BAC Information

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BAC

Clone NameB6Ng01-077C15
Chromosome15 (Build37)
Map Location 13,146,390 - 13,324,731
singlet/doubletdoublet
Overlap geneLOC100039907
Upstream geneMtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
Downstream geneLOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077C15.bB6Ng01-077C15.g
ACCDH893213DH893214
length1,1161,050
definitionDH893213|Mus musculus domesticus DNA, BAC clone: B6Ng01-077C15, 5' end.DH893214|Mus musculus domesticus DNA, BAC clone: B6Ng01-077C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,323,603 - 13,324,731)(13,146,390 - 13,147,448)
sequence
gaattcaacatctcccctcaaatagagatacttttcagtgaggaaacttt
gaaagcaccatttaaacaatcagtggatattaatattgctagtgataagt
ccatgctgatagaagctgataacatgaaacttctagaaatgcatgctgac
aagactcttcacatcctctgagaatcccacagtcctaagctaatcatgaa
aaacctcttattcattgaagtggggttcattctacaaaacacctgatcac
tattcttccaaactagacttgttatgaaaaacaaggaaaacgtaagaatt
gacctcagattaggggagacaggaagagtaggaacgatatggaagcagac
agagttggatgccagggttcagctcagctcaccttctgtttactcagtag
ggagtaggagcccctgccaatgggactatgtacccacattcaggttgggt
catcctgcctcagttgaacctctttggaaacctgcagggtcctcatagaa
gccctcgtatgtgtgtctactatgtgagttcaaatcccatcaagttgaca
acaaaagttaacctctgtaaagccttttcctctgtcacttatttttcccc
aacaataagaaaggtagctaatgcataatggaaactctgtaattcatcaa
tattactgatgtcacatgcactgaaaacaggctgtctagtattacaaaaa
tactgaaaacgtggatctcgaataatattcaaaatgtaggatgttaaaac
taaaaatctacatataaagaattttagtggatctaaattaagatagagag
gtgggggaactgggatggagacatgacatccatttatctaaattcatctt
agagatgttattatcaaggataaactccctgcacaaactgccctctctct
ccagatgtcctgagctgcttgcatgttcttccactctacatttcagccct
tccattggcacagagcaggaagcactcccatcttggccagttgaactgaa
actatgaggagaccttgattaaaccttaagcaccaattttgaagatacct
attatcagtccactatttttcctgtatcaagtcccttggtcttgagccgt
ttttttaataaagcat
gaattcttagaaaagacatgggtttttttgcattggccaaaaatgaaagt
agattttttttttcgttcttcttcttcttgcaatggatctggaaagtagt
ttcccaactaacttaataaagtttgagtactacaaaaatttcttgtgttt
gaaaaacaacagaacacttgggaggttaatacacaagccattgagtgaag
cctttatttagaaaagccacatttcttttgttaagcgagataagagaaag
gcccggtgaagtgtgctgtgcaaatagcctagccatgtgcatgttggcgt
gcgtgttttctcagtcccgagggagatgggaagagataaaatcaggtcca
gttgtgctgcttttgcagacttaatggagagggctagaacagctaagagc
gaagaaaagcgagcgaacaggtctgaaggtgagagaagggagggctggct
gaatgtgccgtcctagaagagacggggcagactagaaaaagcgatagaga
gggcagatggagtctcttgtgataaagttttggaaagaatatttatgcta
cacatttaagagactataataagagatttatggtgaaagaatctgatagt
cactgtgtcacatgatctggtgatgccaacacagagctacagatgtcttc
cttggtgtgactttcagaaaacaaagtgtcatgctgtctccttgtccaag
tccatggctcttccttccatgtccctttttgtgaagactggcaggaacac
agcaggcttgtgatgtgctgtttgcttacttcagaagagttagggtgtga
tttttttttccccccaccaactggtagacctcaaatgcttgcccagtgta
gttcaaattctctgtggagttgttgctgggcttcaaggctcatgaatgtt
ctaaatggcattgaacatgaactgctggtttcacgttgcttttcaggatc
cttaactgtggtctgtcaagcatttctctggtgtcatcactgcactttaa
ttcaggaaaccattcaacacagtgaattaattaataatggattggatact

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13323603_13324731
seq2: B6Ng01-077C15.b_49_1164 (reverse)

seq1  ATGCTTTATATTAAAAAAAAAACAGCTCAAGGGACAAAGGGACTATGATA  50
      |||||||||      |||||||| ||||||  ||| |||||||| |||||
seq2  ATGCTTTAT-----TAAAAAAACGGCTCAA--GACCAAGGGACT-TGATA  42

seq1  CAGGAAAAATAGTGTGAAATGATAATAAGTTATCTCTAAAATTGGTGCTT  100
      |||||||||||  ||| | ||||||| || |||||  |||||||||||||
seq2  CAGGAAAAATA--GTGGACTGATAAT-AGGTATCTTCAAAATTGGTGCTT  89

