BAC Information

Click to search

BAC

Clone NameB6Ng01-079I15
Chromosome15 (Build37)
Map Location 73,838,050 - 73,839,133
singlet/doubletsinglet
Overlap geneLOC100040966
Upstream gene1810044A24Rik, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276
Downstream geneEG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079I15.bB6Ng01-079I15.g
ACCDH894919DH894920
length1,2371,065
definitionDH894919|Mus musculus domesticus DNA, BAC clone: B6Ng01-079I15, 5' end.DH894920|Mus musculus domesticus DNA, BAC clone: B6Ng01-079I15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttcgcctcggacgtgtcactccttgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacaagtagtcataagata
cccttggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacatctccccc
tatccttttaataagagcaaataggccacccatattaatgagagtggaga
tagaggtcaaatccccagtgtgtaggtaaaggagccatgtacaggattag
ttcttaggctcacaggcttttacccagagcaaccctgacctgctcccgtg
tcgttttgcctgggggaagggaactaggacactgaaccttcatgaaagat
gacatgtctccctagaataggctcatatatgccgcagagcctttccattg
cagtgcttagccgtgcaactctctcgggctgctgaagcacactcactcca
tcccgtgcaatgagtctagcctcgtgagatgtaagagctgagtggccagc
gacctattgcctaagcatagatatatcaggggaagctccatgttctagtc
ctgcaagcgcctgggcaataaccaccttgtctctcctagtttgggcctta
agcttacagaccaatcaaagaagcaacactaatccacagcaaagtgtatc
tccaaataatattaatcccacccattttttaaagaaagaaaatgctgagg
agatccaattgggtaatcctttggtcagggacaggtccaagcgcgtggag
ttgacctgaagtctcaattcccgaaggatctgttcaaattcagccatcca
attctgtaacatatactgaaaagactttttgacaaattagctgccctagt
aaatttaacatactgaatggaaataacacacaattccggaaacttttgtt
cacatcccagctgagtattgtcataatacatctagtgtatctggacagat
ctttgagtgatacagcatgagacctctctgtttcttgacattagctgagc
tgtttatctatgactgtagtcactgagctgacaatgttatgtgtcagtcg
ttgacgtcagaacgagcaagctgttctgatcagctatccaagcttctagg
tatggtaaagactagaatctaggaacataaactccgcatggagggaagtc
agtatcccacgggtctctataatggagccctggactt
gaattcaactcacagcagtgttgtgtcaatggaaagaatcttctagagat
caagacacttttcacagggcccaccatactcagggtatcctgtctgttct
catggaagatagtgtggactatgccaaggcctgcttggctagaaaaagcc
gggaggcaggtgacaggctcatcagacactcaagaaaggataaagagggg
ctgacattcagggatcagtaaggggaggtggggataccagtggccatggt
ctctgagaagatgactcctgttctgtgacatttaacaagaatacacaggc
taatgtggggtgacaacatcccacaggccacagacagctctgggataggg
ttgtaggagaggaaaattcaaggtaactggagccttgtaacagtcacagt
tgagatcaaggcctaagttcagaattcactctggaagctatggctgtgac
tctgtcctcaagtgagataggtcttgctatagctttataggagggcttta
cacagagtgtggtcatctgtctctgggtgcccctgaagaacaaagacctg
cctcagagcataactgtctccagccccccccccccaaaaaaaaacctgtc
acaggagagagcaggtaggtgttgcctgcctctctgccacgatgggggta
cctctcacaagatagctgcaggccacagtgatggtgtgacatggggagct
agctgaacaaggagaacatcacaccataccagagccactctgggcctggt
gtaccttctccctagtgagaggaataaaaaaggagggtgcacaggaacct
ttcaggatactaaggccccatgtatgggctggtcttggagcagaaggaga
ggatagaagatcttagctgcagggccaaacttgtcactatgcaccatggc
agtatttgctttgtggttggtttggtgccagggatggatatacccagacc
ttgctgatgctagcagttatctaccccagagctacttctattctaaagaa
atatactacagagacccagtgtctatagtcttctaagaaaagactcagta
gcatgggacctgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_73838050_73839133
seq2: B6Ng01-079I15.g_71_1135 (reverse)

seq1  CAGCAGGTCCCATGCTACCTGAGTCTTTTCTCTAGGAAGGACCTTATAGA  50
      ||||||||||||||||| ||||||||||||| |||  | |||  ||||||
seq2  CAGCAGGTCCCATGCTA-CTGAGTCTTTTCT-TAG--AAGAC--TATAGA  44

