BAC Information

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BAC

Clone NameB6Ng01-074G05
Chromosome15 (Build37)
Map Location 16,162,855 - 16,164,041
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040033, LOC100040046, EG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074G05.bB6Ng01-074G05.g
ACCDH891251DH891252
length1,2441,170
definitionDH891251|Mus musculus domesticus DNA, BAC clone: B6Ng01-074G05, 5' end.DH891252|Mus musculus domesticus DNA, BAC clone: B6Ng01-074G05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgtttagctctgtacctcatttttaatagggttatttgattc
tctggagtctaacttcttgagttctttgtatatattggatattaaccctc
tttcacatgtagggttggtaaagatcttttcccaatctgtcctattgaca
gtgtcctttgccttacacaagctttgctattttatgtggtcccatttgtc
aatgcttgatcttagagcataagctatgggtgctctatttctatgaaaag
aagttcaaggaatttcacatgtgcccatgtgctccaggctcttccccact
ttcttttttattcatttcagtgtatctgcttttatgtcaaggtccttatc
atacatgcttgtggattgacaggattaatatagtaaaaatggccaccttc
accaaagcaatatgcagattcaatgtaattctcatcaaaattccaactca
attcttcatagagttagatccattctcaaatttatctgaaataacaaaaa
aatccagactattgaaatctattatcaacaataaaagaacctctggtgta
accatcatcctggaccttagcctgtactaatgagcaatagtgataaaaac
tggatggtactggtacagagacaggcaggaaacatccatggaatagagtt
gaagaaatgaacacaaacacctatgatcacttgatctttgacaaaggagc
taaaactatccagtggaaaaaagacagcattttcaacaaatagtgctcat
tcaactggtggttagaatgcagaagaatgcaacttgatctttttttttat
ctctgtgtacaaagctcaagtccaagtggttcaaggacttccacataaaa
ccagtgttttatttatgtatcaactcaatcattaccttaggttccctttt
cattatcccacaaatgagcattttatgcccttagccccttgattattaga
aaagacagcaagtacacattttttctttttacaaaacaaatgtttcagag
atttgcctgcttttatagccacaaacaataaatttagttgggcaagaacc
tgccctggaaatgtcaatctgaaatctcataccttcttcctaaattcctt
tcttactgctggatcattatgcaatggtcggtattttacgtcggaatttc
cacatttccaatgaaccctaattgcagaatgcaaatatatctgacctagg
ttcaaggcttcacctaagcgtctaaggttatagaataccttgcc
gaattcttgagtcaaaataaatgtagggaaaatatgttgatgcaacagaa
gtgcaaccatagaactggaaatgagtatggggcaaaaggatgaatagaga
cagaaaaagaggaaaattcataatttatatgcatgtgagtaaccagcttc
tactcccaaacatgaacacttctaaagagcatagctatgtctttgaaaaa
aacgaacattttatttttaaataaaaacatctttaaaatggggcagggga
tgaaattatgttaaacagacaaagaagacaggaataatcccatgtaccgg
gaagactagcattctacagcctgaggttatttggtttttcgccaagatga
gacacacaagaaaaatctatcactaaaaagcatagtccagacaaatgtac
atctttgtttctggctttgtttaaggctattggatcatttggcgagttga
gctctcatacacccacaaatctcctttatttgtcactcctggaattaggt
aggatatggaatgtattaaatgttttgggaaaataattatcctataaact
ttttcctgtttccttgaatatttgtccagaaagagcttaataatatgctt
accttctttgatctgctttttaaaatcatgttaaatatgctaagcaaagc
aaaagccaatatttggagtataacagttctttcatcaaaaattaaaatta
tttattgtggaaaagacacttctgtctgcgaaaagggtgagctacaatat
gaaagatatactttcaaatagtgtatttgatacagctatgtttcaagaac
acatatgtactacatcgtagaagctaacttataatcatatgcttgaacaa
ccatgggttaatatttcataagataagataaatggttgataagtcagcat
tcaaagtaatccaacatcacgtaggaacaccataaataatatctcttgct
agtgtgagtgatttttaagttgtggacagaaaatttcatttgacactgac
atgctggggaggggttaaaacaatttagactcttgagaatcgaagacagc
tataaaaattgttaaacacactgaaatgtaccaagttttataagcctgta
ctgtagtgtaacaggcagtaaaatgatcttgcacaataacctgtagctaa
tgtaattggccaaatgacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16162855_16164041
seq2: B6Ng01-074G05.g_67_1236

seq1  GAATTCTTGAGTCAAAATAAATGTAGGGAAAATATGTTGATGCAACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGTCAAAATAAATGTAGGGAAAATATGTTGATGCAACAGAA  50

seq1  GTGCAACCATAGAACTGGAAATGAGTATGGGGCAAAAGGATGAATAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACCATAGAACTGGAAATGAGTATGGGGCAAAAGGATGAATAGAGA  100

seq1  CAGAAAAAGAGGAAAATTCATAATTTATATGCATGTGAGTAACCAGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGAGGAAAATTCATAATTTATATGCATGTGAGTAACCAGCTTC  150