seq1  AGTGTTTTATCAAGGTCTCATCATAGTTTCAGTTCAACTGGCCAAGATGG  150
      |  |||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGGTTTAATCAAGGTCTCCTCATAGTTTCAGTTCAACTGGCCAAGATGG  139

seq1  GAGTGCTTCCTGCTCTGTGCCAATGGAAGGGCCTGAAATGTAGAGTTGGA  200
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  GAGTGCTTCCTGCTCTGTGCCAATGGAAGGG-CTGAAATGTAGAG-TGGA  187

seq1  AGAACATGCAAGCAGCTCAGGACATCTGGAGAGAGAGGGCAGTTTGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGCAAGCAGCTCAGGACATCTGGAGAGAGAGGGCAGTTTGTGCA  237

seq1  GGGAGTTTATCCTTGATAATAACATCTCTAAGATGAATTTAGATAAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTATCCTTGATAATAACATCTCTAAGATGAATTTAGATAAATGG  287

seq1  ATGTCATGTCTCCATCCCAGTTCCCCCACCTCTCTATCTTAATTTAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGTCTCCATCCCAGTTCCCCCACCTCTCTATCTTAATTTAGATC  337

seq1  CACTAAAATTCTTTATATGTAGATTTTTAGTTTTAACATCCTACATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAATTCTTTATATGTAGATTTTTAGTTTTAACATCCTACATTTTG  387

seq1  AATATTATTCGAGATCCACGTTTTCAGTATTTTTGTAATACTAGACAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTCGAGATCCACGTTTTCAGTATTTTTGTAATACTAGACAGCC  437

seq1  TGTTTTCAGTGCATGTGACATCAGTAATATTGATGAATTACAGAGTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGTGCATGTGACATCAGTAATATTGATGAATTACAGAGTTTCC  487

seq1  ATTATGCATTAGCTACCTTTCTTATTGTTGGGGAAAAATAAGTGACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCATTAGCTACCTTTCTTATTGTTGGGGAAAAATAAGTGACAGAG  537

seq1  GAAAAGGCTTTACAGAGGTTAACTTTTGTTGTCAACTTGATGGGATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGCTTTACAGAGGTTAACTTTTGTTGTCAACTTGATGGGATTTGA  587

seq1  ACTCACATAGTAGACACACATACGAGGGCTTCTATGAGGACCCTGCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATAGTAGACACACATACGAGGGCTTCTATGAGGACCCTGCAGGT  637

seq1  TTCCAAAGAGGTTCAACTGAGGCAGGATGACCCAACCTGAATGTGGGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGAGGTTCAACTGAGGCAGGATGACCCAACCTGAATGTGGGTAC  687

seq1  ATAGTCCCATTGGCAGGGGCTCCTACTCCCTACTGAGTAAACAGAAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCCATTGGCAGGGGCTCCTACTCCCTACTGAGTAAACAGAAGGTG  737

seq1  AGCTGAGCTGAACCCTGGCATCCAACTCTGTCTGCTTCCATATCGTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGCTGAACCCTGGCATCCAACTCTGTCTGCTTCCATATCGTTCCT  787

seq1  ACTCTTCCTGTCTCCCCTAATCTGAGGTCAATTCTTACGTTTTCCTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCTGTCTCCCCTAATCTGAGGTCAATTCTTACGTTTTCCTTGTT  837

seq1  TTTCATAACAAGTCTAGTTTGGAAGAATAGTGATCAGGTGTTTTGTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAACAAGTCTAGTTTGGAAGAATAGTGATCAGGTGTTTTGTAGAA  887

seq1  TGAACCCCACTTCAATGAATAAGAGGTTTTTCATGATTAGCTTAGGACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCCACTTCAATGAATAAGAGGTTTTTCATGATTAGCTTAGGACTG  937

seq1  TGGGATTCTCAGAGGATGTGAAGAGTCTTGTCAGCATGCATTTCTAGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCTCAGAGGATGTGAAGAGTCTTGTCAGCATGCATTTCTAGAAG  987

seq1  TTTCATGTTATCAGCTTCTATCAGCATGGACTTATCACTAGCAATATTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTATCAGCTTCTATCAGCATGGACTTATCACTAGCAATATTAA  1037

seq1  TATCCACTGATTGTTTAAATGGTGCTTTCAAAGTTTCCTCACTGAAAAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACTGATTGTTTAAATGGTGCTTTCAAAGTTTCCTCACTGAAAAGT  1087

seq1  ATCTCTATTTGAGGGGAGATGTTGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  ATCTCTATTTGAGGGGAGATGTTGAATTC  1116

seq1: chr15_13146390_13147448
seq2: B6Ng01-077C15.g_70_1119

seq1  GAATTCTTAGAAAAGACATGGGTTTTTTTGCATTGGCCAAAAATGAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAAAAGACATGGGTTTTTTTGCATTGGCCAAAAATGAAAGT  50

seq1  AGATTTTTTTTTTCGTTCTTCTTCTTCTTGCAATGGATCTGGAAAGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTTTTTCGTTCTTCTTCTTCTTGCAATGGATCTGGAAAGTAGT  100

