BAC Information

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BAC

Clone NameB6Ng01-080B05
Chromosome15 (Build37)
Map Location 43,960,928 - 44,092,573
singlet/doubletdoublet
Overlap geneTrhr
Upstream geneRspo2, LOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309
Downstream geneLOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080B05.bB6Ng01-080B05.g
ACCDH895313DH895314
length1,162859
definitionDH895313|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B05, 5' end.DH895314|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,960,928 - 43,962,091)(44,091,721 - 44,092,573)
sequence
gaattctaacattccacatttcatggttcaaaactttcatgaatttaaag
acaaatttaaaaataagagaaaaagggaaaagctaaatgggaaaaaagaa
gagaaatggaaaaaatgctacttcctccagaactcattgccagattcgta
ttttccagaaaaaaaaatcttaaatattccttgcaattgggcacatctac
ctcagaaaaacacccaatttctgcagagtagattcttatgattttttaaa
attaacattattattatttgtagtaatagtatttgtaatatctcatcatc
tcactgacaagagtacccagtttacatgtagtattacagagtagtattct
atagaaatctactcctgacatatatactatttatagttgtccttaactca
tgacaaagtgaacaacagatgtattcattctcttaatgctctactttaaa
tattgttcatcatcaatatctaaatttaatgaaaagcaatttattttcaa
aagtaggcactaagactgtcatatcccagtagagcaacaactctacaagg
aagggtttatcaaagtaaggtgtctttatcagtcatttcaaaagcaggag
agaatgatacatgacaagcaggaacacatttcatgttactataaaagtaa
tgtatatgggaagtagacaagttgaaagttcttatgtagaaatgtcgttg
gtcctccaagccggtggcgacacgaacgacacagacaccaaggcgggttc
acgcaacaacgtctttaattttttttccccccttacagctctcttcccca
tcagcctcttctaccatccttctttcttgaagctttacttacagcaacta
ctacaacagctttctcttacactactagcttctactttagggcaaggact
aaaacaactccttttaacaacagcttctcttctactacttctactcacgg
caagggctaaaacaaaacaccctcttctctcaaagactgacttcatctag
ctccaacacaactcatccaatcagaatcacacacgcttcatgcacgagct
caagtcgttacagatagctgacaagtccggatcacaaggaacagtccagc
ctgcaggcagcccacgcatgctcggacaaagcagtaaaacaatgggtttc
cggggctgcggc
gaattcaacacctttagttgccgaggaactttctctaagagagataataa
gcaaaaatgaaaattggcttctaggattccattgaaagaatgcttatttg
cctctgctctcactgggtctggacaatcagactgagcaaggctctgtgat
ttgcatttacaaaccaaggtgaagcttctttggggcactgcttatttgct
aataaaaatgcaggaagaggcctggttctcagttgtctctgatatccctg
tgaaaggacagattggctcatctgacagtttctaaagcgtggagagagca
acgcagcagcctttgacggtgagattgaattttatgaacctatcggctaa
gaactgcagaagtagagtgcagacactgtggtctccctccaagtggactg
acaagatttggcagttttagggtcttgcggcagaatgttgtataatctca
gttcagtctctaggagttatgttcatacaaaacagctgaaaagcaggata
aactcagccgaatatcttgtctttaaagaccttagcagttaaaatctccc
cgaaattcaccttagcactctgtgaggtcagttatttgcaacccatacat
ttgtttgttttgttttgttttgttcttttgtttttttgttggtttattta
tttattttttggttgttgtttgttttcattttctggttatttctcagctg
atgacagtcaaattatgaatcatcctgaattctttcctcctcaactcccc
aacccatacaaactagatgatgccatcggatgagcctgttttacagacat
tattgttccacacggtattacaatagtgctatcaacagcttgagaaaaac
ctgctgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_43960928_43962091
seq2: B6Ng01-080B05.b_47_1208

seq1  GAATTCTAACATTCCACATTTCATGGTTCAAAACTTTCATGAATTTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACATTCCACATTTCATGGTTCAAAACTTTCATGAATTTAAAG  50

seq1  ACAAATTTAAAAATAAGAGAAAAAGGGAAAAGCTAAATGGGAAAAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTAAAAATAAGAGAAAAAGGGAAAAGCTAAATGGGAAAAAAGAA  100

seq1  GAGAAATGGAAAAAATGCTACTTCCTCCAGAACTCATTGCCAGATTCGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGGAAAAAATGCTACTTCCTCCAGAACTCATTGCCAGATTCGTA  150

