BAC Information

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BAC

Clone NameB6Ng01-079I17
Chromosome15 (Build37)
Map Location 76,267,180 - 76,453,336
singlet/doubletdoublet
Overlap geneBop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28
Upstream geneLy6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5
Downstream geneNfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079I17.bB6Ng01-079I17.g
ACCDH894923DH894924
length668952
definitionDH894923|Mus musculus domesticus DNA, BAC clone: B6Ng01-079I17, 5' end.DH894924|Mus musculus domesticus DNA, BAC clone: B6Ng01-079I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,267,180 - 76,267,847)(76,452,388 - 76,453,336)
sequence
gaattctcttttgtaaccctgtctatgaacatttatcttcttcatatggt
gagggtttctggcagaggctgataggaagggcccctgggccctttctagt
aacgctcagtgctaggcggatgggtcaggagggcccgggctctgtagttg
gggcttggtaccatgatgctcttccttctggtgtatttccagtgctggga
gagaaagaagaggaggcggagctggagggtggaggaggcggagctggagg
gtggggaagctgcagacctgtcctgaaatccctgtattctagaaagttcc
agagcagctccacacaggtcactctgctgtcccctgtgtgatccctgccc
tgcagctgcacaaggaccaccttcctggaacagttccagacccagaaggg
tgaactcggcagagctaggccctgacgttttcctcgggactcggtcgggg
gctgatccttcttctctgtcctggcatcgcccttgtaggtcatcgccaag
cgcctcccctcagaccagctcatcagtctcttgctcacggtgtttgagag
cctgggagacccagacaagaactgctcgcgcgcagccacagtcatgatca
actgcctgctgaaggagcggggcaatgtgctgctggaaaaggtgagtacg
gaggggggtgggatgggg
gaattcctctcagagttgtgatcccaaatgtccgtaggcccagacagtta
gcagacaggtcttaagtgtagcccccaagcaggaaggagccccagtgtgg
ggtgtcgggaggaacatgggtgggggcctggtccctataattggcctaca
agctatccccactgagtaagagatgcctaatgtacatgctccccacagct
cttcattacagtcatggacaagctgcgtctggagatccgtgccatggacg
aggtgcagaagttgggcagggagccccgggcctggatggaggggaacaga
gcaaggtacagagggtctcacgagggtagcgcttgtgtctgtagattcag
ccagacctgcgggagctgatggagacaatgcacagaatgagccacctgcc
tccagacttcgagggccgccagacagtcagccagtggtgagttgctctcc
cgcgcaggcgcagggagcctcgtggtggtgagtgggtctcccgcaggaag
cctcgtggtgatgtcacagcccctctgctcagacacacttgtgcctgtgc
ccctaggctgcagaccctgagtggtatgtcggcctctgacgagctggatg
actctcaagttcgccagatgctcttcgatctggagtccgcttacaacgcc
tttaaccgcttcctacacgcctaagcctcaccgagacaggaatgagagtg
gtagagatgtgacgactcagccccccagtgtgtctacatccgtcctagat
gcctatattgtcaggatatcacccacaataaatatttgtctaaccttcct
tgctgtgggcagctatactgagcccccgccctgtgtgatctctctctctc
tctctctctctctctctatatatatatatatatacatatatatatatata
tatttctgaccttggagtcagtgccctgtctcctggggcggggggggggg
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_76267180_76267847
seq2: B6Ng01-079I17.b_42_709

seq1  GAATTCTCTTTTGTAACCCTGTCTATGAACATTTATCTTCTTCATATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTGTAACCCTGTCTATGAACATTTATCTTCTTCATATGGT  50

seq1  GAGGGTTTCTGGCAGAGGCTGATAGGAAGGGCCCCTGGGCCCTTTCTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTCTGGCAGAGGCTGATAGGAAGGGCCCCTGGGCCCTTTCTAGT  100

seq1  AACGCTCAGTGCTAGGCGGATGGGTCAGGAGGGCCCGGGCTCTGTAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTCAGTGCTAGGCGGATGGGTCAGGAGGGCCCGGGCTCTGTAGTTG  150

seq1  GGGCTTGGTACCATGATGCTCTTCCTTCTGGTGTATTTCCAGTGCTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGTACCATGATGCTCTTCCTTCTGGTGTATTTCCAGTGCTGGGA  200

seq1  GAGAAAGAAGAGGAGGCGGAGCTGGAGGGTGGAGGAGGCGGAGCTGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAGAGGAGGCGGAGCTGGAGGGTGGAGGAGGCGGAGCTGGAGG  250

seq1  GTGGGGAAGCTGCAGACCTGTCCTGAAATCCCTGTATTCTAGAAAGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAAGCTGCAGACCTGTCCTGAAATCCCTGTATTCTAGAAAGTTCC  300

seq1  AGAGCAGCTCCACACAGGTCACTCTGCTGTCCCCTGTGTGATCCCTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCTCCACACAGGTCACTCTGCTGTCCCCTGTGTGATCCCTGCCC  350

seq1  TGCAGCTGCACAAGGACCACCTTCCTGGAACAGTTCCAGACCCAGAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGCACAAGGACCACCTTCCTGGAACAGTTCCAGACCCAGAAGGG  400

seq1  TGAACTCGGCAGAGCTAGGCCCTGACGTTTTCCTCGGGACTCGGTCGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCGGCAGAGCTAGGCCCTGACGTTTTCCTCGGGACTCGGTCGGGG  450

