BAC Information

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BAC

Clone NameB6Ng01-084I19
Chromosome15 (Build37)
Map Location 16,272,478 - 16,396,529
singlet/doubletdoublet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084I19.bB6Ng01-084I19.g
ACCDH898471DH898472
length1,1881,143
definitionDH898471|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I19, 5' end.DH898472|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,272,478 - 16,273,686)(16,395,384 - 16,396,529)
sequence
gaattcaagtgtcatactaataagaaggttggaaaacactggtttaggat
atcaaataaccaaaataaagaaggtaaaaagaagccttacaaaaatgctc
tagttggtagtctaattcacaacacaattagtaacaacaacaaaacaaaa
caaaatttttcgaacaacaacacaaaccccactgctatgaggtaacctac
aggggtgaacaatgctgatcccagaagacatgagtggttaaatgaaaatc
acagtgccaatacagattccaagattgcatacctatgaattattcatcgc
cgaatcttcagaggtctgtacataagacaaactcttgctattattcttgg
ttgcctgtcacaactttgttgtaagaagcttttgctctggacatacacct
gttgtaggatacagtgaaagcaatcttactctgaccaatacactctttta
ctgttggttaactctcacaagtctggaaaaggtttacgaagacttcttgg
ggagaaaagacatcgatggtcttacccataaataatgggctcaatagatg
gactcattggttgttgaaaaaataagggcacgtggtaatggaagggaggt
gtgctggcaatagttttatggagagtcactgggaaacttgatatgaccaa
gatacaatatataaaagcatgaaacgttaaagataattaataattttttt
aaaaaatgcacatactagaaagaagaaaaataccgaaggtttcaatatga
aatcttttaaattacagtataatttgcagataatttatttgaattcaagt
aagattaactgttatagacagtacatttttatattagtaattttataata
aacttaaatatgttatctgctaccaaattgtaatggttgattaatcatgc
atggttttctattcttaataattttaattagtttcagatgatatctgtga
ctttatttgtgctccataaaataaatgtgatataattttactatttataa
tatataaatcatattgtgactattttaaatcaaacaaatagaaaattatg
ttgtatttaacagtctctacatatgcatccaaccaagacttacatatatt
aatttaaataactagtaatctttataatgctacgataatttcattgcatg
catacatgaagagaaaatgaataatgcctaataaagaa
gaattcaataatttttgtttaatggttctgttctattaatagaagtttaa
tgatacattttaacctttgagaaatgagagtagattaaatggatcatgat
gcatattggatacttagatgtttttgttgcctgctccgatgatggctttc
actccagtaagcttcaagttccttagcataaccagctgttgatccctgtg
cagtgcagtgctgaactatattaatcaatgggttagatgcaacatgcatt
ttgtaattaagatgtcttccacttaccatatatcaactataagcccattt
tgagctcaagagcaccttttcttttattaaataaatacctaccaataatc
actaatccattccctcagatgtatagatgaagattacagacaagacttcc
agaaacgtagaatgaattgatgcaaaattagatagcaatggatgctagga
gaaaaagctggggttttagtgagtgagatggacagagagtagctattatt
gagtgttctgatcagatctctgtgaaatatggcattttaattaaggcctt
tatgaaaaacagaaatatcttgtcagaactgggcaagagatctccttgag
gtatttctgttgatgaggctcacttatgccctatattggataatcttaaa
tacattctaaggtttctctttttagtttatgttaatttcaggttgcattt
ataataaatgcctgcaaaaaaaatcatactgctttttacttaaaaggtag
aaagcattactttatactgaaaaagtgcaaaaagacaagaaataataaaa
ttaagtaatttttccaatcatgataaaaacaactttatctgacaatatga
gtcaaaaatagacaattttaattctcttaatacttagtcaatatttctag
ttgttatgtaatgtgttatgttttgtaatgcctgtcatcaatctttttta
tctttttctgtatgtcttcaaatctgtactttttgatgttttattgtatt
tgattttataaccatgggaataaattttgcttttgaggaactaattcctt
cttacacagttttatgctacataatgtatcatctggagacataggagaac
aagtctaaaatttacctgtctggttaatttagaaggttaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16272478_16273686
seq2: B6Ng01-084I19.b_46_1233

seq1  GAATTCAAGTGTCATACTAATAAGAAGGTTGGAAAACACTGGTTTAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGTCATACTAATAAGAAGGTTGGAAAACACTGGTTTAGGAT  50

seq1  ATCAAATAACCAAAATAAAGAAGGTAAAAAGAAGCCTTACAAAAATGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAACCAAAATAAAGAAGGTAAAAAGAAGCCTTACAAAAATGCTC  100

seq1  TAGTTGGTAGTCTAATTCACAACACAATTAGTAACAACAACAAAACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGTAGTCTAATTCACAACACAATTAGTAACAACAACAAAACAAAA  150

seq1  CAAAATTTTTCGAACAACAACACAAACCCCACTGCTATGAGGTAACCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTTTCGAACAACAACACAAACCCCACTGCTATGAGGTAACCTAC  200