seq1  TTTTCCAGAAAAAAAAATCTTAAATATTCCTTGCAATTGGGCACATCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGAAAAAAAAATCTTAAATATTCCTTGCAATTGGGCACATCTAC  200

seq1  CTCAGAAAAACACCCAATTTCTGCAGAGTAGATTCTTATGATTTTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAAACACCCAATTTCTGCAGAGTAGATTCTTATGATTTTTTAAA  250

seq1  ATTAACATTATTATTATTTGTAGTAATAGTATTTGTAATATCTCATCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATTATTATTATTTGTAGTAATAGTATTTGTAATATCTCATCATC  300

seq1  TCACTGACAAGAGTACCCAGTTTACATGTAGTATTACAGAGTAGTATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGACAAGAGTACCCAGTTTACATGTAGTATTACAGAGTAGTATTCT  350

seq1  ATAGAAATCTACTCCTGACATATATACTATTTATAGTTGTCCTTAACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATCTACTCCTGACATATATACTATTTATAGTTGTCCTTAACTCA  400

seq1  TGACAAAGTGAACAACAGATGTATTCATTCTCTTAATGCTCTACTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGTGAACAACAGATGTATTCATTCTCTTAATGCTCTACTTTAAA  450

seq1  TATTGTTCATCATCAATATCTAAATTTAATGAAAAGCAATTTATTTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCATCATCAATATCTAAATTTAATGAAAAGCAATTTATTTTCAA  500

seq1  AAGTAGGCACTAAGACTGTCATATCCCAGTAGAGCAACAACTCTACAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGCACTAAGACTGTCATATCCCAGTAGAGCAACAACTCTACAAGG  550

seq1  AAGGGTTTATCAAAGTAAGGTGTCTTTATCAGTCATTTCAAAAGCAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTTATCAAAGTAAGGTGTCTTTATCAGTCATTTCAAAAGCAGGAG  600

seq1  AGAATGATACATGACAAGCAGGAACACATTTCATGTTACTATAAAAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGATACATGACAAGCAGGAACACATTTCATGTTACTATAAAAGTAA  650

seq1  TGTATATGGGAAGTAGACAAGTTGAAAGTTCTTATGTAGAAATGTCGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGGGAAGTAGACAAGTTGAAAGTTCTTATGTAGAAATGTCGTTG  700

seq1  GTCCTCCAAGCCGGTGGCGACACGAACGACACAGACACCAAGGCGGGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCAAGCCGGTGGCGACACGAACGACACAGACACCAAGGCGGGTTC  750

seq1  ACGCAACAACGTCTTTAA-TTTTTTTCCCCCCTTACAGCTCTCTTCCCCA  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACGCAACAACGTCTTTAATTTTTTTTCCCCCCTTACAGCTCTCTTCCCCA  800

seq1  TCAGCCTCTTCTACCATCCTTCTTTCTTGAAGCTTTACTTACAGCAACTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCTTCTACCATCCTTCTTTCTTGAAGCTTTACTTACAGCAACTA  850

seq1  CTACAACAGC-TTCTCTTACAACTACTAGCTTCTAC-TTAGGGCAAGGAC  897
      |||||||||| ||||||||| ||||||||||||||| |||||||||||||
seq2  CTACAACAGCTTTCTCTTAC-ACTACTAGCTTCTACTTTAGGGCAAGGAC  899

seq1  TAAAACAACTCCTATT-ACAACAGCTTCTCTTCTACTACTTCTACTCACG  946
      ||||||||||||| || |||||||||||||||||||||||||||||||||
seq2  TAAAACAACTCCTTTTAACAACAGCTTCTCTTCTACTACTTCTACTCACG  949

seq1  GCAAGGGCTAAAACAAAACACCCTCTTCTCTCACAGACTGACTTCATCTA  996
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAAGGGCTAAAACAAAACACCCTCTTCTCTCAAAGACTGACTTCATCTA  999

seq1  GCTCCACACCACCTCATCCAATCAGAATTCACACACGCTTCAGGCACGAG  1046
      ||||||   || ||||||||||||||| |||||||||||||| |||||||
seq2  GCTCCAACACAACTCATCCAATCAGAA-TCACACACGCTTCATGCACGAG  1048

seq1  CTCAGGTCGTTCACAGATAGGCTGACAAGTCCGGATCACAAGGAACAGTC  1096
      |||| |||||| ||||||| ||||||||||||||||||||||||||||||
seq2  CTCAAGTCGTT-ACAGATA-GCTGACAAGTCCGGATCACAAGGAACAGTC  1096

