BAC Information

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BAC

Clone NameB6Ng01-079P24
Chromosome15 (Build37)
Map Location 10,887,003 - 10,888,104
singlet/doubletsinglet
Overlap geneC1qtnf3
Upstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
Downstream geneAmacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772, Npr3, LOC381002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079P24.bB6Ng01-079P24.g
ACCDH895257DH895258
length1,1141,199
definitionDH895257|Mus musculus domesticus DNA, BAC clone: B6Ng01-079P24, 5' end.DH895258|Mus musculus domesticus DNA, BAC clone: B6Ng01-079P24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgaaaactgtcaagagggtagatttcggatgtagtcatcctag
gaaagcaaatggagtaatgcatatgttaactagccgttcagcaaggacat
acatgcaaatggcaaaccagctgctgtgtaggatcgctatatttctactt
ctcaactaaaatgtaagtgaacaagtgtacactttgtttccccagcactg
tgtgtgcttcagaggtctgagaaagtggagagacagagtttctcagacac
tcaagccaggatgagggatgcagcgtctaggggctccgtgaaagttgccg
gttgtctgcattgagagttactttagtctgactctacccaagacttctgg
gtgttgagaaagaggaggtttctgtgtcatttttggaatgagatcctgtt
tttgctgtcacaagctgacatggcagccgctgaccaagactgtcactctc
tctgcacggctgcacttccatcgcagcacatctgctgtgaaatttctgtt
ttctgtacctttgatcactcacctgccttaacaacttcctagcccccatg
ccatagatgctctcagcatcctacgatatcttctctgaatgtgactgtga
gttgattgaagttaaacttctctaagggtgaaggccagaagaacttataa
cattaagtgctctcaaatacctttacctgaagtttcttttatcatcattt
tttttttagtctccacaagctggaggactgcccccagactgcagcaagtg
ttgccatggagattatggatttcgtggttaccaagggccccctggacctc
caggtcctcctggcattccaggtaaggacacacaagttgcacagttcatt
tcagttagcagactgggtcagatctaggagccaagagcaaacatgaatac
gggcctgaagtgtactgggtgtgcatggaaatgcaaagattaaagaactt
gggcggggggagttggggttcctctagggtcagtggcagtggacacctgc
tttacaacatgtattcttctacagtactctctagaatcctaaaggtttca
aggaagggagcacttccagcctcacagaccgagtctacttactaggagtt
gggaaacactcagc
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaatgt
tcagcatccttaatcatcagagaaatgcaaatcaaaacaacactgagatt
ccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagca
gatgctggcgtggatgtggagagagaggaacactcctccattgttggtgg
gattgcaagtttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacatagtaataccagaggatcccgcagtacctctcctgggca
tatatccagaagatgccccaaccggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
tccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaggaatgaatttatgaaattcctaggcaaa
ttgatggacctggagggcatcatcctgagtgaggtaacacaatcacaaaa
gaactcaaatgatatgtactcactgataagtggatattagcccagaaact
tagtatacccgagatataagatacaatttgcaaaacacatgaaactgaag
aacgaagaccaaagtgtggacactttgccccttcttagaattggaaacaa
tcacccatggaagaagttacagagacaaagtttggagctgagacaaaagg
atgggaccatctagagactgccatatccagggatccatcccataattagc
ctccaaacgatgacaccattgcatacactagcaagcatttgctgaaagta
ccctgatattgctgtctcttgtgagactaggccggggactagcaaacaca
gaagtggatgctcatagtcagctattggatggatcacagggccccaatgg
aggagctagagaaagtaggtaatctctttacaagagtaaagagatcttgc
aggccccattggaggagctaagagaaagtaggtaatcttctttacaggag
gtaaagagatctgcaaccctgtaggtgcaacacattatgactaacagttc
ctggactcttggactcttagctggctaatggtatcaagatgctagtcagc
atactggaagagaggtccatgtgaacagcacaacctgttatatgtgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_10887003_10888104
seq2: B6Ng01-079P24.b_44_1157

seq1  GAATTCTTGAAAACTGTCAAGAGGGTAGATTTCGGATGTAGTCATCCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAAACTGTCAAGAGGGTAGATTTCGGATGTAGTCATCCTAG  50

seq1  GAAAGCAAATGGAGTAATGCATATGTTAACTAGCCGTTCAGCAAGGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAATGGAGTAATGCATATGTTAACTAGCCGTTCAGCAAGGACAT  100

seq1  ACATGCAAATGGCAAACCAGCTGCTGTGTAGGATCGCTATATTTCTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAATGGCAAACCAGCTGCTGTGTAGGATCGCTATATTTCTACTT  150

