BAC Information

Click to search

BAC

Clone NameB6Ng01-080B11
Chromosome15 (Build37)
Map Location 42,705,149 - 42,706,310
singlet/doubletsinglet
Overlap genenone
Upstream geneEG432946, LOC432947, LOC100039268, LOC100039197, Angpt1
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080B11.bB6Ng01-080B11.g
ACCDH895325DH895326
length1,1651,153
definitionDH895325|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B11, 5' end.DH895326|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaccagaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaactcaaaacaacccttccac
ctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatg
ctggcaaggatgtggagaaagaggaacactccttcattgttggtgggatt
gcaagcttgtacaaccactctggaaatcagtttggtggttcctcagaaaa
ttgggcataatagtaccagagaatccagcaatacctctcctgggcatata
tccagaagatgttccaaccggtaagaaggacacatgctccactatgttca
tagcagccttatttataatagccagaagctggaaagaacccagatgtccc
tcaacaaaggaatgaatacagaaaatgtggtacatttacacaatggagta
ctactcagctattagaagtaatgaacttatgaaattcctaggcaaatgga
tggacctggagggcatcatcctgagtgaggtaacacaatcacaaagaaac
tcacacaatatgtactcactgataagtggatattagcccaaaacttagga
tacccaagatataagatacaatttgttaaacgcctgaaactcaagaagaa
tgaagactgaagtgtggacactgtgccccttcttagaattgggaacaaaa
cacacatggaaagagttacagagataaagtttggagctgtgaggaaagga
tgaaccatctaaagactgccatgtccagggatccatcccataatcagcct
ccaaacgctgacaccattgtatacactagcaagattttgctgaaaggacc
cagatatagatgtctcttgtgagactatgcctgggactagcaaacacaga
agtggatgctcacagtcagctaatggatgaatcacagggcccccaatgga
ggagctagagaaagtacccaaggagctaaagggaactgcaaccctattag
tggaacaacattatgactaccagtaccccagagctcttgactctagttgc
atatgtataaaaagatggctagtggcatcactgtaaggaaggcccatctg
actgcaactttatatgcccagtacagggacgcaggcaaagtgggatgggt
gtgtgtaggggaagt
gaattcccagattgaattcaaattatttttcttgttaatctgggaagatg
gatctgtgtgttctaaccagaccaactgatgtctcacagatgtcaccgag
agctgtgaacagcggccatgcctggatgttgccaagtgttagtgtggata
tcaaggaaggatgaagagaacgcgtggagtggaacggaaattgtgttcaa
gtagtgtgctagacaggtgtctggaagcctgcgtcttggcacaatgaatt
cgttgtctccgtaataggaggggcttactgacactccctctgtgtggtaa
aaatacacccagcaatttgacaacacagtttatctttctgttttagcgaa
gaaactgctttcattttgttaacaccactctggagtgctcggccacccag
aagtaagacgctccaacctcttctttctttggagaactctcctgagataa
gagtagacctatcaattatcttcctgagaactgacaacaaatacttaact
taccacactgaagtgtcactgtaataattgttctgctttagtaaatgcct
attgcattttaaacagcaaaaacatgtcagcagcacaggtcagcattata
gaacacacattttctgatgttggaagcaccctttcgaatgaaattgatat
tgtttctaaattccatctttacaggtaatatggaaatgagggcttttcaa
agctaggccatgttgctctactttctatttttcccctctgtcataccaca
accaaatgagaaaacttttgtgtatgtgtatgtgtatgtgtgcaaaaccc
actataatactaagctagtaattttatagttggcagatgtctttactgtc
tgctttgttgctaagttatctcatttgaattttgctttaagttctaaatt
ggatctaatcattcattcattcactccttccttccttccttccttacttc
cttccttccttctcatcttaagctgagtattaaagtcagaccctttttgt
gctgggcaaatgctctacaacactggcctatttcttcaggcccaaatcac
ctgacttctactcatctttccaatttatggtaataaaaatccccccacac
agcatttgttggataggttaaaaaaattaattctctagaagcttgaacag
ttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_42705149_42706310
seq2: B6Ng01-080B11.g_70_1222 (reverse)

seq1  CAACATGTTCTAAAAGCTTCCTAG-GAATTAATTTATTTAA-CTATCCAA  48
      |||| |||||   |||||| |||| |||||||||| ||||| |||||| |
seq2  CAAC-TGTTC---AAGCTT-CTAGAGAATTAATTTTTTTAACCTATCC-A  44

seq1  ACAAATGCTGTGTAGTGGGTATTTTTATTAACAT-AATTTGAAAGATGAG  97
      ||||||||||||| | ||| |||||||||| ||| |||| ||||||||||
seq2  ACAAATGCTGTGT-GGGGGGATTTTTATTACCATAAATTGGAAAGATGAG  93

seq1  TAGAAGTCAGGTGATTTTGGGGCTGAAGACATAGCTCAGTTGTTGTAGAG  147
      |||||||||||||| |||||| ||||||| ||||  ||| ||||||||||
seq2  TAGAAGTCAGGTGA-TTTGGGCCTGAAGAAATAGGCCAG-TGTTGTAGAG  141

seq1  CATTTGCCCAGCACAAAAAAGGGTCTGACTTTAATACTCAGCTTAAGATG  197
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATTTGCCCAGCAC-AAAAAGGGTCTGACTTTAATACTCAGCTTAAGATG  190