seq1  AGGGGTGAACAATGCTGATCCCAGAAGACATGAGTGGTTAAATGAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGAACAATGCTGATCCCAGAAGACATGAGTGGTTAAATGAAAATC  250

seq1  ACAGTGCCAATACAGATTCCAAGATTGCATACCTATGAATTATTCATCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCCAATACAGATTCCAAGATTGCATACCTATGAATTATTCATCGC  300

seq1  CGAATCTTCAGAGGTCTGTACATAAGACAAACTCTTGCTATTATTCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCTTCAGAGGTCTGTACATAAGACAAACTCTTGCTATTATTCTTGG  350

seq1  TTGCCTGTCACAACTTTGTTGTAAGAAGCTTTTGCTCTGGACATACACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTCACAACTTTGTTGTAAGAAGCTTTTGCTCTGGACATACACCT  400

seq1  GTTGTAGGATACAGTGAAAGCAATCTTACTCTGACCAATACACTCTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGGATACAGTGAAAGCAATCTTACTCTGACCAATACACTCTTTTA  450

seq1  CTGTTGGTTAACTCTCACAAGTCTGGAAAAGGTTTACGAAGACTTCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTTAACTCTCACAAGTCTGGAAAAGGTTTACGAAGACTTCTTGG  500

seq1  GGAGAAAAGACATCGATGGTCTTACCCATAAATAATGGGCTCAATAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAGACATCGATGGTCTTACCCATAAATAATGGGCTCAATAGATG  550

seq1  GACTCATTGGTTGTTGAAAAAATAAGGGCACGTGGTAATGGAAGGGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATTGGTTGTTGAAAAAATAAGGGCACGTGGTAATGGAAGGGAGGT  600

seq1  GTGCTGGCAATAGTTTTATGGAGAGTCACTGGGAAACTTGATATGACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGCAATAGTTTTATGGAGAGTCACTGGGAAACTTGATATGACCAA  650

seq1  GATACAATATATAAAAGCATGAAACGTTAAAGATAATTAATAATTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAATATATAAAAGCATGAAACGTTAAAGATAATTAATAATTTTTTT  700

seq1  AAAAAATGCACATACTAGAAAGAAGAAAAATACCGAAGGTTTCAATATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGCACATACTAGAAAGAAGAAAAATACCGAAGGTTTCAATATGA  750

seq1  AATCTTTTAAATTACAGTATAATTTGCAGATAATTTATTTGAATTCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTAAATTACAGTATAATTTGCAGATAATTTATTTGAATTCAAGT  800

seq1  AAGATTAACTGTTATAGACAGTACATTTTTATATTAGTAATTTTATAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAACTGTTATAGACAGTACATTTTTATATTAGTAATTTTATAATA  850

seq1  AACTTAAATATGTTATCTGCTACCAAATTGTAATGGTTGATTAATCATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATATGTTATCTGCTACCAAATTGTAATGGTTGATTAATCATGC  900

seq1  ATGGTTTTCTATTCTTAATAATTTTAATTAGTTTCAGATGATATCTGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTCTATTCTTAATAATTTTAATTAGTTTCAGATGATATCTGTGA  950

seq1  CTTTATTTGTGCTCCATAAAATAAAATTGTGATAATAATTTTACTATTTA  1000
      |||||||||||||||||||||||||  |||||| ||||||||||||||||
seq2  CTTTATTTGTGCTCCATAAAATAAA--TGTGAT-ATAATTTTACTATTTA  997

seq1  TAATAATATAAATCATATTGTGACTATTTTAAATCACACAAATAGAAAAT  1050
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAT-ATATAAATCATATTGTGACTATTTTAAATCAAACAAATAGAAAAT  1046

seq1  TATGTTGTATTTAAACAGTCTCTACATATGCATCCAACACAGACTTTACA  1100
      |||||||||||| |||||||||||||||||||||||||  |||| |||||
seq2  TATGTTGTATTT-AACAGTCTCTACATATGCATCCAACCAAGAC-TTACA  1094

seq1  TATATTAAATTTAAAATACTAGTAAATTCTTTATAATGCTTACGATAATT  1150
      |||||| ||||||||  ||||||||  |||||||||||| ||||||||||
seq2  TATATT-AATTTAAATAACTAGTAA--TCTTTATAATGC-TACGATAATT  1140

seq1  TCATTGCTATGCAAATTACATGAAAGAAAAAATGAAAATAATGCCTAAAA  1200
      ||||||| |||||   |||||| |||| ||||||  |||||||||||   
seq2  TCATTGC-ATGCA---TACATG-AAGAGAAAATG--AATAATGCCTA---  1180

seq1  TAAAAAGAA  1209
       | ||||||
seq2  -ATAAAGAA  1188

seq1: chr15_16395384_16396529
seq2: B6Ng01-084I19.g_71_1213 (reverse)

seq1  CCCTTAACATTCTAAATTTAACCAAGACAAGTAAATTTTAGACTTGTGTC  50
      |||||||| ||||||| |||||| ||||| ||||||||||||||||| ||
seq2  CCCTTAACCTTCTAAA-TTAACC-AGACAGGTAAATTTTAGACTTGT-TC  47

