BAC Information

Click to search

BAC

Clone NameB6Ng01-079K02
Chromosome15 (Build37)
Map Location 85,763,620 - 85,928,912
singlet/doubletdoublet
Overlap geneCelsr1, BC021523
Upstream geneNup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu
Downstream geneCerk, LOC100042300, Tbc1d22a, LOC100042309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079K02.bB6Ng01-079K02.g
ACCDH894984DH894985
length1,022351
definitionDH894984|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K02, 5' end.DH894985|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,763,620 - 85,764,664)(85,928,561 - 85,928,912)
sequence
gaattccaggcaagccaagatgaaacaaaacaaaacaaaacaaaacaatc
aatcaaacaaacaaaaatcaaaccaaaccaaaatcgaaaacaacaagaaa
aaaaaaaaataaagaagaaaggaaggagagaaatgaatgcagccagggct
gataagatggctcaggagggaaaggggcttgctgccaagcccaatgacct
gacttagaatcctgggatgcacaggatggaaagagagaactgacccccac
aagctgtcctctgggtcacacatacacacatatagttaaatgaatagata
cataaatgtaaatttttaaatgagtgcagctgggacaatgcctaggtatt
tctttaacttgacaggatattgggtgagttggaccatcctcctcctgtga
ggtgggacatctgtgtgaagctctaagtgacactgcaagagttgcaggga
caaaggccaaggggaaggaactctggtttcccccagggctaccatctggt
tctgaagactcaaacttcagcaattgctgaagagtgtcctgcaggcccat
gggataaggaccacaatcccaatcccagcaaggctggatgggccagcatc
ttcaagcaaggctggatgggccagcatcttcaaggctttgcgctgggaca
acaaaaggctatgattcttgtagtaaacaagaatcagcagatcttggagg
aacagatgcatggctttgactctctcaagtctgtgactacacctttaatc
ccagctcacaggaggcagaggcaggtgggtctctgagtttaagaccagcc
tggtagaaaatgtgagttccaggacagctagggctacactgagaagctgt
ctcaaaaaaaacaaacaaacaaaacaaacaacaaaaaaaaacaaaaggat
ggacagaaccctataggaagaagcgctggtacacttttatcagcagacga
gcactttaggcagcacatcacagaaaggcacatgatgacatagcagttag
cagaaagaagagctgatgtcga
atttccagaggggaactgggggagaacccaagggttttttgtttttgttt
ttgttttgttttgttttgttttttcaaatcaaaagatagccacctatcaa
gtgccaggcacagcacagtcgccctggcattccttatgtcctgtttatgt
gtgctggtccctctagcagcaaagtcaagttccagatcccgggctggggt
catgatgggaccatgggatcctagagcctacaggtgatgccagttttcaa
agcagcctgggaatccaatcagatttaacaatgccactcttctcagcctg
tcaggccaggaagggtgaaccccaagtgacagggtgggggggggagggtt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_85763620_85764664
seq2: B6Ng01-079K02.b_37_1058

seq1  GAATTCCAGGCAAGCCAAGATGAAACAAAACAAAACAAAACAAAACAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCAAGCCAAGATGAAACAAAACAAAACAAAACAAAACAATC  50

seq1  AATCAAACAAACAAAAATCAAACCAAACCAAAATCGAAAACAACAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACAAACAAAAATCAAACCAAACCAAAATCGAAAACAACAAGAAA  100

seq1  AAAAAAAAATAAAGAAGAAAGGAAGGAGAGAAATGAATGCAGCCAGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATAAAGAAGAAAGGAAGGAGAGAAATGAATGCAGCCAGGGCT  150

seq1  GATAAGATGGCTCAGGAGGGAAAGGGGCTTGCTGCCAAGCCCAATGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGATGGCTCAGGAGGGAAAGGGGCTTGCTGCCAAGCCCAATGACCT  200

seq1  GACTTAGAATCCTGGGATGCACAGGATGGAAAGAGAGAACTGACCCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGAATCCTGGGATGCACAGGATGGAAAGAGAGAACTGACCCCCAC  250

seq1  AAGCTGTCCTCTGGGTCACACATACACACATATAGTTAAATGAATAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCCTCTGGGTCACACATACACACATATAGTTAAATGAATAGATA  300

seq1  CATAAATGTAAATTTTTAAATGAGTGCAGCTGGGACAATGCCTAGGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATGTAAATTTTTAAATGAGTGCAGCTGGGACAATGCCTAGGTATT  350

seq1  TCTTTAACTTGACAGGATATTGGGTGAGTTGGACCATCCTCCTCCTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAACTTGACAGGATATTGGGTGAGTTGGACCATCCTCCTCCTGTGA  400

seq1  GGTGGGACATCTGTGTGAAGCTCTAAGTGACACTGCAAGAGTTGCAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACATCTGTGTGAAGCTCTAAGTGACACTGCAAGAGTTGCAGGGA  450

