BAC Information

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BAC

Clone NameB6Ng01-081A14
Chromosome9 (Build37)15 (Build37)
Map Location 5,944,390 - 5,944,50219,366,816 - 19,367,378
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG664889, Casp1, Casp4, Casp12, LOC547033, LOC100039361
Downstream geneLOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034, Dync2h1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081A14.bB6Ng01-081A14.g
ACCDH896004DH896005
length276969
definitionDH896004|Mus musculus domesticus DNA, BAC clone: B6Ng01-081A14, 5' end.DH896005|Mus musculus domesticus DNA, BAC clone: B6Ng01-081A14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,944,390 - 5,944,502)(19,366,816 - 19,367,378)
sequence
cctgcacacccattgcacctctattcccaatagtaaagatatagaatcaa
accaacattatcacatttaacattaatttttagatttaataggtaataaa
atgtttgtatatatgtaatgtattatgattcatcttggaaaagataaaac
tcagtgaggcatggagcagaggatggcctactcgccatcagtgggaggag
agtcccttggtcttgagaagattctatgccccagcataggggaatgccag
ggccaggaagtgggagtgggtgggtt
gaattcaactgagactggctaagaatgcaaggagcagttatatagcttgg
aatctaatttttctgtccagatcctttccaggaaccagctttccttgttg
aaactcagcaaccaaactttcaggattaaattctgactacccttgctgtt
gctgaagcaagaaagggagaaatcttgggtgaaaaaagcattgaaaagct
aaaacaaaatgaactatacctgtcagaaggttcaaaactaatacccacta
atgagaggtatcatttgaggtttatctaaaagcatgtggacggcatcatt
taaagtgattctttccacttctatacactttcaatgtgaatttcaatttt
tcattcttattagcagccaaataaaatttcattgtaggcagatcagcatg
cctactccacaaacctggctgtctcccaggaagtctgctctaacctgggg
cacagagaccagtagatgtgggttctgtcatgctctgccagagccctata
gcccctcctttctgcacctacacctatacctgtggtagactggcctgctt
gtttccccatcctatgcccattcctgttaccatggaggtctgctctaacc
agagatagagctgtctccctgtaggcttgctttaacctgggacaaacagt
tccacttgtctccaaggagactaggaaaatcagttaaccctgagccagtt
aacaccagagatagacatggcaaaaggcaactacaagatcataatcaaca
ggagccaatacaaaccgacacaatcagaagaacccagctccactaccaca
acaaaggctggatatgctaacacacctgaagaaaagattctggcctttaa
tcccatctcataaaaatgataaaaggctttgaggagatataaaagtttcc
cttgaagaaatacagaaatacacaagcaaacaggtagaagtctcaaacag
aaaacaaatgcacccctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5944390_5944502
seq2: B6Ng01-081A14.b_217_328 (reverse)

seq1  AACCCACCCACTCCCACTTCCTGGCCCTGACATTGCCCTATACTGGGGCA  50
      ||||||||||||||||||||||||||||| |||| |||||| ||||||||
seq2  AACCCACCCACTCCCACTTCCTGGCCCTGGCATTCCCCTATGCTGGGGCA  50

seq1  TAGAACCTTCCCAAGACCAAGGGCCTCTCCTCCCATTGATGACCAACTAG  100
      ||||| |||| |||||||||||| ||||||||||| |||||  | | |||
seq2  TAGAATCTTCTCAAGACCAAGGGACTCTCCTCCCACTGATG-GCGAGTAG  99

seq1  GCCATCCTCTGCT  113
      |||||||||||||
seq2  GCCATCCTCTGCT  112

seq1: chr15_19366816_19367378
seq2: B6Ng01-081A14.g_67_629 (reverse)

seq1  AGGATGGGGAAACAAGCAGGCCAGTCTACCACAGGTATAGGTGTAGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGGAAACAAGCAGGCCAGTCTACCACAGGTATAGGTGTAGGTGC  50

seq1  AGAAAGGAGGGGCTATAGGGCTCTGGCAGAGCATGACAGAACCCACATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGGGGCTATAGGGCTCTGGCAGAGCATGACAGAACCCACATCT  100

seq1  ACTGGTCTCTGTGCCCCAGGTTAGAGCAGACTTCCTGGGAGACAGCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTCTGTGCCCCAGGTTAGAGCAGACTTCCTGGGAGACAGCCAGG  150

seq1  TTTGTGGAGTAGGCATGCTGATCTGCCTACAATGAAATTTTATTTGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGAGTAGGCATGCTGATCTGCCTACAATGAAATTTTATTTGGCTG  200

seq1  CTAATAAGAATGAAAAATTGAAATTCACATTGAAAGTGTATAGAAGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAGAATGAAAAATTGAAATTCACATTGAAAGTGTATAGAAGTGGA  250

seq1  AAGAATCACTTTAAATGATGCCGTCCACATGCTTTTAGATAAACCTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCACTTTAAATGATGCCGTCCACATGCTTTTAGATAAACCTCAAA  300

seq1  TGATACCTCTCATTAGTGGGTATTAGTTTTGAACCTTCTGACAGGTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCTCTCATTAGTGGGTATTAGTTTTGAACCTTCTGACAGGTATAG  350

seq1  TTCATTTTGTTTTAGCTTTTCAATGCTTTTTTCACCCAAGATTTCTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTGTTTTAGCTTTTCAATGCTTTTTTCACCCAAGATTTCTCCCT  400

seq1  TTCTTGCTTCAGCAACAGCAAGGGTAGTCAGAATTTAATCCTGAAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTTCAGCAACAGCAAGGGTAGTCAGAATTTAATCCTGAAAGTTT  450

seq1  GGTTGCTGAGTTTCAACAAGGAAAGCTGGTTCCTGGAAAGGATCTGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGAGTTTCAACAAGGAAAGCTGGTTCCTGGAAAGGATCTGGACA  500

seq1  GAAAAATTAGATTCCAAGCTATATAACTGCTCCTTGCATTCTTAGCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTAGATTCCAAGCTATATAACTGCTCCTTGCATTCTTAGCCAGT  550

seq1  CTCAGTTGAATTC  563
      |||||||||||||
seq2  CTCAGTTGAATTC  563