BAC Information

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BAC

Clone NameB6Ng01-078E07
Chromosome15 (Build37)
Map Location 102,378,853 - 102,561,744
singlet/doubletdoublet
Overlap geneAtf7, LOC100043600, Atp5g2, Calcoco1
Upstream geneKrt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff
Downstream geneLOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078E07.bB6Ng01-078E07.g
ACCDH894011DH894012
length8701,142
definitionDH894011|Mus musculus domesticus DNA, BAC clone: B6Ng01-078E07, 5' end.DH894012|Mus musculus domesticus DNA, BAC clone: B6Ng01-078E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,378,853 - 102,379,666)(102,560,595 - 102,561,744)
sequence
gaattcaatggctatgagttaactctattaggaatttgggatgattaaac
atctctaccacaaataaaatgttttattttaggaaataatttcaacaact
cattttcttaggtacgtaagaataaattcccggagccagcttcattatca
atcccagaactcaggaagcaaaagcaggatgatggttgggcagtggtggc
gcaccccagttccaggacagccaggactacacagagaaaccctgtctgga
aaaaccaaaactaaaaataataataataataataaaaagcaggatgatga
gaacttgaggccagctgtactggctggttttgtgtgtcaacttgacacag
gctggtgttatcacagagaaaggagcttcagttggggaagtacctccatg
agatccagctgtggggcattttctcaattagtgatcaagggggaaattag
tatccttgtgggtgggaccatctctgggctggcagtcttgggttctataa
gagagcaggctgagctgggcttggtggtgcacgcctttaataccagcact
cgggaggcagaggcaggcggatttctgagttcgagtccagcctggtctat
aaagtgagtcccaggacagccagggctatacagagaaactctgcctcaaa
aaaaagagagagagagcgagcaggctgagcaagccaggggaagcaagcca
gtaagtaacatctctccatggcctctgtatcagctcctgctttctgacct
gcttgaattccagtcctgacttccttcagtgatgaacagcagtatggaag
tgtaagctgaataacccctttcctccccaacttgcttcttggtcatgatg
tttgtgcaggatagaaaccc
gaattcaataaatacaaatgaattgtgtgaatgaacagatgacttgatta
tcaaagagctacatcttactccctgttgctaaaagctggctgaggtgatt
gctattatttgtttcatggggtctcttgctcaatagctgaggctggcctt
gaactcctggtattcctgcctcctgagactacaggtgtgcatcaccacaa
ctagcaacgtctaacatttgagtggaagttgtccccaaagtgctcacagt
aggcagccaggcccccaggaggaggccatgtgtaaactctagaaggtggg
accactagcaggtccttaggtcctggggttcctgccttgggaagggatta
aggtagttctcatgggactcaggtcagtctggcagcccaaggatgcttat
tccatggcgtcctgttttatgcggtgacttctctctctccctccagcttt
gactgtcgctcagtgccatctgagatctaccagtaggcctttaagaggag
gaaccaaaggggctacccaatcttctgcctctgaaactgtaagccaagta
aacccattccttcctgagaactcacctttgggttagatgaggacagagat
gggagaaccgatgttaatagcagtcctggtctgtggagggaggcagagct
gtggacccagtcaagccaatggtgaagagagctgtgatgaccaatcacct
gggcagggtctagattagctttagcctctgggcacgcctgtgaaggacaa
cctgcattaggtttatttgaagtggaaagagtctcagtacctacgggtag
tacaattctacaggctggagcgcctgggctgaataaaaaggagaaagctg
gactggagtgtagctaattagtatgagcccttgggcttgattcccagtat
gagaaagagagagagagagagagagagagagagagagagagagagagcaa
gagctctcaagcatcaccaccctctctggttctgatttcagaatagctta
ctacccctaactaccaacccactccatgatgaactccctaagaatataaa
accaaaaatgttgttccttaagtcacttttgagggccaattttatcccaa
ctaatagaaaatatataatctagggaccaatgaatgtaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102378853_102379666
seq2: B6Ng01-078E07.b_46_859

seq1  GAATTCAATGGCTATGAGTTAACTCTATTAGGAATTTGGGATGATTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCTATGAGTTAACTCTATTAGGAATTTGGGATGATTAAAC  50