seq1  CAGCCTGCAGGCAGCCCACGCATGCTCGGACAAGGCAGTAAACAAGTGGG  1146
      ||||||||||||||||||||||||||||||||| ||||||||  | ||||
seq2  CAGCCTGCAGGCAGCCCACGCATGCTCGGACAAAGCAGTAAAACAATGGG  1146

seq1  TTTCGCGGGGCCTGCGGC  1164
      |||| ||||| |||||||
seq2  TTTC-CGGGG-CTGCGGC  1162

seq1: chr15_44091721_44092573
seq2: B6Ng01-080B05.g_68_926 (reverse)

seq1  CCTCAGCAGG-TTTTCTC-AGCTGTTGATAGCACTATTGTATATACCGTG  48
      |||||||||| ||||||| |||||||||||||||||||||| ||||||||
seq2  CCTCAGCAGGTTTTTCTCAAGCTGTTGATAGCACTATTGTA-ATACCGTG  49

seq1  TGGAACAATAATGTCTGTGAAAACAGGCTCAT-CGATGGCATCATCTAGT  97
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  TGGAACAATAATGTCTGT-AAAACAGGCTCATCCGATGGCATCATCTAGT  98

seq1  TTGTATGGGTTGGGGAGTTGAGGAGG-AAGAATTCAGGATGATTCAT-AT  145
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  TTGTATGGGTTGGGGAGTTGAGGAGGAAAGAATTCAGGATGATTCATAAT  148

seq1  TTGACTGTCATCAGCTGAGAAATAACCAG-AAATGAAAAC-AACAACAAC  193
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  TTGACTGTCATCAGCTGAGAAATAACCAGAAAATGAAAACAAACAACAAC  198

seq1  CAAAAAATAAATAAATAAACCAAC-AAAAAACAAAAGAACAAAACAAAAC  242
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAAAAAATAAATAAATAAACCAACAAAAAAACAAAAGAACAAAACAAAAC  248

seq1  AAAACAAACAAATGTATGGGTTGCAAATAACTGACCTCACAGAGTGCTAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAATGTATGGGTTGCAAATAACTGACCTCACAGAGTGCTAA  298

seq1  GGTGAATTTCGGGGAGATTTTAACTGCTAAGGTCTTTAAAGACAAGATAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTTCGGGGAGATTTTAACTGCTAAGGTCTTTAAAGACAAGATAT  348

seq1  TCGGCTGAGTTTATCCTGCTTTTCAGCTGTTTTGTATGAACATAACTCCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTGAGTTTATCCTGCTTTTCAGCTGTTTTGTATGAACATAACTCCT  398

seq1  AGAGACTGAACTGAGATTATACAACATTCTGCCGCAAGACCCTAAAACTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGAACTGAGATTATACAACATTCTGCCGCAAGACCCTAAAACTG  448

seq1  CCAAATCTTGTCAGTCCACTTGGAGGGAGACCACAGTGTCTGCACTCTAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTTGTCAGTCCACTTGGAGGGAGACCACAGTGTCTGCACTCTAC  498

seq1  TTCTGCAGTTCTTAGCCGATAGGTTCATAAAATTCAATCTCACCGTCAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGTTCTTAGCCGATAGGTTCATAAAATTCAATCTCACCGTCAAA  548

seq1  GGCTGCTGCGTTGCTCTCTCCACGCTTTAGAAACTGTCAGATGAGCCAAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGCGTTGCTCTCTCCACGCTTTAGAAACTGTCAGATGAGCCAAT  598

seq1  CTGTCCTTTCACAGGGATATCAGAGACAACTGAGAACCAGGCCTCTTCCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTCACAGGGATATCAGAGACAACTGAGAACCAGGCCTCTTCCT  648

seq1  GCATTTTTATTAGCAAATAAGCAGTGCCCCAAAGAAGCTTCACCTTGGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTATTAGCAAATAAGCAGTGCCCCAAAGAAGCTTCACCTTGGTT  698

seq1  TGTAAATGCAAATCACAGAGCCTTGCTCAGTCTGATTGTCCAGACCCAGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGCAAATCACAGAGCCTTGCTCAGTCTGATTGTCCAGACCCAGT  748

seq1  GAGAGCAGAGGCAAATAAGCATTCTTTCAATGGAATCCTAGAAGCCAATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGAGGCAAATAAGCATTCTTTCAATGGAATCCTAGAAGCCAATT  798

seq1  TTCATTTTTGCTTATTATCTCTCTTAGAGAAAGTTCCTCGGCAACTAAAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTGCTTATTATCTCTCTTAGAGAAAGTTCCTCGGCAACTAAAG  848

seq1  GTGTTGAATTC  853
      |||||||||||
seq2  GTGTTGAATTC  859