seq1  TCCTATGGTCTCAAGATGATCAATTTATGTAGCCATAAACTGTTGTAAGA  100
      |||||| ||||| ||||||| |  |||||||||   |||||| |||||||
seq2  TCCTAT-GTCTCCAGATGAT-ACATTATGTAGCATAAAACTG-TGTAAGA  94

seq1  AGAATTTAGTT-CTCAAAAGCAGAATTTATT-CCATGGTTATAAAATCAA  148
      || | |||||| |||||||||| |||||||| ||||||||||||||||||
seq2  AGGAATTAGTTCCTCAAAAGCAAAATTTATTCCCATGGTTATAAAATCAA  144

seq1  ATACAAT-AAACATCAAAAAGTACAGATTTG-AGACATACAAGAAAAGAT  196
      ||||||| ||||||||||||||||||||||| |||||||||  |||||||
seq2  ATACAATAAAACATCAAAAAGTACAGATTTGAAGACATACAGAAAAAGAT  194

seq1  AAAAAAAGATTGATGACAGGCATTACAAAACATAACACATTACATAACAA  246
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAAAAGATTGATGACAGGCATTACAAAACATAACACATTACATAACAA  243

seq1  CTAGAAATATTGACTAAGTATTAAGAGAATTAAAATTGTCTATTTTTGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATATTGACTAAGTATTAAGAGAATTAAAATTGTCTATTTTTGAC  293

seq1  TCATATTGTCAGATAAAGTTGTTTTTATCATGATTGGAAAAATTACTTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTGTCAGATAAAGTTGTTTTTATCATGATTGGAAAAATTACTTAA  343

seq1  TTTTATTATTTCTTGTCTTTTTGCACTTTTTCAGTATAAAGTAATGCTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATTTCTTGTCTTTTTGCACTTTTTCAGTATAAAGTAATGCTTT  393

seq1  CTACCTTTTAAGTAAAAAGCAGTATGATTTTTTTTGCAGGCATTTATTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTTAAGTAAAAAGCAGTATGATTTTTTTTGCAGGCATTTATTAT  443

seq1  AAATGCAACCTGAAATTAACATAAACTAAAAAGAGAAACCTTAGAATGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAACCTGAAATTAACATAAACTAAAAAGAGAAACCTTAGAATGTA  493

seq1  TTTAAGATTATCCAATATAGGGCATAAGTGAGCCTCATCAACAGAAATAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATTATCCAATATAGGGCATAAGTGAGCCTCATCAACAGAAATAC  543

seq1  CTCAAGGAGATCTCTTGCCCAGTTCTGACAAGATATTTCTGTTTTTCATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGAGATCTCTTGCCCAGTTCTGACAAGATATTTCTGTTTTTCATA  593

seq1  AAGGCCTTAATTAAAATGCCATATTTCACAGAGATCTGATCAGAACACTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTAATTAAAATGCCATATTTCACAGAGATCTGATCAGAACACTC  643

seq1  AATAATAGCTACTCTCTGTCCATCTCACTCACTAAAACCCCAGCTTTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGCTACTCTCTGTCCATCTCACTCACTAAAACCCCAGCTTTTTC  693

seq1  TCCTAGCATCCATTGCTATCTAATTTTGCATCAATTCATTCTACGTTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCATCCATTGCTATCTAATTTTGCATCAATTCATTCTACGTTTCT  743

seq1  GGAAGTCTTGTCTGTAATCTTCATCTATACATCTGAGGGAATGGATTAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTTGTCTGTAATCTTCATCTATACATCTGAGGGAATGGATTAGT  793

seq1  GATTATTGGTAGGTATTTATTTAATAAAAGAAAAGGTGCTCTTGAGCTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTGGTAGGTATTTATTTAATAAAAGAAAAGGTGCTCTTGAGCTCA  843

seq1  AAATGGGCTTATAGTTGATATATGGTAAGTGGAAGACATCTTAATTACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCTTATAGTTGATATATGGTAAGTGGAAGACATCTTAATTACAA  893

seq1  AATGCATGTTGCATCTAACCCATTGATTAATATAGTTCAGCACTGCACTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGTTGCATCTAACCCATTGATTAATATAGTTCAGCACTGCACTG  943

seq1  CACAGGGATCAACAGCTGGTTATGCTAAGGAACTTGAAGCTTACTGGAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGATCAACAGCTGGTTATGCTAAGGAACTTGAAGCTTACTGGAGT  993

seq1  GAAAGCCATCATCGGAGCAGGCAACAAAAACATCTAAGTATCCAATATGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCATCATCGGAGCAGGCAACAAAAACATCTAAGTATCCAATATGC  1043

seq1  ATCATGATCCATTTAATCTACTCTCATTTCTCAAAGGTTAAAATGTATCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATCCATTTAATCTACTCTCATTTCTCAAAGGTTAAAATGTATCA  1093

seq1  TTAAACTTCTATTAATAGAACAGAACCATTAAACAAAAATTATTGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTCTATTAATAGAACAGAACCATTAAACAAAAATTATTGAATTC  1143