BAC Information

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BAC

Clone NameB6Ng01-084M19
Chromosome15 (Build37)
Map Location 16,789,761 - 16,923,671
singlet/doubletdoublet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119, Cdh9
Downstream geneLOC100040162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084M19.bB6Ng01-084M19.g
ACCDH898646DH898647
length5071,139
definitionDH898646|Mus musculus domesticus DNA, BAC clone: B6Ng01-084M19, 5' end.DH898647|Mus musculus domesticus DNA, BAC clone: B6Ng01-084M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,789,761 - 16,790,276)(16,922,535 - 16,923,671)
sequence
cagtcacaggaagaatgaagtaagcaggagaaatagtcttcttaagggaa
gaagacaacaattatctaacaccaattttcaagcctgaatacaacacttt
ttaagtgtttttcaagggactcaaactcaaggtctcctgtatattatgca
aaggttctacccctaattacgttcttcttttcttttcttttcttttcttt
tcttttcttttcttttctttcctttcctttcctttcctttcctttccttt
cctttcctttcctttccttttctctcctttcccttcctttcctttccttt
cctttcccttccttccccttcttcccttccccttcttccccttcccatcc
cacttcttcccattcccattcttttcaatcccattccccttctcttttct
cttttctcttttctcttttctcttttctcttttctctttactcttttctc
ttttctctttctcttttctcttttcgctttcttttattttcttctcttct
cttctct
gaattctttgtttaactctgtaccccatttttaatgggtttatttgaatt
tcttgatttcagctccttgagctctttgtatatattgaatattagtcccc
tatcagatttaggattggctgtggttttttataagaacaatagtatttgt
gattcccctaggctcatgtatgtctaatctcaggttttatttctcattcc
attttaataggtttggtgcacttgatagatagcctttgttgacactcgtg
gtcctttggaacatgtaaatatttctgtgaaatatccaggggttattctt
gttggccattatgactgacttggttttactctcatgtcgcattcaagaac
tctctttagtctgtatctatagtgttaaatatgtcattgggtttttctct
ttgtagtgtttatttggagttttgtagtgttcttgttcctatatggaaaa
tatcaccttctttagatttgaaatgttctactttcaccatctcagaaata
tgttctatcccttttgtttatgttattgagcttctgcaccttgcttttac
tttgtccataatccaaaggttagatctttccctgttgtccaagtgcccat
tgtggttctatgttttaaattttttaatgcagaattttactgagtattca
aattcctctaccttgtctttgactcatggtccctgatttgcacttgatct
agtctattggctaagctttccactaaagcttattttggctttaccaagtt
ttcatttgcagaaacattccaatttggccattctcagtatttcctatctt
taattagttcgaatttcatcacttttattaattttcttatttcatgcact
tgggttttgtttcagtttttttttaaaatatataattcatgcttattttt
tgagatgttcaaatgtattatcaatcattcttttggatctattctggaag
ttctgtcagttttcctcattgggagacgattattgcaggataggtatttt
tgggagaagactatttttattttcatgttggtagttctcggcataaggat
ctggtgtggctaagtactttatttcccattgtcttctcttacctctttcg
catatgaaataatcatttttcccgtttattagattgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16789761_16790276
seq2: B6Ng01-084M19.b_47_559

seq1  GAATTCCAGTCACAGGAAGAATGAAGTAAGCAGGAGAAATAGTCTTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCACAGGAAGAATGAAGTAAGCAGGAGAAATAGTCTTCTTA  50

seq1  AGGGAAGAAGACAACAATTATCTAACACCAATTTTCAAGCCTGAATACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGAAGACAACAATTATCTAACACCAATTTTCAAGCCTGAATACAA  100

seq1  CACTTTTTAAGTGTTTTTCAAGGGACTCAAACTCAAGGTCTCCTGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTAAGTGTTTTTCAAGGGACTCAAACTCAAGGTCTCCTGTATAT  150

seq1  TATGCAAAGGTTCTACCCCTAATTACGTTCTTCTTTTCTTTTCTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAGGTTCTACCCCTAATTACGTTCTTCTTTTCTTTTCTTTTCTT  200

seq1  TTCTTTTCTTTTCTTTTCTTTTCTTTCCTTTCCTTTCCTTTCCTTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTCTTTTCTTTTCTTTCCTTTCCTTTCCTTTCCTTTCCTT  250

seq1  TCCTTTCCTTTCCTTTCCTTTCCTTTTCTCTCCTTTCCCTTCCTTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTTTCCTTTCCTTTCCTTTTCTCTCCTTTCCCTTCCTTTCCTT  300

seq1  TCCTTTCCTTTCCCTTCCTTCCCCTTCTTCCCTTCCCCTTCTTCCCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTTTCCCTTCCTTCCCCTTCTTCCCTTCCCCTTCTTCCCCTTC  350

seq1  CCCTTCCCCTTCTTCCCCTTCCCATTCTTCCCAATCCCATTCCCCTTCTC  400
      || | || ||||||||| |||||||||||  |||||||||||||||||||
seq2  CCATCCCACTTCTTCCCATTCCCATTCTTTTCAATCCCATTCCCCTTCTC  400

seq1  TTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTACTCT  450

seq1  TTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTC  500
      ||||||||||||| |||||||||||||||||| | ||||| |||  | ||
seq2  TTTCTCTTTTCTC-TTTCTCTTTTCTCTTTTCGC-TTTCT-TTTATTTTC  497

seq1  TTCTCTTCTCTTCTCT  516
      ||||||||||||||||
seq2  TTCTCTTCTCTTCTCT  513

seq1: chr15_16922535_16923671
seq2: B6Ng01-084M19.g_69_1207 (reverse)

