BAC Information

Click to search

BAC

Clone NameB6Ng01-083E05
Chromosome15 (Build37)
Map Location 68,125,862 - 68,236,936
singlet/doubletdoublet
Overlap geneLOC100041000
Upstream geneZfat1
Downstream geneEG665945, EG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083E05.bB6Ng01-083E05.g
ACCDH897574DH897575
length1,1121,107
definitionDH897574|Mus musculus domesticus DNA, BAC clone: B6Ng01-083E05, 5' end.DH897575|Mus musculus domesticus DNA, BAC clone: B6Ng01-083E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,235,893 - 68,236,936)(68,125,862 - 68,126,991)
sequence
gaattctttctaacttctcatatctctaatttctttctttggtgtcatta
tctccttaactatgtttattccttgtttttcttgaagctgttgttagtag
aattttttcttggtttcttagcaagtgcataaaaagacatgtttgtttct
ggatttatcgtgtatcgctactttgccgaaagtatttactagatctatga
cttttctggtgacctttcataatgacttagaaccatgggacactgactcc
tttcttccttttctttctccctcttctccctgctctgactaagactccag
acactacactgaaagaaagtaggaagagagggcacctttgcttatacttg
cagtagagcagaacgtctcaacatggcagtcgcgactcctttggggtcaa
actatcttttcataggggtcacctaagaccataagaaaacacagaagttt
gcattgcaattcataacagtaaaaatacagttatgaagtagcaatgaaaa
taattttacagttgggggtcaccacaacatgggaaactttattaaagggt
tgcagaattaagaagattgaaacctctactctagaaagaatgcagggggt
ggaggaaggggacagttgttgctgctgtttttggtttggctgttttggtt
gtttttctggttgtctagattactgaattttcctcttcccttcacctctt
attaacaagtgtgttgctttcctgtagtagagatgatttattcctttctg
gctctccttcatcattccattcctctaacaaaactaaattttcctgcagt
tttgtgacactatcttctgccctagtgttcagtgccttaagcatcttttt
caatgccagtgtggctataaactgtcttggtttatggttgtcttgaaatg
tccttatttccccatcaattttagaagatcacttttccggacttagcaat
cttggtcagcagttatttaccttcaggcttaaatatattgttccatgtat
tcctggctattagggtgctagggatattctgttttactcaatttttgccc
ttgtaggttgcacaatgcagcttctccgttggccagagtggcccagatgc
ttcctctcagct
gaattcctaagcaacacatatcagttttatctgctcctgaattattgaaa
tggcattgtgcttcacagtgtttatgatgtacttcctctcagcactgtaa
aattcatcacattgctgcagagaactgaatatttatctccttactttata
gagatgcataccaatattccatacaccaagcctttcacttatttctggat
tttggtaattactaaaaatgttgttcccaatattcttgtcccttttctta
atctatataaacaagtctatctccagggtccatggaatatccacctgtat
tcagtgatatcacagcaaagactttcttgcctcacattcttaccatcaat
taccacataatttctaaatcacttatagcctggcccacattttatattgc
tggactttgggatttttttgccaaacctttgagaatatggttgcatctga
ttctgacttaaattgtctaagtgactaagagactgagtgcttttcatatg
tccatgagccctgtagacatcactttctgtgaggagcattcacctttgac
ctttcctttctctatcatgctttattggtattttttcatttgtttttttt
aacattctttatatattttgcatactggtccttttaaaaattataaacat
tacaattatgtttttctattttatgtcttatacttaaactctttgcatta
tattttgatccgtaggtgagttttcatacttcctactttaccatttttcc
tttatactgtatttttcacacaaataatttaaaaatactaagaaattctc
tcatatgactttctaaaaggttagaattattaagtctttgtcttggtttc
cttacctgctataataaactacctcagagctggggatttataagtacaga
aatgtattgtttaaatctttgaggatccggatccaggagccagcagtgtg
gtgtttggtgggactgtttctgtggacagggctctatatggcatgtggag
agggcaggagctcagtcacatcttctttggaggcccaatgtttcacccta
aaatgtcacactgggttctgtaacagtttctcagactgaaaattcatcct
ctcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_68235893_68236936
seq2: B6Ng01-083E05.b_123_1156 (reverse)

seq1  AGCTGAGAGGAAGGCACTTCTGGGCACATTCTGGGCCAAC-GAGAAGCTG  49
      |||||||||||||   | ||||||| || ||| ||||||| |||||||||
seq2  AGCTGAGAGGAAG---CATCTGGGC-CACTCT-GGCCAACGGAGAAGCTG  45

seq1  CATTTGTGCAACCTACAAGGGCAAAAATTGAGTAAAACCAGAATTATCCC  99
      || |||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  CA-TTGTGCAACCTACAAGGGCAAAAATTGAGTAAAA-CAGAA-TATCCC  92