seq1  CCACTGGGGTCTCCTGTGGTATATTTCCTTTAGGAATAGAAGGTTAGCTC  100
       |||| |||||| |||| |||||||| ||||| |||||||||  ||||||
seq2  -CACT-GGGTCT-CTGTAGTATATTT-CTTTA-GAATAGAAG--TAGCTC  87

seq1  TGGGGGTAGATAACTTGCTTAGCATCAGCAAGGTTCTGGGTTATATCCAT  150
      | |||||||||||| ||| |||||||||||||| |||||| |||||||||
seq2  T-GGGGTAGATAAC-TGC-TAGCATCAGCAAGG-TCTGGG-TATATCCAT  132

seq1  CCCTGGCACCCAAACCAACCACAAAGCAAATACTGCCATGGTGCATAGTG  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCA-CCAAACCAACCACAAAGCAAATACTGCCATGGTGCATAGTG  181

seq1  ACAAGTTTGGCCCTGCAGCTAAGATCTTCTATCCTCTCCTTCTGCTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTGGCCCTGCAGCTAAGATCTTCTATCCTCTCCTTCTGCTCCAA  231

seq1  GACCAGCCCATACATGGGGCCTTAGTATCCTGAAAGGTTCCTGTGCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCCCATACATGGGGCCTTAGTATCCTGAAAGGTTCCTGTGCACCC  281

seq1  TCCTTTTTTATTCCTCTCACTAGGGAGAAGGTACACCAGGCCCAGAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTATTCCTCTCACTAGGGAGAAGGTACACCAGGCCCAGAGTGG  331

seq1  CTCTGGTATGGTGTGATGTTCTCCTTGTTCAGCTAGCTCCCCATGTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTATGGTGTGATGTTCTCCTTGTTCAGCTAGCTCCCCATGTCACA  381

seq1  CCATCACTGTGGCCTGCAGCTATCTTGTGAGAGGTACCCCCATCGTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTGTGGCCTGCAGCTATCTTGTGAGAGGTACCCCCATCGTGGCA  431

seq1  GAGAGGCAGGCAACACCTACCTGCTCTCTCCTGTGACAGGTTTTTTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCAGGCAACACCTACCTGCTCTCTCCTGTGACAGGTTTTTTTTTG  481

seq1  GGGGGGGGGGGCTGGAGACAGTTATGCTCTGAGGCAGGTCTTTGTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGGCTGGAGACAGTTATGCTCTGAGGCAGGTCTTTGTTCTTC  531

seq1  AGGGGCACCCAGAGACAGATGACCACACTCTGTGTAAAGCCCTCCTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCACCCAGAGACAGATGACCACACTCTGTGTAAAGCCCTCCTATAA  581

seq1  AGCTATAGCAAGACCTATCTCACTTGAGGACAGAGTCACAGCCATAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAGCAAGACCTATCTCACTTGAGGACAGAGTCACAGCCATAGCTT  631

seq1  CCAGAGTGAATTCTGAACTTAGGCCTTGATCTCAACTGTGACTGTTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGAATTCTGAACTTAGGCCTTGATCTCAACTGTGACTGTTACAA  681

seq1  GGCTCCAGTTACCTTGAATTTTCCTCTCCTACAACCCTATCCCAGAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAGTTACCTTGAATTTTCCTCTCCTACAACCCTATCCCAGAGCTG  731

seq1  TCTGTGGCCTGTGGGATGTTGTCACCCCACATTAGCCTGTGTATTCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCCTGTGGGATGTTGTCACCCCACATTAGCCTGTGTATTCTTGT  781

seq1  TAAATGTCACAGAACAGGAGTCATCTTCTCAGAGACCATGGCCACTGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCACAGAACAGGAGTCATCTTCTCAGAGACCATGGCCACTGGTA  831

seq1  TCCCCACCTCCCCTTACTGATCCCTGAATGTCAGCCCCTCTTTATCCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCTCCCCTTACTGATCCCTGAATGTCAGCCCCTCTTTATCCTTT  881

seq1  CTTGAGTGTCTGATGAGCCTGTCACCTGCCTCCCGGCTTTTTCTAGCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTGTCTGATGAGCCTGTCACCTGCCTCCCGGCTTTTTCTAGCCAA  931

seq1  GCAGGCCTTGGCATAGTCCACACTATCTTCCATGAGAACAGACAGGATAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCTTGGCATAGTCCACACTATCTTCCATGAGAACAGACAGGATAC  981

seq1  CCTGAGTATGGTGGGCCCTGTGAAAAGTGTCTTGATCTCTAGAAGATTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTATGGTGGGCCCTGTGAAAAGTGTCTTGATCTCTAGAAGATTCT  1031

seq1  TTCCATTGACACAACACTGCTGTGAGTTGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  TTCCATTGACACAACACTGCTGTGAGTTGAATTC  1065