seq1  TTTCAATCTAAATAAAC-GGAAAAATAGATAATTCATATAGACGAAAGA-  48
      ||||||||| ||||||| ||||||||   || |||||||   ||||||| 
seq2  TTTCAATCT-AATAAACGGGAAAAATGATTATTTCATAT--GCGAAAGAG  47

seq1  GTAAGA-AAGACAAATGGAAATAAAGTACTTAAGCCACA-CAGATCACTA  96
      |||||| |||||||  ||||||||||||||| ||||||| ||||||  ||
seq2  GTAAGAGAAGACAATGGGAAATAAAGTACTT-AGCCACACCAGATCCTTA  96

seq1  TGCAGAAGAACTAACAACATGAAAATAAAATAAGTCTTCTCCAAAAATTA  146
      ||| | ||||||| ||||||||||||||||  |||||||||| |||| ||
seq2  TGCCG-AGAACTACCAACATGAAAATAAAAATAGTCTTCTCCCAAAAATA  145

seq1  CTTATCCTGCAATAATCGTCT-CCATTGAGGAAAACCTGACAGAACTTCC  195
      | ||||||||||||||||||| ||| ||||||||| ||||||||||||||
seq2  CCTATCCTGCAATAATCGTCTCCCAATGAGGAAAA-CTGACAGAACTTCC  194

seq1  AGAATAGAATCCAAAAGAATGATTGATAATACATTTGAACATCTC-AAAA  244
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAATAG-ATCCAAAAGAATGATTGATAATACATTTGAACATCTCAAAAA  243

seq1  ATAAGCATG-ATTATATATTTTAAAAAAAAACTGGAACAAAA-CCAAGTG  292
      ||||||||| |||||||||||||||||||||||| ||||||| |||||||
seq2  ATAAGCATGAATTATATATTTTAAAAAAAAACTGAAACAAAACCCAAGTG  293

seq1  CATGAAATAAGAAAATTAATAAAAGTGATGAAATTCGAACTAATTAAAGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATAAGAAAATTAATAAAAGTGATGAAATTCGAACTAATTAAAGA  343

seq1  TAGGAAATACTGAGAATGGCCAAATTGGAATGTTTCTGCAAATGAAAACT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATACTGAGAATGGCCAAATTGGAATGTTTCTGCAAATGAAAACT  393

seq1  TGGT-AAGCCAAAATAAGCTTTAGTGGAAAGCTTAGCCAATAGACTAGAT  441
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGCCAAAATAAGCTTTAGTGGAAAGCTTAGCCAATAGACTAGAT  443

seq1  CAAGTGCAAATCAGGGACCATGAGTCAAAGACAAGGTAGAGGAATTTGAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCAAATCAGGGACCATGAGTCAAAGACAAGGTAGAGGAATTTGAA  493

seq1  TACTCAGTAAAATTCTGCATTAAAAAATTTAAAACATAGAACCACAATGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGTAAAATTCTGCATTAAAAAATTTAAAACATAGAACCACAATGG  543

seq1  GCACTTGGACAACAGGGAAAGATCTAACCTTTGGATTATGGACAAAGTAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGACAACAGGGAAAGATCTAACCTTTGGATTATGGACAAAGTAA  593

seq1  AAGCAAGGTGCAGAAGCTCAATAACATAAACAAAAGGGATAGAACATATT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGTGCAGAAGCTCAATAACATAAACAAAAGGGATAGAACATATT  643

seq1  TCTGAGATGGTGAAAGTAGAACATTTCAAATCTAAAGAAGGTGATATTTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATGGTGAAAGTAGAACATTTCAAATCTAAAGAAGGTGATATTTT  693

seq1  CCATATAGGAACAAGAACACTACAAAACTCCAAATAAACACTACAAAGAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAGGAACAAGAACACTACAAAACTCCAAATAAACACTACAAAGAG  743

seq1  AAAAACCCAATGACATATTTAACACTATAGATACAGACTAAAGAGAGTTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCAATGACATATTTAACACTATAGATACAGACTAAAGAGAGTTC  793

seq1  TTGAATGCGACATGAGAGTAAAACCAAGTCAGTCATAATGGCCAACAAGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGCGACATGAGAGTAAAACCAAGTCAGTCATAATGGCCAACAAGA  843

seq1  ATAACCCCTGGATATTTCACAGAAATATTTACATGTTCCAAAGGACCACG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCCTGGATATTTCACAGAAATATTTACATGTTCCAAAGGACCACG  893

seq1  AGTGTCAACAAAGGCTATCTATCAAGTGCACCAAACCTATTAAAATGGAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAACAAAGGCTATCTATCAAGTGCACCAAACCTATTAAAATGGAA  943

seq1  TGAGAAATAAAACCTGAGATTAGACATACATGAGCCTAGGGGAATCACAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATAAAACCTGAGATTAGACATACATGAGCCTAGGGGAATCACAA  993

seq1  ATACTATTGTTCTTATAAAAAACCACAGCCAATCCTAAATCTGATAGGGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTGTTCTTATAAAAAACCACAGCCAATCCTAAATCTGATAGGGG  1043

seq1  ACTAATATTCAATATATACAAAGAGCTCAAGGAGCTGAAATCAAGAAATT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATTCAATATATACAAAGAGCTCAAGGAGCTGAAATCAAGAAATT  1093

seq1  CAAATAAACCCATTAAAAATGGGGTACAGAGTTAAACAAAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAACCCATTAAAAATGGGGTACAGAGTTAAACAAAGAATTC  1139