BAC Information

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BAC

Clone NameB6Ng01-083H20
Chromosome15 (Build37)
Map Location 30,121,508 - 30,267,882
singlet/doubletdoublet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083H20.bB6Ng01-083H20.g
ACCDH897738DH897739
length1,1471,090
definitionDH897738|Mus musculus domesticus DNA, BAC clone: B6Ng01-083H20, 5' end.DH897739|Mus musculus domesticus DNA, BAC clone: B6Ng01-083H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,266,735 - 30,267,882)(30,121,508 - 30,122,622)
sequence
gaattctatttgttcacttcttactctgagaaaaccactcacaaggcatt
gacttttacacgccaggagttcgggctttgttgtcttgctcgaggccttt
atctgtaattaattatgatatattttcccagtgagtctgtaagggtcatt
aaactcttttttttttcaaaactttgctgccggcagcctctgtcgaaaca
gacccaatgacttgcgtacaaggaagtatgacatgctgttgactttttca
tgctaacaaaataggaacaaccaaaaagaccaacaatgctataaaattca
aataaatttatactattaaatgattcacagtgattccatatttcatatct
agtagaaaatggttaaaatgaacatttgatgatatcaaaaacaccactga
tgccttaaatgaacaaagatagtttaaaatagttatcaagtgaagcaaag
cattgtaaccccacaatcccattttcatttaaatctcagagaaggaaatc
ttggtaagtatttgtagatttcccataatctgcaagagttgtcttcatca
tagaaccataaaacactgaaatatcacacttaaaatatttaatgtgattt
cacaggatagatatttaacaatgatttcttttgaaaaatatgacagaata
atgaggggcgctaaaacatttttcaaaaccctacatgctaataaatgctt
ccttcccagctagcaggcgaggctgcatcgtctcatctccagtgctgtgt
gaaccccacaactaacagtttcagagaaaggggtacaagccagtccaatg
agttcactcttagaatggagctgaggttttcaacgtgatgagcagataca
gaaatgtcttgaggagagatgtactgggaaactttttgagaaaatatgtt
ttaagagacaaagagaaaatacctcaggggaagcaacagagtacgcctaa
ggagctgagaatgctgtggagtcaaggacgtgtccacagttttagaggtg
aggtgtctcatgactgatgctggtagcaaaacatcccaagtccctaatag
cctgttacccctatttctcctcatttctaggcttgccatccctgactgga
tgcacaaatcagtagctcatccttcttgacattttctgactacattc
gaattcctagagcttaagttacaggaggttatgtgctatcatgtgggtgc
tggcaaccaaacatgccctctgcaagaagagtaagtacccttagctgttg
agccgtcttccagccccagtagatttgatatttgaacattcacgaagacc
tagcatattgtctcatttgatagaagcaatggatcacatccaggaacact
tgctcagtttaaacatctccttcctctctcacttcctcttgctcacctct
acctgcatcttgctcgcctgtcacatggacctcaagaatggtggtttagc
aatcacgtgtccctgctacacttggcatctacctcaccctccctctgtca
tgctggcatagtctccatggcaaccccaggctgctccacaggcagctggc
catgctggatagctgatgctggctggcagaagcgatcaaagagtgagggg
gccttgaagagccatggaaaaagcttctggtgaaattgtaacgactgaat
tggggaaaaaatgttattaatttgagctagtccagctcatggtgaggttc
ccaggggagacccatctaccatctgcatcttgcaaataatagtattccca
aatctccatgcttcttccatggtgggtttactttgtttttatatatatgg
atggcagattgaacactgagcaagggccagtggctgttctgggctgttgc
cacttccttagtgtacacacttcagagtcatttgaatcacttcttctttg
tataaggtctggactacagaacagcctcaaacatttgctggtcctgtgtc
ctttgggcattggtcctcaagatgggaggcaagtttcagaaaaaactgcc
agttctttgcgctctcttcaccttgcttgcttgactgacctttctccaag
agcccatcccagagacagctaacaaatgcttacagaatggcacaacgtgt
gagattgagagcaagagcgtgggagacactgtttggggactgcgtcagac
atgtacagtagtatatgcagctatagtaaatccctgcatccatttgtgct
ctgggcccctcagtgatagcgctgtgtttcaaacaagcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_30266735_30267882
seq2: B6Ng01-083H20.b_44_1190 (reverse)

seq1  GAATGTAGTCAGAAAATGTC-AGAAGGATGAGCCTACTGATTTGTGCAT-  48
      |||||||||||||||||||| ||||||||||| |||||||||||||||| 
seq2  GAATGTAGTCAGAAAATGTCAAGAAGGATGAG-CTACTGATTTGTGCATC  49

seq1  CAGTCAGGGGATGGGCAAGCCTAGAAATGAGGGAGAAATAGGGGTAACAG  98
      |||||| ||||| ||||||||||||||||| |||||||||||||||||||
seq2  CAGTCA-GGGAT-GGCAAGCCTAGAAATGA-GGAGAAATAGGGGTAACAG  96

