGTGTATGCCTGT-ATA  949

seq1  CCAGCAATGGACTTGAAGCTCAAGTATGAGAAGTCCAGCTCATCTTTGAA  998
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  CCAGC-ATGGACTTGAAGCTCAAGTATGAG-AGTCCAGCTCATCTTTGAA  997

seq1  TATGTAGCAAGTTTAAGGTCATCCTTGGATGCATGAGATGCTATCTCAAA  1048
      |||||||||||||||| ||||| | |||||||||||||||||||||||||
seq2  TATGTAGCAAGTTTAATGTCATTCCTGGATGCATGAGATGCTATCTCAAA  1047

seq1  AACAAACAACCTACATAATAAAATAATACAATCCCTTTACCTGTCTGTAT  1098
      ||||||||||||||||||| |||| |||||||||||||||||||||| ||
seq2  AACAAACAACCTACATAAT-AAATTATACAATCCCTTTACCTGTCTG-AT  1095

seq1  GGTACTACTTCCTTTTCCTGTTATTGCCAAAGATGGACCGGTTACACTTG  1148
      |||||||||||||||  ||| |||||||||| ||||||||| ||||||| 
seq2  GGTACTACTTCCTTTCTCTG-TATTGCCAAA-ATGGACCGG-TACACTTT  1142

seq1  GTGTT-CTTGGATTTAGATTGTTTGCCTGATAACTTCTTTTCTGATGGGC  1197
      | ||| ||||||||| || || ||| |||   |||||||||||||||| |
seq2  GGGTTCCTTGGATTT-GA-TGGTTGTCTG--TACTTCTTTTCTGATGGCC  1188

seq1  TCAA  1201
      ||||
seq2  TCAA  1192

seq1: chr16_55386414_55386950
seq2: B6Ng01-073F20.g_540_1059 (reverse)

seq1  AACTTATGGGACACAATGAAAGCATTTCTAAGAGGAAAACTCATAGCTCT  50
      |||||||||   ||| |  |||||||||||||||| |||||||||| |||
seq2  AACTTATGG---ACACTAGAAGCATTTCTAAGAGG-AAACTCATAG-TCT  45

seq1  GAGTGTCTCAAAAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGAC  100
      |   | |||    |||||| ||  ||||||||||||||||||||||||||
seq2  GGAGGCCTC----AAAAGAGACAGGAGAGAGCACACACTAGCAGCTTGAC  91

seq1  AACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACCCAAGAGGA  150
      |||||| ||||||||||| ||||||||| ||||||||||||||       
seq2  AACACA-CTAAAAGCTCTTGAACAAAAGAAAGCAAATTCACCC-------  133

seq1  GTAGAAGGCAGGAAATAATCAAACTCAGGGGCGAAATCAACCAAGTGGAA  200
        ||| |||| ||||||||||| ||||||||||| ||||||| | |||||
seq2  --AGATGGCA-GAAATAATCAAGCTCAGGGGCGAGATCAACCCATTGGAA  180

seq1  ACAAGAAGAACTATTCAAAGAATCAACCAAATGAGGAGCTGGTTCTTTGA  250
      ||||||||||||||||||||||  ||||||| ||||||||||||||||||
seq2  ACAAGAAGAACTATTCAAAGAAATAACCAAACGAGGAGCTGGTTCTTTGA  230

seq1  G-AAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGGCAC  299
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAAAATCAACAAGATAGATAAACCCTTAACCAGACTCACTAGAGGGCAC  280

seq1  AGGGACAGCATCCTAATTA--AAAAGTCAGAAATGAAAAGGGAGACATAA  347
      ||||||| |||||||||||  |||| ||||||||||||||||||||||||
seq2  AGGGACAACATCCTAATTAACAAAAATCAGAAATGAAAAGGGAGACATAA  330

seq1  CAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGG  380

seq1  CTATACTCAACAAAACTGGAGAACCTGGATGAAATGAACAAGTTTCTAGA  447
      ||||| ||||||||||||||  ||||||| ||||||  ||| ||||||||
seq2  CTATAGTCAACAAAACTGGAAGACCTGGACGAAATGCGCAAATTTCTAGA  430

seq1  CAGATACCAGGTACCAAAGTTAAACCAAGATCAGATTAGTGATCTAAACA  497
      |||||||||||||||||||||||| || |||||  |||  ||||||||||
seq2  CAGATACCAGGTACCAAAGTTAAATCAGGATCAAGTTAACGATCTAAACA  480

seq1  GTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAG  537
      |||| |||||||||||||||||||||||||||||||||||
seq2  GTCCCATATCCCCTAAAGAAATAGAAGCAGTCATTAATAG  520