seq1  CTCAACTAAAATGTAAGTGAACAAGTGTACACTTTGTTTCCCCAGCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTAAAATGTAAGTGAACAAGTGTACACTTTGTTTCCCCAGCACTG  200

seq1  TGTGTGCTTCAGAGGTCTGAGAAAGTGGAGAGACAGAGTTTCTCAGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTTCAGAGGTCTGAGAAAGTGGAGAGACAGAGTTTCTCAGACAC  250

seq1  TCAAGCCAGGATGAGGGATGCAGCGTCTAGGGGCTCCGTGAAAGTTGCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCAGGATGAGGGATGCAGCGTCTAGGGGCTCCGTGAAAGTTGCCG  300

seq1  GTTGTCTGCATTGAGAGTTACTTTAGTCTGACTCTACCCAAGACTTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTGCATTGAGAGTTACTTTAGTCTGACTCTACCCAAGACTTCTGG  350

seq1  GTGTTGAGAAAGAGGAGGTTTCTGTGTCATTTTTGGAATGAGATCCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAGAAAGAGGAGGTTTCTGTGTCATTTTTGGAATGAGATCCTGTT  400

seq1  TTTGCTGTCACAAGCTGACATGGCAGCCGCTGACCAAGACTGTCACTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTCACAAGCTGACATGGCAGCCGCTGACCAAGACTGTCACTCTC  450

seq1  TCTGCACGGCTGCACTTCCATCGCAGCACATCTGCTGTGAAATTTCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACGGCTGCACTTCCATCGCAGCACATCTGCTGTGAAATTTCTGTT  500

seq1  TTCTGTACCTTTGATCACTCACCTGCCTTAACAACTTCCTAGCCCCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACCTTTGATCACTCACCTGCCTTAACAACTTCCTAGCCCCCATG  550

seq1  CCATAGATGCTCTCAGCATCCTACGATATCTTCTCTGAATGTGACTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGATGCTCTCAGCATCCTACGATATCTTCTCTGAATGTGACTGTGA  600

seq1  GTTGATTGAAGTTAAACTTCTCTAAGGGTGAAGGCCAGAAGAACTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTGAAGTTAAACTTCTCTAAGGGTGAAGGCCAGAAGAACTTATAA  650

seq1  CATTAAGTGCTCTCAAATACCTTTACCTGAAGTTTCTTTTATCATCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTGCTCTCAAATACCTTTACCTGAAGTTTCTTTTATCATCATTT  700

seq1  TTTTTTTAGTCTCCACAAGCTGGAGGACTGCCCCCAGACTGCAGCAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGTCTCCACAAGCTGGAGGACTGCCCCCAGACTGCAGCAAGTG  750

seq1  TTGCCATGGAGATTATGGATTTCGTGGTTACCAAGGGCCCCCTGGACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATGGAGATTATGGATTTCGTGGTTACCAAGGGCCCCCTGGACCTC  800

seq1  CAGGTCCTCCTGGCATTCCAGGTAAGGACACACAAGTTGCACAG-TCATT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGGTCCTCCTGGCATTCCAGGTAAGGACACACAAGTTGCACAGTTCATT  850

seq1  TCAG-TAGCAGACTGGGTCAGATCTAGGAGCCAAGAGCAAACATGAATAC  898
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGCAGACTGGGTCAGATCTAGGAGCCAAGAGCAAACATGAATAC  900

seq1  GGG-CTGAAGTGTACTGGGTGTGCATGGAAAATGCAAAGA-TAAAGAACT  946
      ||| |||||||||||||||||||||||| ||||||||||| |||||||||
seq2  GGGCCTGAAGTGTACTGGGTGTGCATGG-AAATGCAAAGATTAAAGAACT  949

seq1  TGG--CGGGGGAGTTGGG--TTCTCTA-GGTCAGTTGCAGTGGAACACTG  991
      |||   ||||||||||||  | ||||| ||||||| ||||||||   |||
seq2  TGGGCGGGGGGAGTTGGGGTTCCTCTAGGGTCAGTGGCAGTGGACACCTG  999

seq1  CTTTACAACATGTATTC-TCTACAGTACTC-CTAGAATCCTAAAGGTTTC  1039
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  CTTTACAACATGTATTCTTCTACAGTACTCTCTAGAATCCTAAAGGTTTC  1049

seq1  -AGGAAGGGAGGCACTT-CAGCACTCACAGACAGAG-CCACTTACTAGGA  1086
       ||||||||| |||||| |||| ||||||||| ||| | |||||||||||
seq2  AAGGAAGGGA-GCACTTCCAGC-CTCACAGACCGAGTCTACTTACTAGGA  1097

seq1  GTTGGAACACA-TCAGC  1102
      ||||| | ||| |||||
seq2  GTTGGGAAACACTCAGC  1114