seq1  GCTATTAGGGACTTGGGATGTTTTGCTACCAGCATCAGTCATGAGACA-C  147
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTATTAGGGACTTGGGATGTTTTGCTACCAGCATCAGTCATGAGACACC  146

seq1  TCA-CTCTAAAACTGTGGACACGTCCTTGACTCCACAGCATTCTCAGCTC  196
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCACCTCTAAAACTGTGGACACGTCCTTGACTCCACAGCATTCTCAGCT-  195

seq1  CCTTAGGCGTACTCTGTTGCTTCCCCTGAGGTATTTTCTCTTTGTCTCTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGCGTACTCTGTTGCTTCCCCTGAGGTATTTTCTCTTTGTCTCTT  245

seq1  AAAACATATTTTCTCAAAAAGTTTCCCAGTACATCTCTCCTCAAGACATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATATTTTCTCAAAAAGTTTCCCAGTACATCTCTCCTCAAGACATT  295

seq1  TCTGTATCTGCTCATCACGTTGAAAACCTCAGCTCCATTCTAAGAGTGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCTGCTCATCACGTTGAAAACCTCAGCTCCATTCTAAGAGTGAA  345

seq1  CTCATTGGACTGGCTTGTACCCCTTTCTCTGAAACTGTTAGTTGTGGGGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGGACTGGCTTGTACCCCTTTCTCTGAAACTGTTAGTTGTGGGGT  395

seq1  TCACACAGCACTGGAGATGAGACGATGCAGCCTCGCCTGCTAGCTGGGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGCACTGGAGATGAGACGATGCAGCCTCGCCTGCTAGCTGGGAA  445

seq1  GGAAGCATTTATTAGCATGTAGGGTTTTGAAAAATGTTTTAGCGCCCCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATTTATTAGCATGTAGGGTTTTGAAAAATGTTTTAGCGCCCCTC  495

seq1  ATTATTCTGTCATATTTTTCAAAAGAAATCATTGTTAAATATCTATCCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTGTCATATTTTTCAAAAGAAATCATTGTTAAATATCTATCCTG  545

seq1  TGAAATCACATTAAATATTTTAAGTGTGATATTTCAGTGTTTTATGGTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCACATTAAATATTTTAAGTGTGATATTTCAGTGTTTTATGGTTC  595

seq1  TATGATGAAGACAACTCTTGCAGATTATGGGAAATCTACAAATACTTACC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGAAGACAACTCTTGCAGATTATGGGAAATCTACAAATACTTACC  645

seq1  AAGATTTCCTTCTCTGAGATTTAAATGAAAATGGGATTGTGGGGTTACAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCCTTCTCTGAGATTTAAATGAAAATGGGATTGTGGGGTTACAA  695

seq1  TGCTTTGCTTCACTTGATAACTATTTTAAACTATCTTTGTTCATTTAAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCTTCACTTGATAACTATTTTAAACTATCTTTGTTCATTTAAGG  745

seq1  CATCAGTGGTGTTTTTGATATCATCAAATGTTCATTTTAACCATTTTCTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGGTGTTTTTGATATCATCAAATGTTCATTTTAACCATTTTCTA  795

seq1  CTAGATATGAAATATGGAATCACTGTGAATCATTTAATAGTATAAATTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATGAAATATGGAATCACTGTGAATCATTTAATAGTATAAATTTA  845

seq1  TTTGAATTTTATAGCATTGTTGGTCTTTTTGGTTGTTCCTATTTTGTTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTTATAGCATTGTTGGTCTTTTTGGTTGTTCCTATTTTGTTAG  895

seq1  CATGAAAAAGTCAACAGCATGTCATACTTCCTTGTACGCAAGTCATTGGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAAGTCAACAGCATGTCATACTTCCTTGTACGCAAGTCATTGGG  945

seq1  TCTGTTTCGACAGAGGCTGCCGGCAGCAAAGTTTTGAAAAAAAAAAGAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCGACAGAGGCTGCCGGCAGCAAAGTTTTGAAAAAAAAAAGAGT  995

seq1  TTAATGACCCTTACAGACTCACTGGGAAAATATATCATAATTAATTACAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACCCTTACAGACTCACTGGGAAAATATATCATAATTAATTACAG  1045

seq1  ATAAAGGCCTCGAGCAAGACAACAAAGCCCGAACTCCTGGCGTGTAAAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGCCTCGAGCAAGACAACAAAGCCCGAACTCCTGGCGTGTAAAAG  1095

seq1  TCAATGCCTTGTGAGTGGTTTTCTCAGAGTAAGAAGTGAACAAATAGAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCCTTGTGAGTGGTTTTCTCAGAGTAAGAAGTGAACAAATAGAAT  1145

seq1  TC  1148
      ||
seq2  TC  1147

seq1: chr15_30121508_30122622
seq2: B6Ng01-083H20.g_68_1157

seq1  GAATTCCTAGAGCTTAAGTTACAGGAGGTTATGTGCTATCATGTGGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAGCTTAAGTTACAGGAGGTTATGTGCTATCATGTGGGTGC  50

seq1  TGGCAACCAAACATGCCCTCTGCAAGAAGAGTAAGTACCCTTAGCTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACCAAACATGCCCTCTGCAAGAAGAGTAAGTACCCTTAGCTGTTG  100