seq1  TAGCAACCCTAATAGCCAGGAATACATGGAACAATATATTTTAAGCCCTG  149
      |||| ||||||||||||||||||||||||||||||||| |||||| ||||
seq2  TAGC-ACCCTAATAGCCAGGAATACATGGAACAATATA-TTTAAG-CCTG  139

seq1  AAGGTAAATAACTGCTGACCAAGATTGCTAAGTCCGGAAAAGTGATCTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAATAACTGCTGACCAAGATTGCTAAGTCCGGAAAAGTGATCTTC  189

seq1  TAAAATTGATGGGGAAATAAGGACATTTCAAGACAACCATAAACCAAGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGATGGGGAAATAAGGACATTTCAAGACAACCATAAACCAAGAC  239

seq1  AGTTTATAGCCACACTGGCATTGAAAAAGATGCTTAAGGCACTGAACACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAGCCACACTGGCATTGAAAAAGATGCTTAAGGCACTGAACACT  289

seq1  AGGGCAGAAGATAGTGTCACAAAACTGCAGGAAAATTTAGTTTTGTTAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAAGATAGTGTCACAAAACTGCAGGAAAATTTAGTTTTGTTAGA  339

seq1  GGAATGGAATGATGAAGGAGAGCCAGAAAGGAATAAATCATCTCTACTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGAATGATGAAGGAGAGCCAGAAAGGAATAAATCATCTCTACTAC  389

seq1  AGGAAAGCAACACACTTGTTAATAAGAGGTGAAGGGAAGAGGAAAATTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCAACACACTTGTTAATAAGAGGTGAAGGGAAGAGGAAAATTCA  439

seq1  GTAATCTAGACAACCAGAAAAACAACCAAAACAGCCAAACCAAAAACAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTAGACAACCAGAAAAACAACCAAAACAGCCAAACCAAAAACAGC  489

seq1  AGCAACAACTGTCCCCTTCCTCCACCCCCTGCATTCTTTCTAGAGTAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAACTGTCCCCTTCCTCCACCCCCTGCATTCTTTCTAGAGTAGAG  539

seq1  GTTTCAATCTTCTTAATTCTGCAACCCTTTAATAAAGTTTCCCATGTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAATCTTCTTAATTCTGCAACCCTTTAATAAAGTTTCCCATGTTGT  589

seq1  GGTGACCCCCAACTGTAAAATTATTTTCATTGCTACTTCATAACTGTATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCCCCAACTGTAAAATTATTTTCATTGCTACTTCATAACTGTATT  639

seq1  TTTACTGTTATGAATTGCAATGCAAACTTCTGTGTTTTCTTATGGTCTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTTATGAATTGCAATGCAAACTTCTGTGTTTTCTTATGGTCTTA  689

seq1  GGTGACCCCTATGAAAAGATAGTTTGACCCCAAAGGAGTCGCGACTGCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCCCTATGAAAAGATAGTTTGACCCCAAAGGAGTCGCGACTGCCA  739

seq1  TGTTGAGACGTTCTGCTCTACTGCAAGTATAAGCAAAGGTGCCCTCTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGACGTTCTGCTCTACTGCAAGTATAAGCAAAGGTGCCCTCTCTT  789

seq1  CCTACTTTCTTTCAGTGTAGTGTCTGGAGTCTTAGTCAGAGCAGGGAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTCTTTCAGTGTAGTGTCTGGAGTCTTAGTCAGAGCAGGGAGAA  839

seq1  GAGGGAGAAAGAAAAGGAAGAAAGGAGTCAGTGTCCCATGGTTCTAAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAAAGAAAAGGAAGAAAGGAGTCAGTGTCCCATGGTTCTAAGTC  889

seq1  ATTATGAAAGGTCACCAGAAAAGTCATAGATCTAGTAAATACTTTCGGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAAGGTCACCAGAAAAGTCATAGATCTAGTAAATACTTTCGGCA  939

seq1  AAGTAGCGATACACGATAAATCCAGAAACAAACATGTCTTTTTATGCACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCGATACACGATAAATCCAGAAACAAACATGTCTTTTTATGCACT  989

seq1  TGCTAAGAAACCAAGAAAAAATTCTACTAACAACAGCTTCAAGAA  1044
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGAAACCAAGAAAAAATTCTACTAACAACAGCTTCAAGAA  1034

seq1: chr15_68125862_68126991
seq2: B6Ng01-083E05.g_67_1173

seq1  GAATTCCTAAGCAACACATATCAGTTTTATCTGCTCCTGAATTATTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGCAACACATATCAGTTTTATCTGCTCCTGAATTATTGAAA  50

seq1  TGGCATTGTGCTTCACAGTGTTTATGATGTACTTCCTCTCAGCACTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGTGCTTCACAGTGTTTATGATGTACTTCCTCTCAGCACTGTAA  100