seq1  GCTGATCCTTCTTCTCTGTCCTGGCATCGCCCTTGTAGGTCATCGCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCCTTCTTCTCTGTCCTGGCATCGCCCTTGTAGGTCATCGCCAAG  500

seq1  CGCCTCCCCTCAGACCAGCTCATCAGTCTCTTGCTCACGGTGTTTGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCCCCTCAGACCAGCTCATCAGTCTCTTGCTCACGGTGTTTGAGAG  550

seq1  CCTGGGAGACCCAGACAAGAACTGCTCGCGCGCAGCCACAGTCATGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGACCCAGACAAGAACTGCTCGCGCGCAGCCACAGTCATGATCA  600

seq1  ACTGCCTGCTGAAGGAGCGGGGCAATGTGCTGCTGGAAAAGGTGAGTACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTGCTGAAGGAGCGGGGCAATGTGCTGCTGGAAAAGGTGAGTACG  650

seq1  GAGGGGGGTGGGATGGGG  668
      ||||||||||||||||||
seq2  GAGGGGGGTGGGATGGGG  668

seq1: chr15_76452388_76453336
seq2: B6Ng01-079I17.g_70_1020 (reverse)

seq1  CCCCCCCCCCCCGCCCCAGGAGACAGGGCACTGACT-CAAGGTCAGAAAT  49
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCCCCCCCCCCGCCCCAGGAGACAGGGCACTGACTCCAAGGTCAGAAAT  50

seq1  ATATATATATATATATGTATATATATATATATATAGAGAGAGAGAGAGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATGTATATATATATATATATAGAGAGAGAGAGAGAG  100

seq1  AGAGAGAGAGAGATCACACAGGGCGGGGGCTCAGTATAGCTGCCCACAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGATCACACAGGGCGGGGGCTCAGTATAGCTGCCCACAGC  150

seq1  -AGGAAGGTTAGACAAATATTTATTGTGGGTGATATCCTGACAATATAGG  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGTTAGACAAATATTTATTGTGGGTGATATCCTGACAATATAGG  200

seq1  CATCTAGGACGGATGTAGACACACTGGGGGGCTGAGTCGTCACATCTCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGGACGGATGTAGACACACTGGGGGGCTGAGTCGTCACATCTCTA  250

seq1  CCACTCTCATTCCTGTCTCGGTGAGGCTTAGGCGTGTAGGAAGCGGTTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCATTCCTGTCTCGGTGAGGCTTAGGCGTGTAGGAAGCGGTTAA  300

seq1  AGGCGTTGTAAGCGGACTCCAGATCGAAGAGCATCTGGCGAACTTGAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTTGTAAGCGGACTCCAGATCGAAGAGCATCTGGCGAACTTGAGAG  350

seq1  TCATCCAGCTCGTCAGAGGCCGACATACCACTCAGGGTCTGCAGCCTAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGCTCGTCAGAGGCCGACATACCACTCAGGGTCTGCAGCCTAGG  400

seq1  GGCACAGGCACAAGTGTGTCTGAGCAGAGGGGCTGTGACATCACCACGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGCACAAGTGTGTCTGAGCAGAGGGGCTGTGACATCACCACGAG  450

seq1  GCTTCCTGCGGGAGACCCACTCACCACCACGAGGCTCCCTGCGCCTGCGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGCGGGAGACCCACTCACCACCACGAGGCTCCCTGCGCCTGCGC  500

seq1  GGGAGAGCAACTCACCACTGGCTGACTGTCTGGCGGCCCTCGAAGTCTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGCAACTCACCACTGGCTGACTGTCTGGCGGCCCTCGAAGTCTGG  550

seq1  AGGCAGGTGGCTCATTCTGTGCATTGTCTCCATCAGCTCCCGCAGGTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGCTCATTCTGTGCATTGTCTCCATCAGCTCCCGCAGGTCTG  600

seq1  GCTGAATCTACAGACACAAGCGCTACCCTCGTGAGACCCTCTGTACCTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATCTACAGACACAAGCGCTACCCTCGTGAGACCCTCTGTACCTTG  650

seq1  CTCTGTTCCCCTCCATCCAGGCCCGGGGCTCCCTGCCCAACTTCTGCACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCCCCTCCATCCAGGCCCGGGGCTCCCTGCCCAACTTCTGCACC  700

seq1  TCGTCCATGGCACGGATCTCCAGACGCAGCTTGTCCATGACTGTAATGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCATGGCACGGATCTCCAGACGCAGCTTGTCCATGACTGTAATGAA  750

seq1  GAGCTGTGGGGAGCATGTACATTAGGCATCTCTTACTCAGTGGGGATAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGGGGAGCATGTACATTAGGCATCTCTTACTCAGTGGGGATAGC  800

seq1  TTGTAGGCCAATTATAGGGACCAGGCCCCCACCCATGTTCCTCCCGACAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGCCAATTATAGGGACCAGGCCCCCACCCATGTTCCTCCCGACAC  850

seq1  CCCACACTGGGGCTCCTTCCTGCTTGGGGGCTACACTTAAGACCTGTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTGGGGCTCCTTCCTGCTTGGGGGCTACACTTAAGACCTGTCTG  900

seq1  CTAACTGTCTGGGCCTACGGACATTTGGGATCACAACTCTGAGAGGAATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTCTGGGCCTACGGACATTTGGGATCACAACTCTGAGAGGAATT  950

seq1  C  949
      |
seq2  C  951