seq1  ATCTCTACCACAAATAAAATGTTTTATTTTAGGAAATAATTTCAACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTACCACAAATAAAATGTTTTATTTTAGGAAATAATTTCAACAACT  100

seq1  CATTTTCTTAGGTACGTAAGAATAAATTCCCGGAGCCAGCTTCATTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTAGGTACGTAAGAATAAATTCCCGGAGCCAGCTTCATTATCA  150

seq1  ATCCCAGAACTCAGGAAGCAAAAGCAGGATGATGGTTGGGCAGTGGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGAACTCAGGAAGCAAAAGCAGGATGATGGTTGGGCAGTGGTGGC  200

seq1  GCACCCCAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTGGA  250

seq1  AAAACCAAAACTAAAAATAATAATAATAATAATAAAAAGCAGGATGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAACTAAAAATAATAATAATAATAATAAAAAGCAGGATGATGA  300

seq1  GAACTTGAGGCCAGCTGTACTGGCTGGTTTTGTGTGTCAACTTGACACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGAGGCCAGCTGTACTGGCTGGTTTTGTGTGTCAACTTGACACAG  350

seq1  GCTGGTGTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAGTACCTCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAGTACCTCCATG  400

seq1  AGATCCAGCTGTGGGGCATTTTCTCAATTAGTGATCAAGGGGGAAATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGCTGTGGGGCATTTTCTCAATTAGTGATCAAGGGGGAAATTAG  450

seq1  TATCCTTGTGGGTGGGACCATCTCTGGGCTGGCAGTCTTGGGTTCTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTGTGGGTGGGACCATCTCTGGGCTGGCAGTCTTGGGTTCTATAA  500

seq1  GAGAGCAGGCTGAGCTGGGCTTGGTGGTGCACGCCTTTAATACCAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGCTGAGCTGGGCTTGGTGGTGCACGCCTTTAATACCAGCACT  550

seq1  CGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGTCCAGCCTGGTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGTCCAGCCTGGTCTAT  600

seq1  AAAGTGAGTCCCAGGACAGCCAGGGCTATACAGAGAAACTCTGCCTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTCCCAGGACAGCCAGGGCTATACAGAGAAACTCTGCCTCAAA  650

seq1  AAAAAGAGAGAGAGAGCGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGAGAGAGAGCGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCA  700

seq1  GTAAGTAACATCTCTCCATGGCCTCTGTATCAGCTCCTGCTTTCTGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAACATCTCTCCATGGCCTCTGTATCAGCTCCTGCTTTCTGACCT  750

seq1  GCTTGAATTCCAGTCCTGACTTCCTTCAGTGATGAACAGCAGTATGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAATTCCAGTCCTGACTTCCTTCAGTGATGAACAGCAGTATGGAAG  800

seq1  TGTAAGCTGAATAA  814
      ||||||||||||||
seq2  TGTAAGCTGAATAA  814

seq1: chr15_102560595_102561744
seq2: B6Ng01-078E07.g_71_1212 (reverse)

seq1  GCTTT-CATTCATTGGT-CCTAGTATTATTTACTTTTCTTATTGTTGTGA  48
      ||||| ||||||||||| ||||| ||||| || ||||||  | |||| ||
seq2  GCTTTACATTCATTGGTCCCTAG-ATTATATA-TTTTCTATTAGTTGGGA  48

seq1  TTAAAATGCCCCTACAAAAGTGACTTAAGGAACAACATTTTTTGGTTTAT  98
      | ||| || |||| |||||||||||||||||||||||||||| | |||||
seq2  TAAAATTGGCCCT-CAAAAGTGACTTAAGGAACAACATTTTTGGTTTTAT  97

seq1  AATTCTAGGGGATGTTCATCATGGAGTGGGTTGGTAGGTAGGGGGTAGGT  148
       |||||  |||| |||||||||||||||||||||||| || |||||| ||
seq2  -ATTCTTAGGGA-GTTCATCATGGAGTGGGTTGGTAGTTA-GGGGTA-GT  143

seq1  AAGGCTATTCTGAAATCAGGAACCAGAGAGGGGTGGTGAATGCTTGAGAG  198
      || ||||||||||||||| |||||||||| |||||||| |||||||||||
seq2  AA-GCTATTCTGAAATCA-GAACCAGAGA-GGGTGGTG-ATGCTTGAGAG  189