seq1  AATTCATCACATTGCTGCAGAGAACTGAATATTTATCTCCTTACTTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCACATTGCTGCAGAGAACTGAATATTTATCTCCTTACTTTATA  150

seq1  GAGATGCATACCAATATTCCATACACCAAGCCTTTCACTTATTTCTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCATACCAATATTCCATACACCAAGCCTTTCACTTATTTCTGGAT  200

seq1  TTTGGTAATTACTAAAAATGTTGTTCCCAATATTCTTGTCCCTTTTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAATTACTAAAAATGTTGTTCCCAATATTCTTGTCCCTTTTCTTA  250

seq1  ATCTATATAAACAAGTCTATCTCCAGGGTCCATGGAATATCCACCTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATAAACAAGTCTATCTCCAGGGTCCATGGAATATCCACCTGTAT  300

seq1  TCAGTGATATCACAGCAAAGACTTTCTTGCCTCACATTCTTACCATCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATATCACAGCAAAGACTTTCTTGCCTCACATTCTTACCATCAAT  350

seq1  TACCACATAATTTCTAAATCACTTATAGCCTGGCCCACATTTTATATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATAATTTCTAAATCACTTATAGCCTGGCCCACATTTTATATTGC  400

seq1  TGGACTTTGGGATTTTTTTGCCAAACCTTTGAGAATATGGTTGCATCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTGGGATTTTTTTGCCAAACCTTTGAGAATATGGTTGCATCTGA  450

seq1  TTCTGACTTAAATTGTCTAAGTGACTAAGAGACTGAGTGCTTTTCATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTAAATTGTCTAAGTGACTAAGAGACTGAGTGCTTTTCATATG  500

seq1  TCCATGAGCCCTGTAGACATCACTTTCTGTGAGGAGCATTCACCTTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGCCCTGTAGACATCACTTTCTGTGAGGAGCATTCACCTTTGAC  550

seq1  CTTTCCTTTCTCTATCATGCTTTATTGGTATTTTTTCATTTGTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCTCTATCATGCTTTATTGGTATTTTTTCATTTGTTTTTTTT  600

seq1  AACATTCTTTATATATTTTGCATACTGGTCCTTTTAAAAATTATAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTTTATATATTTTGCATACTGGTCCTTTTAAAAATTATAAACAT  650

seq1  TACAATTATGTTTTTCTATTTTATGTCTTATACTTAAACTCTTTGCATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATGTTTTTCTATTTTATGTCTTATACTTAAACTCTTTGCATTA  700

seq1  TATTTTGATCCGTAGGTGAGTTTTCATACTTCCTACTTTACCATTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATCCGTAGGTGAGTTTTCATACTTCCTACTTTACCATTTTTCC  750

seq1  TTTATACTGTATTTTTCACACAAATAATTTAAAAATACTAAGAAATTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTGTATTTTTCACACAAATAATTTAAAAATACTAAGAAATTCTC  800

seq1  TCATATGACTTTCTAAAAGGTTAGAATTATTAAGTCTTTGTCTTGGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGACTTTCTAAAAGGTTAGAATTATTAAGTCTTTGTCTTGGTTTC  850

seq1  CTTACCTGCTATAATAAACTACCTCAGAGCTGGGGATTTATAAGTAACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTACCTGCTATAATAAACTACCTCAGAGCTGGGGATTTATAAGT-ACAG  899

seq1  AAATGTATTGTTTAAATCTTTGAAGGATCCGGATCCAGGAGCCAGCAGTG  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATGTATTGTTTAAATCTTTG-AGGATCCGGATCCAGGAGCCAGCAGTG  948

seq1  TTGGTGTTTGGTGGGAACCTGTTTCCTGTGGACAGGGCCCCTATATGGCC  1000
       |||||||||||||||  |||||| |||||||||||| | |||||||| |
seq2  -TGGTGTTTGGTGGGA--CTGTTT-CTGTGGACAGGG-CTCTATATGG-C  992

seq1  ATGTGGAAGAAGGGGCAAGGGAGCTCAGTCACATCTCTTTGGGAGGGCCC  1050
      |||||| |||  |||||  |||||||||||||||||  || |||||   |
seq2  ATGTGG-AGA--GGGCA--GGAGCTCAGTCACATCTTCTTTGGAGG---C  1034

seq1  CAAATGTTTTCACCCCTAAAAATGTCACACTGGGTTCTGTAACAGTTTCC  1100
      | |||| ||||||||   |||||||||||||||||||||||||||||| |
seq2  CCAATG-TTTCACCC--TAAAATGTCACACTGGGTTCTGTAACAGTTT-C  1080

seq1  TCCAAGACTGAAATATTTCATCCT-TCAGAG  1130
      ||  ||||||||  | |||||||| ||||||
seq2  TC--AGACTGAA--AATTCATCCTCTCAGAG  1107