BAC Information

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BAC

Clone NameB6Ng01-083N15
Chromosome5 (Build37)15 (Build37)
Map Location 18,084,511 - 18,084,57565,090,036 - 65,090,683
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083N15.bB6Ng01-083N15.g
ACCDH897997DH897998
length8551,113
definitionDH897997|Mus musculus domesticus DNA, BAC clone: B6Ng01-083N15, 5' end.DH897998|Mus musculus domesticus DNA, BAC clone: B6Ng01-083N15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,575)(65,090,036 - 65,090,683)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaaaactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcagacaatatgtattcactgataagtggatattagcccaaaacc
taggatacccaagatataagatataatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagatatgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagatttgctgaaag
gaccc
gaattcctagtgggcacacctattggattccagaaaaacttcttaccgga
caacatacagccaacaaactctcctaagaaccagacatggcaacagaaac
caagaaacaaagacacccaacaatgacaagactagatatcagcatgtaga
attacagtcttcccaagcccatatgcccagagggagaaaagtagggcatt
agggagggaatcccaggagatatagctaaaaattaagggacatttgaagg
gtaggattgaaactagtatgctagaagtttcctaaaactcatacatataa
aagggagatctaaatgaagttgccaaataatgtgagaggcagactgtcaa
ctaaccatcttttgtcgtcaaatgaaacttccagtaccaagattgggtta
catctacttggtcaaaggggtccataaatatccttaaataacccagggta
ttgttgtgggcttagggtagccttctactgttattttattacatgggaat
gttgataatgtgccttctaaatatttgtgtttatactcatgaactagtgc
tgctcttaagtttggtcagagggcattatttttgcaatgacatgtaaaag
taacatttatccacctgaagtgattgtcatctttgagacttactgatgaa
taagttcacattttccatctagttctttctgaactttgactgaaaagtcc
tactcagcagttctggctcaaacttctctccatgctaactgattcaaact
gacttctcttagcttttgacttcttgctctgctcggccttaaattaactc
tagaaaactgttctaatcttatgactccttcttattctctggcttcactt
gcctctgctaactgctggaactcatctccaatatactgacaaactgaact
caactgcctcagttgactgaactgaattcaactcaactgtctcaattgac
tgaactcactcaactgaactcaactcaattgcaagtggcctgtattcaaa
tgcagattcccactacttaaatatgatttagtgtgatttgtttaatgctt
gtttgtgtgtggtcccaaatgcatgagaatccaccatgtaagatgctgag
atctgtccagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084575
seq2: B6Ng01-083N15.b_365_429 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      |||||||||||||||
seq2  CTTCTTACCAGTTGG  65

seq1: chr15_65090036_65090683
seq2: B6Ng01-083N15.g_552_1181

seq1  TTTTATTACATGGGAATGTTGATAATGTGCCTTCTAAATATTTGTGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTACATGGGAATGTTGATAATGTGCCTTCTAAATATTTGTGTTTA  50

seq1  TACTCATGAACTAGTGCTGCTCTTAAGTTTGGTCAGAGGGCATTATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGAACTAGTGCTGCTCTTAAGTTTGGTCAGAGGGCATTATTTTT  100

seq1  GCAATGACATGTAAAAGTAACATTTATCCACCTGAAGTGATTGTCATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGACATGTAAAAGTAACATTTATCCACCTGAAGTGATTGTCATCTT  150

seq1  TGAGACTTACTGATGAATAAGTTCACATTTTCCATCTAGTTCTTTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTTACTGATGAATAAGTTCACATTTTCCATCTAGTTCTTTCTGAA  200

seq1  CTTTGACTGAAAAGTCCTACTCAGCAGTTCTGGCTCAAACTTCTCTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTGAAAAGTCCTACTCAGCAGTTCTGGCTCAAACTTCTCTCCAT  250

seq1  GCTAACTGATTCAAACTGACTTCTCTTAGCTTTTGACTTCTTGCTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTGATTCAAACTGACTTCTCTTAGCTTTTGACTTCTTGCTCTGCT  300

seq1  CGGCCTTAAATTAACTCTAGAAAACTGTTCTAATCTTATGACTCCTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTTAAATTAACTCTAGAAAACTGTTCTAATCTTATGACTCCTTCTT  350

seq1  ATTCTCTGGCTTCACTTGCCTCTGCTAACTGCTGGAACTCATCTCCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGGCTTCACTTGCCTCTGCTAACTGCTGGAACTCATCTCCAATA  400

seq1  TACTGACAAACTGAACTCAACTGCCTCAGTTGACTGAACTGAATTCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACAAACTGAACTCAACTGCCTCAGTTGACTGAACTGAATTCAACT  450

seq1  CAACTGTCTCAATTGACTGAACTCAACTCAACTGAACTCAACTCAATTGC  500
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAACTGTCTCAATTGACTGAACTC-ACTCAACTGAACTCAACTCAATTGC  499

seq1  AAGTGGCCTGTATTCAAATGCAGATTCCCAACTACTTAAATATGAATTTA  550
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  AAGTGGCCTGTATTCAAATGCAGATTCCC-ACTACTTAAATATG-ATTTA  547

seq1  GTTGTGGATTTGGTTTAATGCTTGTATTGTGTTGTTTGGGTTCCCAAATT  600
      | ||| ||||| |||||||||||||      |||| || | ||||||| |
seq2  G-TGT-GATTT-GTTTAATGCTTGT------TTGTGTGTGGTCCCAAA-T  587

seq1  GCATGAGAATCCCACATGTAAGATGCTGAGGGTTCCTGTCCCCAGCTG  648
      ||||||||||||  ||||||||||||||||     ||||  |||||||
seq2  GCATGAGAATCCACCATGTAAGATGCTGAG---ATCTGT--CCAGCTG  630