seq1  CTCTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT  239

seq1  CTCATACTGGGAATCAAGCCCAAGGGCTCATACCTAATTAGCTACACTCC  298
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCATACTGGGAATCAAGCCCAAGGGCTCATA-CTAATTAGCTACACTCC  288

seq1  AGTCCAGCTTTCTCCTTTTTATTCAGCCCAGGCGCTCCAGCCTGTAGAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCTTTCTCCTTTTTATTCAGCCCAGGCGCTCCAGCCTGTAGAAT  338

seq1  TGTACTACCCGTAGGTACTGAGACTCTTTCCACTTC-AATTAACCTAATG  397
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  TGTACTACCCGTAGGTACTGAGACTCTTTCCACTTCAAATAAACCTAATG  388

seq1  CAGGTTGTCCTTCACAGGCGTGCCCAGAGGCT-AAGCTAATCTAGACCCT  446
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGGTTGTCCTTCACAGGCGTGCCCAGAGGCTAAAGCTAATCTAGACCCT  438

seq1  GCCCAGGTGATTGGTCATCACAGCTCTCTTCACCATTGGCTTGACTGGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTGATTGGTCATCACAGCTCTCTTCACCATTGGCTTGACTGGGT  488

seq1  CCACAGCTCTGCCTCCCTCCACAGACCAGGACTGCTATTAACATCGGTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTCTGCCTCCCTCCACAGACCAGGACTGCTATTAACATCGGTTC  538

seq1  TCCCATCTCTGTCCTCATCTAACCCAAAGGTGAGTTCTCAGGAAGGAATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCTCTGTCCTCATCTAACCCAAAGGTGAGTTCTCAGGAAGGAATG  588

seq1  GGTTTACTTGGCTTACAGTTTCAGAGGCAGAAGATTGGGTAGCCCCTTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACTTGGCTTACAGTTTCAGAGGCAGAAGATTGGGTAGCCCCTTTG  638

seq1  GTTCCTCCTCTTAAAGGCCTACTGGTAGATCTCAGATGGCACTGAGCGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCTCTTAAAGGCCTACTGGTAGATCTCAGATGGCACTGAGCGAC  688

seq1  AGTCAAAGCTGGAGGGAGAGAGAGAAGTCACCGCATAAAACAGGACGCCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGCTGGAGGGAGAGAGAGAAGTCACCGCATAAAACAGGACGCCA  738

seq1  TGGAATAAGCATCCTTGGGCTGCCAGACTGACCTGAGTCCCATGAGAACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAAGCATCCTTGGGCTGCCAGACTGACCTGAGTCCCATGAGAACT  788

seq1  ACCTTAATCCCTTCCCAAGGCAGGAACCCCAGGACCTAAGGACCTGCTAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAATCCCTTCCCAAGGCAGGAACCCCAGGACCTAAGGACCTGCTAG  838

seq1  TGGTCCCACCTTCTAGAGTTTACACATGGCCTCCTCCTGGGGGCCTGGCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCACCTTCTAGAGTTTACACATGGCCTCCTCCTGGGGGCCTGGCT  888

seq1  GCCTACTGTGAGCACTTTGGGGACAACTTCCACTCAAATGTTAGACGTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTGTGAGCACTTTGGGGACAACTTCCACTCAAATGTTAGACGTTG  938

seq1  CTAGTTGTGGTGATGCACACCTGTAGTCTCAGGAGGCAGGAATACCAGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGTGGTGATGCACACCTGTAGTCTCAGGAGGCAGGAATACCAGGA  988

seq1  GTTCAAGGCCAGCCTCAGCTATTGAGCAAGAGACCCCATGAAACAAATAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGCCAGCCTCAGCTATTGAGCAAGAGACCCCATGAAACAAATAA  1038

seq1  TAGCAATCACCTCAGCCAGCTTTTAGCAACAGGGAGTAAGATGTAGCTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATCACCTCAGCCAGCTTTTAGCAACAGGGAGTAAGATGTAGCTCT  1088

seq1  TTGATAATCAAGTCATCTGTTCATTCACACAATTCATTTGTATTTATTGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATCAAGTCATCTGTTCATTCACACAATTCATTTGTATTTATTGA  1138

seq1  ATTC  1150
      ||||
seq2  ATTC  1142