BAC Information

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BAC

Clone NameB6Ng01-086I22
Chromosome15 (Build37)15 (Build37)
Map Location 96,622,699 - 96,623,77956,284,866 - 56,285,097
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941
Downstream geneLOC546651, Slc38a4, Amigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086I22.bB6Ng01-086I22.g
ACCDH899919DH899920
length1,067990
definitionDH899919|Mus musculus domesticus DNA, BAC clone: B6Ng01-086I22, 5' end.DH899920|Mus musculus domesticus DNA, BAC clone: B6Ng01-086I22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,622,699 - 96,623,779)(56,284,866 - 56,285,097)
sequence
gaattcacagaatgagccaggtggctcagtgggtaaaagtccttgcctcg
aagcctgctgatccaaggaagggcctcaggatccaacctcagggacccat
gtgaagagaactggctcctttaagtgtcacttgagaactgtggtgtacac
acccacacacacacacacacacacacccacatacacacacacacacgctg
gagcacacacacacccttgaaataaatgaataaaatgtcttttttaaaaa
gaatgcacaaaaatgaatagatacagtgaagaacacaaggaaactgatta
actgattttgaaaaaatttccaggttttttttttaatggtttattgcaat
tctcatggacttatttctagctttaaaataacagagaactgcaagaagac
aagtaggaacatttacaagtctggtttccagctgcctagcccaggctaaa
atgcacgaaaggtttttttttttttttttttttttttttttttttttttt
aaaatttctacccttgatagtcaggacacatttgcttaaatgtcaccctt
ttagctctattacccacccctccccacccccgccagacttatagtcttca
tttttcaattgcaacaaaatacatgtctgttcttttctccatatatggaa
atactagatcttgatcccccacccccatctgccctctctcaggataaaac
aaaaactagagggcaggaaggcattgccccccactcttcatgaccctcac
ctcacctgagaagttatgcactgaccactgattttggagtgccttttcag
atcccctactgtgctaggaattccattttttgttggttgttttgttttcc
aagacaggttactctgtgtagctctggctgtcctggaactcactctgtaa
aacaagctggcctcgaactcagagattcgcctgcctctgcctccgagtgc
tgggaataaagctgcgccaacacgctggcagagagtctgcagtctgaaaa
gtggaggagggcaaatctgtaattctatgcgcatcaggaaagacgaaggt
gggatgactaggaagga
gaattctatacagcctcagtcaaactctcagaagctgttctgcgagtata
gacaaaccaattttaaagtttagggagagatcataaagagccaataccac
attgaaggagacaaagagtcaggaaactaatactgtgttgcttcaaggtt
aattataaaagctacaaatccaatgcaacattgtatccacagaacaggca
agttgatgaaagagatacaatacagtcaactggtctgtattggaggagta
aaggtggtctaaatactggtagaccacaacccaagccaaaactataaagg
tagacacagaacatgacttcagaacacgggctcacagtagatcttagatc
tgaatgtgagacataaagctgtgagactttagaaagagaagaatctacat
ggccctctgtttggatgtgagtttttaatgtaacattggttatatatacc
ccaacactaaaagcacatacgtgaaaaagatcagctggacgtcattaaaa
ttaaatgtttctggtcggcaaaagacactgccaaaggaaatggaaagata
atccacagtgtagatgaaaacgtatgaataagctaaataaattaaataaa
ctacccaaccaactagcaaaaaccatcaaacttcaaaacacacctcatca
aagagacacggttgacaaatatttacatgaaaggtgtcattattgacatc
tagccttagtctctggtgatctgataggatgcatgagattatttcaatct
tctttgtatctgttgaggcttgttttgttatggtcaatttttggagaaaa
taccatagtaccacaagatgctgagaagaagaaggtgtattctttagttt
gttttatggtgaaatgtttacacacacacacacacacacacacacacaca
cacattccatttggttcataaccttttatagtttcactgtgtctctgtta
agtttctgtttcaatgacctgttgacctgtctattggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_96622699_96623779
seq2: B6Ng01-086I22.b_51_1117

seq1  GAATTCACAGAATGAGCCAGGTGGCTCAGTGGGTAAAAGTCCTTGCCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAATGAGCCAGGTGGCTCAGTGGGTAAAAGTCCTTGCCTCG  50

seq1  AAGCCTGCTGATCCAAGGAAGGGCCTCAGGATCCAACCTCAGGGACCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCTGATCCAAGGAAGGGCCTCAGGATCCAACCTCAGGGACCCAT  100

seq1  GTGAAGAGAACTGGCTCCTTTAAGTGTCACTTGAGAACTGTGGTGTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGAACTGGCTCCTTTAAGTGTCACTTGAGAACTGTGGTGTACAC  150

seq1  ACCCACACACACACACACACACACACCCACATACACACACACACACGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACACACACACACACACACCCACATACACACACACACACGCTG  200

seq1  GAGCACACACACACCCTTGAAATAAATGAATAAAATGTCTTTTTTAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACACACACCCTTGAAATAAATGAATAAAATGTCTTTTTTAAAAA  250

seq1  GAATGCACAAAAATGAATAGATACAGTGAAGAACACAAGGAAACTGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACAAAAATGAATAGATACAGTGAAGAACACAAGGAAACTGATTA  300

seq1  ACTGATTTTGAAAAAATTTCCAGGTTTTTTTTTTAATGGTTTATTGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTGAAAAAATTTCCAGGTTTTTTTTTTAATGGTTTATTGCAAT  350