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGTGAATGAA  247
      |  |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  A--GAAGGAAGGAAGGAAGTAAGGAAGGAAGGAAGGAAGGAGTGAATGAA  238

seq1  TGAATGATTAGATCCAATTTAGAACTTAAAGCAAAATTCAAATGAGATAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATTAGATCCAATTTAGAACTTAAAGCAAAATTCAAATGAGATAA  288

seq1  CTTAGCAACAAAGCAGACAGTAAAGACATCTGCCAACTATAAAATTACTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAACAAAGCAGACAGTAAAGACATCTGCCAACTATAAAATTACTA  338

seq1  GCTTAGTATTATAGTGGGTTTTGCACACATACACATACACATACACAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTATTATAGTGGGTTTTGCACACATACACATACACATACACAAAA  388

seq1  GTTTTCTCATTTGGTTGTGGTATGACAGAGGGGAAAAATAGAAAGTAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCATTTGGTTGTGGTATGACAGAGGGGAAAAATAGAAAGTAGAG  438

seq1  CAACATGGCCTAGCTTTGAAAAGCCCTCATTTCCATATTACCTGTAAAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGCCTAGCTTTGAAAAGCCCTCATTTCCATATTACCTGTAAAGA  488

seq1  TGGAATTTAGAAACAATATCAATTTCATTCGAAAGGGTGCTTCCAACATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTAGAAACAATATCAATTTCATTCGAAAGGGTGCTTCCAACATC  538

seq1  AGAAAATGTGTGTTCTATAATGCTGACCTGTGCTGCTGACATGTTTTTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTGTGTTCTATAATGCTGACCTGTGCTGCTGACATGTTTTTGC  588

seq1  TGTTTAAAATGCAATAGGCATTTACTAAAGCAGAACAATTATTACAGTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAATGCAATAGGCATTTACTAAAGCAGAACAATTATTACAGTGA  638

seq1  CACTTCAGTGTGGTAAGTTAAGTATTTGTTGTCAGTTCTCAGGAAGATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGTGTGGTAAGTTAAGTATTTGTTGTCAGTTCTCAGGAAGATAA  688

seq1  TTGATAGGTCTACTCTTATCTCAGGAGAGTTCTCCAAAGAAAGAAGAGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGTCTACTCTTATCTCAGGAGAGTTCTCCAAAGAAAGAAGAGGT  738

seq1  TGGAGCGTCTTACTTCTGGGTGGCCGAGCACTCCAGAGTGGTGTTAACAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCGTCTTACTTCTGGGTGGCCGAGCACTCCAGAGTGGTGTTAACAA  788

seq1  AATGAAAGCAGTTTCTTCGCTAAAACAGAAAGATAAACTGTGTTGTCAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGCAGTTTCTTCGCTAAAACAGAAAGATAAACTGTGTTGTCAAA  838

seq1  TTGCTGGGTGTATTTTTACCACACAGAGGGAGTGTCAGTAAGCCCCTCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGTGTATTTTTACCACACAGAGGGAGTGTCAGTAAGCCCCTCCT  888

seq1  ATTACGGAGACAACGAATTCATTGTGCCAAGACGCAGGCTTCCAGACACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGGAGACAACGAATTCATTGTGCCAAGACGCAGGCTTCCAGACACC  938

seq1  TGTCTAGCACACTACTTGAACACAATTTCCGTTCCACTCCACGCGTTCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGCACACTACTTGAACACAATTTCCGTTCCACTCCACGCGTTCTC  988

seq1  TTCATCCTTCCTTGATATCCACACTAACACTTGGCAACATCCAGGCATGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTTCCTTGATATCCACACTAACACTTGGCAACATCCAGGCATGG  1038

seq1  CCGCTGTTCACAGCTCTCGGTGACATCTGTGAGACATCAGTTGGTCTGGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGTTCACAGCTCTCGGTGACATCTGTGAGACATCAGTTGGTCTGGT  1088

seq1  TAGAACACACAGATCCATCTTCCCAGATTAACAAGAAAAATAATTTGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACACACAGATCCATCTTCCCAGATTAACAAGAAAAATAATTTGAAT  1138

seq1  TCAATCTGGGAATTC  1162
      |||||||||||||||
seq2  TCAATCTGGGAATTC  1153