seq1  AGCCGTCTTCCAGCCCCAGTAGATTTGATATTTGAACATTCACGAAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTCTTCCAGCCCCAGTAGATTTGATATTTGAACATTCACGAAGACC  150

seq1  TAGCATATTGTCTCATTTGATAGAAGCAATGGATCACATCCAGGAACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATTGTCTCATTTGATAGAAGCAATGGATCACATCCAGGAACACT  200

seq1  TGCTCAGTTTAAACATCTCCTTCCTCTCTCACTTCCTCTTGCTCACCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTTTAAACATCTCCTTCCTCTCTCACTTCCTCTTGCTCACCTCT  250

seq1  ACCTGCATCTTGCTCGCCTGTCACATGGACCTCAAGAATGGTGGTTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATCTTGCTCGCCTGTCACATGGACCTCAAGAATGGTGGTTTAGC  300

seq1  AATCACGTGTCCCTGCTACACTTGGCATCTACCTCACCCTCCCTCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGTGTCCCTGCTACACTTGGCATCTACCTCACCCTCCCTCTGTCA  350

seq1  TGCTGGCATAGTCTCCATGGCAACCCCAGGCTGCTCCACAGGCAGCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCATAGTCTCCATGGCAACCCCAGGCTGCTCCACAGGCAGCTGGC  400

seq1  CATGCTGGATAGCTGATGCTGGCTGGCAGAAGCGATCAAAGAGTGAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGATAGCTGATGCTGGCTGGCAGAAGCGATCAAAGAGTGAGGGG  450

seq1  GCCTTGAAGAGCCATGGAAAAAGCTTCTGGTGAAATTGTAACGACTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAAGAGCCATGGAAAAAGCTTCTGGTGAAATTGTAACGACTGAAT  500

seq1  TGGGGAAAAAATGTTATTAATTTGAGCTAGTCCAGCTCATGGTGAGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAAAATGTTATTAATTTGAGCTAGTCCAGCTCATGGTGAGGTTC  550

seq1  CCAGGGGAGACCCATCTACCATCTGCATCTTGCAAATAATAGTATTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAGACCCATCTACCATCTGCATCTTGCAAATAATAGTATTCCCA  600

seq1  AATCTCCATGCTTCTTCCATGGTGGGTTTACTTTGTTTTTATATATATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCATGCTTCTTCCATGGTGGGTTTACTTTGTTTTTATATATATGG  650

seq1  ATGGCAGATTGAACACTGAGCAAGGGCCAGTGGCTGTTCTGGGCTGTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGATTGAACACTGAGCAAGGGCCAGTGGCTGTTCTGGGCTGTTGC  700

seq1  CACTTCCTTAGTGTACACACTTCAGAGTCATTTGAATCACTTCTTCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTTAGTGTACACACTTCAGAGTCATTTGAATCACTTCTTCTTTG  750

seq1  TATAAGGTCTGGACTACAGAACAGCCTCAAACATTTGCTGGTCCTGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTCTGGACTACAGAACAGCCTCAAACATTTGCTGGTCCTGTGTC  800

seq1  CTTTGGGCATTGGTCCTCAAGATGGGAGGCAAGTTTCAGAAAAAACTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGCATTGGTCCTCAAGATGGGAGGCAAGTTTCAGAAAAAACTGCC  850

seq1  AGTTCTTTGCGCTCTCTTCAACCTTGCTTGCTTGACTGACCTTTCTCCAA  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTTCTTTGCGCTCTCTTC-ACCTTGCTTGCTTGACTGACCTTTCTCCAA  899

seq1  GGAGCCCATCCCAGAGACAAGCTAACAAATGCTTACAAGAAATGGCACAA  950
       ||||||||||||||||| ||||||||||||||||||   ||||||||||
seq2  -GAGCCCATCCCAGAGAC-AGCTAACAAATGCTTACA--GAATGGCACAA  945

seq1  CGTGGTGAAGATTGAGAGCAAAGAGCGGTGGGGAGACACTGTTTGGGGAC  1000
      ||| ||| ||||||||||| |||||||   ||||||||||||||||||||
seq2  CGT-GTG-AGATTGAGAGC-AAGAGCG--TGGGAGACACTGTTTGGGGAC  990

seq1  TGCGTCCAAGGACAATGTACAGTAGTTATATTGCAGCTTATAGTAAATTC  1050
      ||||||    ||| ||||||||||| |||| |||||| ||||||||| ||
seq2  TGCGTC---AGAC-ATGTACAGTAG-TATA-TGCAGC-TATAGTAAA-TC  1032

seq1  CCTGCATCCATTTGTTGCTCTGGGCCTCTCAGTGGATAGCGCTGTTGTTT  1100
      |||||||||||||| ||||||||||| |||||| ||||||||   ||| |
seq2  CCTGCATCCATTTG-TGCTCTGGGCCCCTCAGT-GATAGCGC---TGTGT  1077

seq1  TTCAAAACAAAGCGA  1115
      ||||||   ||||||
seq2  TTCAAA--CAAGCGA  1090