seq1  TACTCCCAAACATGAACACTTCTAAAGAGCATAGCTATGTCTTTGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCAAACATGAACACTTCTAAAGAGCATAGCTATGTCTTTGAAAAA  200

seq1  AACGAACATTTTATTTTTAAATAAAAACATCTTTAAAATGGGGCAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAACATTTTATTTTTAAATAAAAACATCTTTAAAATGGGGCAGGGGA  250

seq1  TGAAATTATGTTAAACAGACAAAGAAGACAGGAATAATCCCATGTACCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTATGTTAAACAGACAAAGAAGACAGGAATAATCCCATGTACCGG  300

seq1  GAAGACTAGCATTCTACAGCCTGAGGTTATTTGGTTTTTCGCCAAGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTAGCATTCTACAGCCTGAGGTTATTTGGTTTTTCGCCAAGATGA  350

seq1  GACACACAAGAAAAATCTATCACTAAAAAGCATAGTCCAGACAAATGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAAGAAAAATCTATCACTAAAAAGCATAGTCCAGACAAATGTAC  400

seq1  ATCTTTGTTTCTGGCTTTGTTTAAGGCTATTGGATCATTTGGCGAGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTTTCTGGCTTTGTTTAAGGCTATTGGATCATTTGGCGAGTTGA  450

seq1  GCTCTCATACACCCACAAATCTCCTTTATTTGTCACTCCTGGAATTAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCATACACCCACAAATCTCCTTTATTTGTCACTCCTGGAATTAGGT  500

seq1  AGGATATGGAATGTATTAAATGTTTTGGGAAAATAATTATCCTATAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGGAATGTATTAAATGTTTTGGGAAAATAATTATCCTATAAACT  550

seq1  TTTTCCTGTTTCCTTGAATATTTGTCCAGAAAGAGCTTAATAATATGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGTTTCCTTGAATATTTGTCCAGAAAGAGCTTAATAATATGCTT  600

seq1  ACCTTCTTTGATCTGCTTTTTAAAATCATGTTAAATATGCTAAGCAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTTGATCTGCTTTTTAAAATCATGTTAAATATGCTAAGCAAAGC  650

seq1  AAAAGCCAATATTTGGAGTATAACAGTTCTTTCATCAAAAATTAAAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAATATTTGGAGTATAACAGTTCTTTCATCAAAAATTAAAATTA  700

seq1  TTTATTGTGGAAAAGACACTTCTGTCTGCGAAAAGGGTGAGCTACAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTGGAAAAGACACTTCTGTCTGCGAAAAGGGTGAGCTACAATAT  750

seq1  GAAAGATATACTTTCAAATAGTGTATTTGATACAGCTATGTTTCAAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATATACTTTCAAATAGTGTATTTGATACAGCTATGTTTCAAGAAC  800

seq1  ACATATGTACTACATCGTAGAAGCTAACTTATAATCATATGCTTGAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTACTACATCGTAGAAGCTAACTTATAATCATATGCTTGAACAA  850

seq1  CCATGGGTTAATATTTCATAAGATAAGATAAATGGTTGATAAGTCAGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTTAATATTTCATAAGATAAGATAAATGGTTGATAAGTCAGCAT  900

seq1  TCAAAGTAATCCAACATCACGTAGGAACACCATAAATAATATCTCTTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTAATCCAACATCACGTAGGAACACCATAAATAATATCTCTTGCT  950

seq1  AGTTGTGAGTTGATTTTTTTAAGTTGTGGACAGAAAATATCAATTTTGAC  1000
      || |||||| |||  ||||||||||||||||||||||| |||  ||||||
seq2  AG-TGTGAG-TGA--TTTTTAAGTTGTGGACAGAAAATTTCA--TTTGAC  994

seq1  ACTGACATGCTGGGGAGAGTGTAAAACAATTTAGACTCTTGAGAATCGAA  1050
      ||||||||||||||||| |  |||||||||||||||||||||||||||||
seq2  ACTGACATGCTGGGGAGGGGTTAAAACAATTTAGACTCTTGAGAATCGAA  1044

seq1  GACAAAGCTAT-AAAATTGTATAAACACACTGGAATATGTTACCAAAGTT  1099
      |||  |||||| |||||||| ||||||||||| |||    |||| |||||
seq2  GAC--AGCTATAAAAATTGT-TAAACACACTGAAAT---GTACC-AAGTT  1087

seq1  TTATAAGGCTGTACTGTAAGTGTAAACAGGTCAGTAGAAATGACTTTGCA  1149
      ||||||| ||||||||| ||||| |||||| ||||| ||||||  |||||
seq2  TTATAAGCCTGTACTGT-AGTGT-AACAGG-CAGTA-AAATGATCTTGCA  1133

seq1  CAATAACGTGTAGCTTAATGATATTGGCCAAATGACCA  1187
      ||||||| |||||| |||||  ||||||||||||||||
seq2  CAATAACCTGTAGC-TAATGTAATTGGCCAAATGACCA  1170