seq1  TCTCATGGACTTATTTCTAGCTTTAAAATAACAGAGAACTGCAAGAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGGACTTATTTCTAGCTTTAAAATAACAGAGAACTGCAAGAAGAC  400

seq1  AAGTAGGAACATTTACAAGTCTGGTTTCCAGCTGCCTAGCCCAGGCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGAACATTTACAAGTCTGGTTTCCAGCTGCCTAGCCCAGGCTAAA  450

seq1  ATGCACGAAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACGAAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  500

seq1  TAAATTTCTACCTTTGATAGTCAGGACACATTTGCTTAAATGTCACCCTT  550
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTACCCTTGATAGTCAGGACACATTTGCTTAAATGTCACCCTT  550

seq1  TTAGCTCTATTACCCACCCCTCCCCACCCCCGCCAGACTTATAGTCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTATTACCCACCCCTCCCCACCCCCGCCAGACTTATAGTCTTCA  600

seq1  TTTTTCAATTGCAACAGAATACATGTCTGTTCTTTTCTCCATATATGGAG  650
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  TTTTTCAATTGCAACAAAATACATGTCTGTTCTTTTCTCCATATATGGAA  650

seq1  ATACTAGATCTTGATCCCCCACCCCCATCTGCCCTCTCTCAGGATAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGATCTTGATCCCCCACCCCCATCTGCCCTCTCTCAGGATAAAAC  700

seq1  AGAGACTAGAGGGCAGGAAGGCATTGCCCCCCACTCTTCATGACCCTCAC  750
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAGAGGGCAGGAAGGCATTGCCCCCCACTCTTCATGACCCTCAC  750

seq1  CTCACCTGAG-AGTTATGCACTGACCACTGATTTTGGAGTGCCTTTTCAG  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGAGAAGTTATGCACTGACCACTGATTTTGGAGTGCCTTTTCAG  800

seq1  ATCCCCTACTGTGCTAGGAATTCCATTTTTTGTTTGTTTGTTTTGTTTTC  849
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  ATCCCCTACTGTGCTAGGAATTCCATTTTTTG-TTGGTTGTTTTGTTTTC  849

seq1  CAAGACAGGGTTACTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACA-GGTTACTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGT  898

seq1  AAACCAGGCTGGCCTCGAACTCAGAGATCCGCCTGCCTCTGCCTCCCGAG  949
      ||| || ||||||||||||||||||||| ||||||||||||||| |||||
seq2  AAAACAAGCTGGCCTCGAACTCAGAGATTCGCCTGCCTCTGCCT-CCGAG  947

seq1  TGCTGGGATTAAAGGCGTGCGCCACCACGCCTGGCAGGAAGAGTCTGCAG  999
      |||||||| |||||   ||||||| |||| |||||||  |||||||||||
seq2  TGCTGGGAATAAAG--CTGCGCCAACACG-CTGGCAG--AGAGTCTGCAG  992

seq1  TCTGAAGAGTGGAGGAGGGCAAAATCTGGTAAATTCTAATGCCGCCATCA  1049
      |||||| ||||||||||||| |||||||   |||||| ||||   |||||
seq2  TCTGAAAAGTGGAGGAGGGC-AAATCTG--TAATTCT-ATGC--GCATCA  1036

seq1  GGCAGAGCCGAGGTTGGGATGACTAGGAAGGA  1081
      || | || ||| | ||||||||||||||||||
seq2  GG-AAAGACGAAGGTGGGATGACTAGGAAGGA  1067

seq1: chr15_56284866_56285097
seq2: B6Ng01-086I22.g_694_969

seq1  AACTTCAAAACACACCATTTGTTAAAAAGTAGCAAGTTCATGTAGTAAAA  50
      ||||||||||||||||  |  | ||| ||   || | |    |   ||| 
seq2  AACTTCAAAACACACC--TCATCAAAGAG--ACACGGT----TGACAAAT  42

seq1  ATTTA----GGAGGTGGCAAAA---------AGGCTT------------T  75
      |||||      ||||| ||  |         || |||            |
seq2  ATTTACATGAAAGGTGTCATTATTGACATCTAGCCTTAGTCTCTGGTGAT  92

seq1  GTAATAAGCAGCA----GCCATTTCCCCCTCCATTTG-----GTTAAAG-  115
       | ||| |  |||       |||||   || | ||||     ||| | | 
seq2  CTGATAGGATGCATGAGATTATTTCAATCTTC-TTTGTATCTGTTGAGGC  141

seq1  -----ATGCCATGGTTACTCT-------CCCTGCTCTAGCTACCTAAAAC  153
            ||  ||||| | | |          | |  ||| ||||  ||  
seq2  TTGTTTTGTTATGGTCAATTTTTGGAGAAAATACCATAG-TACCACAAGA  190

seq1  TGTTCTGGGCAGATAGAAGAGACA-----CAG---GAATCA--CACACAT  193
      ||  ||| | ||| |||||    |      ||   |  | |     | ||
seq2  TG--CTGAGAAGA-AGAAGGTGTATTCTTTAGTTTGTTTTATGGTGAAAT  237

seq1  ACATACACACACACACACACACACACACACACACACACA  232
         ||||||||||||||||||||||||||||||||||||
seq2  GTTTACACACACACACACACACACACACACACACACACA  276