seq1  CAAAGGCCAAGGGGAAGGAACTCTGGTTTCCCCCAGGGCTACCATCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCCAAGGGGAAGGAACTCTGGTTTCCCCCAGGGCTACCATCTGGT  500

seq1  TCTGAAGACTCAAACTTCAGCAATTGCTGAAGAGTGTCCTGCAGGCCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGACTCAAACTTCAGCAATTGCTGAAGAGTGTCCTGCAGGCCCAT  550

seq1  GGGATAAGGACCACAATCCCAATCCCAGCAAGGCTGGATGGGCCAGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAGGACCACAATCCCAATCCCAGCAAGGCTGGATGGGCCAGCATC  600

seq1  TTCAAGCAAGGCTGGATGGGCCAGCATCTTCAAGGCTTTGCGCTGGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCAAGGCTGGATGGGCCAGCATCTTCAAGGCTTTGCGCTGGGACA  650

seq1  ACAAAAGGCTATGATTCTTGTAGTAAACAAGAATCAGCAGATCTTGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGCTATGATTCTTGTAGTAAACAAGAATCAGCAGATCTTGGAGG  700

seq1  AACAGATGCATGGCTTTGACTCTCTCAAGTCTGTGACTACACCTTTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATGCATGGCTTTGACTCTCTCAAGTCTGTGACTACACCTTTAATC  750

seq1  CCAGCTCACAGGAGGCAGAGGCAGGTGGGTCTCTGAGTTTAAGACCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCACAGGAGGCAGAGGCAGGTGGGTCTCTGAGTTTAAGACCAGCC  800

seq1  TGGTAGAAAATGTGAGTTCCAGGACAGCTAGGGCTACACTGAGAAGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAAAATGTGAGTTCCAGGACAGCTAGGGCTACACTGAGAAGCTGT  850

seq1  CTCAAAAAAAAAACAAACAAAACAAAACAAACAAACAAAAAAAAAAACAA  900
      |||  ||||||||||||| ||||||||||||| ||||||||||||    |
seq2  CTC--AAAAAAAACAAAC-AAACAAAACAAAC-AACAAAAAAAAA---CA  893

seq1  AAAGGATGGACAGAAACCCTATAGGAAGAAGCGCTGGTACAACTATATCA  950
      ||||||||||||| |||||||||||||||||||||||||||  | |||||
seq2  AAAGGATGGACAG-AACCCTATAGGAAGAAGCGCTGGTACACTTTTATCA  942

seq1  GCAGACAGAGCAACTTTAAGGCAAGCACCATCACCAGAAAGGGCACATGA  1000
      |||||| |||| ||||| |||| |||| ||||| |||||| |||||||||
seq2  GCAGAC-GAGC-ACTTT-AGGC-AGCA-CATCA-CAGAAA-GGCACATGA  985

seq1  TGACCATAGCCAGTTAGCCAGAAAAGAAAGGA-AGCTGATTGTCGA  1045
      ||| ||||| ||||||||      |||||| | |||||| ||||||
seq2  TGA-CATAG-CAGTTAGC------AGAAAGAAGAGCTGA-TGTCGA  1022

seq1: chr15_85928561_85928912
seq2: B6Ng01-079K02.g_71_421 (reverse)

seq1  AAACCCTCCCCCCCCCACCCTGTCACTTGGGGTTCACCCTTCCTGGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTCCCCCCCCCACCCTGTCACTTGGGGTTCACCCTTCCTGGCCTG  50

seq1  ACAGGCTGAGAAGAGTGGCATTGTTAAATCTGATTGGATTCCCAGGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGAGAAGAGTGGCATTGTTAAATCTGATTGGATTCCCAGGCTGC  100

seq1  TTTGAAAACTGGCATCACCTGTAGGCTCTAGGATCCCATGGTCCCATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACTGGCATCACCTGTAGGCTCTAGGATCCCATGGTCCCATCAT  150

seq1  GACCCCAGCCCGGGATCTGGAACTTGACTTTGCTGCTAGAGGGACCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGCCCGGGATCTGGAACTTGACTTTGCTGCTAGAGGGACCAGCA  200

seq1  CACATAAACAGGACATAAGGAATGCCAGGGTGACTGTGCTGTGCCTGGCA  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACATAAACAGGACATAAGGAATGCCAGGGCGACTGTGCTGTGCCTGGCA  250

seq1  CTTGATAGGTGGCTATCTTTTGATTTGAAAAAACAAAACAAAACAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAGGTGGCTATCTTTTGATTTGAAAAAACAAAACAAAACAAAACA  300

seq1  AAAACAAAAACAAAAAAACCTTGGGTTCTCCCCCAGTTCCCCTCTTGGAA  350
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  AAAACAAAAACAAAAAACCCTTGGGTTCTCCCCCAGTTCCCCTC-TGGAA  349

seq1  AT  352
      ||
seq2  AT  351