seq1  TTCCCAACTAACTTAATAAAGTTTGAGTACTACAAAAATTTCTTGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACTAACTTAATAAAGTTTGAGTACTACAAAAATTTCTTGTGTTT  150

seq1  GAAAAACAACAGAACACTTGGGAGGTTAATACACAAGCCATTGAGTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAACAGAACACTTGGGAGGTTAATACACAAGCCATTGAGTGAAG  200

seq1  CCTTTATTTAGAAAAGCCACATTTCTTTTGTTAAGCGAGATAAGAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTAGAAAAGCCACATTTCTTTTGTTAAGCGAGATAAGAGAAAG  250

seq1  GCCCGGTGAAGTGTGCTGTGCAAATAGCCTAGCCATGTGCATGTTGGCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGTGAAGTGTGCTGTGCAAATAGCCTAGCCATGTGCATGTTGGCGT  300

seq1  GCGTGTTTTCTCAGTCCCGAGGGAGATGGGAAGAGATAAAATCAGGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTTTTCTCAGTCCCGAGGGAGATGGGAAGAGATAAAATCAGGTCCA  350

seq1  GTTGTGCTGCTTTTGCAGACTTAATGGAGAGGGCTAGAACAGCTAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCTGCTTTTGCAGACTTAATGGAGAGGGCTAGAACAGCTAAGAGC  400

seq1  GAAGAAAAGCGAGCGAACAGGTCTGAAGGTGAGAGAAGGGAGGGCTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGCGAGCGAACAGGTCTGAAGGTGAGAGAAGGGAGGGCTGGCT  450

seq1  GAATGTGCCGTCCTAGAAGAGACGGGGCAGACTAGAAAAAGCGATAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGCCGTCCTAGAAGAGACGGGGCAGACTAGAAAAAGCGATAGAGA  500

seq1  GGGCAGATGGAGTCTCTTGTGATAAAGTTTTGGAAAGAATATTTATGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGATGGAGTCTCTTGTGATAAAGTTTTGGAAAGAATATTTATGCTA  550

seq1  CACATTTAAGAGACTATAATAAGAGATTTATGGTGAAAGAATCTGATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTAAGAGACTATAATAAGAGATTTATGGTGAAAGAATCTGATAGT  600

seq1  CACTGTGTCACATGATCTGGTGATGCCAACACAGAGCTACAGATGTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTCACATGATCTGGTGATGCCAACACAGAGCTACAGATGTCTTC  650

seq1  CTTGGTGTGACTTTCAGAAAACAAAGTGTCATGCTGTCTCCTTGTCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGTGACTTTCAGAAAACAAAGTGTCATGCTGTCTCCTTGTCCAAG  700

seq1  TCCATGGCTCTTCC-TCCATGTCCC-TTTTGTGAAGACTGGCAGGAACAC  748
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  TCCATGGCTCTTCCTTCCATGTCCCTTTTTGTGAAGACTGGCAGGAACAC  750

seq1  AGCAGGCTTGTGATGTGCTG-TTGCTTACTTCAGAAGAGTTATGGTGTGA  797
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  AGCAGGCTTGTGATGTGCTGTTTGCTTACTTCAGAAGAGTTAGGGTGTGA  800

seq1  TTTTTTTTTCCCCCCACCAACTGGTAGACCTCAAAATGCTTGCCCAGTGT  847
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTTTTTTCCCCCCACCAACTGGTAGACCTC-AAATGCTTGCCCAGTGT  849

seq1  AGTTCAAA-TCTCTGTGGAGATTGTTGCTGGGCTTCAAGGCTCAGGAATG  896
      |||||||| ||||||||||| ||||||||||||||||||||||| |||||
seq2  AGTTCAAATTCTCTGTGGAG-TTGTTGCTGGGCTTCAAGGCTCATGAATG  898

seq1  TTC-AAATGGCATTGAACATGAACCGCTGGCTTTCACGTTGCTTTCCAGG  945
      ||| |||||||||||||||||||| ||||| |||||||||||||| ||||
seq2  TTCTAAATGGCATTGAACATGAACTGCTGG-TTTCACGTTGCTTTTCAGG  947

seq1  ATCCATAACTGTGGCTCTGTCAAGCCATTTCTCTTGGTGTCATACACCTG  995
      |||| ||||||||| ||||||||| |||||||| ||||||||| || |||
seq2  ATCCTTAACTGTGG-TCTGTCAAG-CATTTCTC-TGGTGTCAT-CA-CTG  992

seq1  CACATTTAAATTCCAGGAAACCCATTCAACACAGTGAAATTAAGTAATAA  1045
      ||| |||||  | ||||||| ||||||||||||||| |||||| ||||||
seq2  CAC-TTTAA--TTCAGGAAA-CCATTCAACACAGTG-AATTAATTAATAA  1037

seq1  TTGAAGTGGATACT  1059
       || | ||||||||
seq2  -TGGATTGGATACT  1050