BAC Information

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BAC

Clone NameB6Ng01-087B02
Chromosome15 (Build37)
Map Location 47,586,788 - 47,588,041
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087B02.bB6Ng01-087B02.g
ACCDH900297DH900298
length1,205964
definitionDH900297|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B02, 5' end.DH900298|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatggggaggaatcaatacaactacttaaaacaactttcctcatt
cctacacagttatgaggataatattggtcaactgagcacagcatggaaat
ggacatcaagccttagtgtgtttctagactacagtgtcacttaccttgat
aaacaaagtgaaatcccttagctgttatgggtccaactgaagtgaatcga
attgtgatctgattacctgaactcagtggaagtgactctcctactcaaca
aaacaaacactcagatatcataaataatcttcattcagtaaacctaaaaa
actatatcattttacactctcatttgaaaaggtcaaactaggttctatca
aattatttcaaaatatcctactgctagcaatatattttccttgggttcag
cttcaattgaaatcttttttttttttaaccagaaagcttcaattacattt
taatacatatgtctcagtcttaaatattttatatcatatgaaacagcaca
gattgtgattaagtattgtatttattttattacaatcctagaaaataatt
caatttctttcaagcgtattaattaatattaaattgtggttttattctta
gttaaaaagttttcagtttatggtattgctaacatggatgacatagatct
caactctctccaaaatactaatcaaaagtcagtctttaagcaatagctga
tgaatggcagttctagtaaaggatacctgaatgggatcccgagagggaag
ataacagaggagactgctgagttggcccatcaaacacctcaacaacatcg
tggagtgatgtctggaaaaatacaaactggccaaacaccactgagcaaca
ggaaccaggagaagcaaaccaatcaccaaccattcaaaacaaaacaaaaa
caaacaaacgaaaataaatagaagaggaggagacagagacaaagtattac
atatatagtcatctgcatgtttgtttgtattttgtattctacctatagtg
aggatcagtgcaaacaggattctggcacatgtatttcagccacaaagtat
gaccatgatttagcagtaaaatcgagaagactaatatttagggaaaaaaa
tcaattcacattatttatcgaaggtgagtcatgcattagatatctaaaca
cttcgaattttattcgactagatattgactgtactctcctttataacagt
tctcc

gaattcctgtgaaacaaagtaatttagaaatacccattgtggtggtttaa
atatgcttggcctagggagttgcactcctcagaggtatgaccttgctgga
ggaggtatatcactatagggtaggcttggagactctcccccagcctcctt
tgggaaaagatttaaactctcattctccccagcaccatgcctacctggac
attgccatgcttcctgccttgatgataatgaaatgaacctcagaacctgt
gatcatttataaaagttcttagtcatggtacctcttcatagcaatggaaa
tcctaagacagaagtttataccaggaacaggggcattcctctgatagacc
cagccatgtttttgtttggaggaatgtggatattgggatttggatttgga
aagccagggattgctttaagtgggacttaatgggccatcctataggaata
cggaagcatcagctctgagtgtgattagaactctgaagatcattcttctg
atgttttggtgaagaatgtggctttttgccctcatctacagatcttgcct
gaagctgagataaagagatcttgagtcatggcattgacaaaagaagtgtc
aaatcaatcaagtttatattttatcatgatggttcactcttcaaggaaga
ttctaatcaatagttgcagcttaaaaaaatacaaaatatatggttcaaag
aattaaagggcacaggatccccaatgaaggagctagagaaagtacccaag
gagctaaagagaactgcaaccctataggtggaacaacaatatgaacttac
cagtaccccggagctctggagctcttgtctctagctgcatatgtatcaga
agatggcctagtcagccatcactgggaagagaggcccctaggtcttgcaa
atgttatatgcctcactacagggaatgccagggccagaagtgggagtggg
tggggtaggggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47586788_47588041
seq2: B6Ng01-087B02.b_47_1251

seq1  GAATTCATGGGGAGGAATCAATACAACTACTTAAAACAACTTTCCTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGGAGGAATCAATACAACTACTTAAAACAACTTTCCTCATT  50

seq1  CCTACACAGTTATGAGGATAATATTGGTCAACTGAGCACAGCATGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACAGTTATGAGGATAATATTGGTCAACTGAGCACAGCATGGAAAT  100

seq1  GGACATCAAGCCTTAGTGTGTTTCTAGACTACAGTGTCACTTACCTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCAAGCCTTAGTGTGTTTCTAGACTACAGTGTCACTTACCTTGAT  150

seq1  AAACAAAGTGAAATCCCTTAGCTGTTATGGGTCCAACTGAAGTGAATCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTGAAATCCCTTAGCTGTTATGGGTCCAACTGAAGTGAATCGA  200

seq1  ATTGTGATCTGATTACCTGAACTCAGTGGAAGTGACTCTCCTACTCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATCTGATTACCTGAACTCAGTGGAAGTGACTCTCCTACTCAACA  250

seq1  AAACAAACACTCAGATATCATAAATAATCTTCATTCAGTAAACCTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACACTCAGATATCATAAATAATCTTCATTCAGTAAACCTAAAAA  300

seq1  ACTATATCATTTTACACTCTCATTTGAAAAGGTCAAACTAGGTTCTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATCATTTTACACTCTCATTTGAAAAGGTCAAACTAGGTTCTATCA  350

seq1  AATTATTTCAAAATATCCTACTGCTAGCAATATATTTTCCTTGGGTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCAAAATATCCTACTGCTAGCAATATATTTTCCTTGGGTTCAG  400

seq1  CTTCAATTGAAATCTTTTTTTTTTTTAACCAGAAAGCTTCAATTACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTGAAATCTTTTTTTTTTTTAACCAGAAAGCTTCAATTACATTT  450

seq1  TAATACATATGTCTCAGTCTTAAATATTTTATATCATATGAAACAGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATATGTCTCAGTCTTAAATATTTTATATCATATGAAACAGCACA  500

seq1  GATTGTGATTAAGTATTGTATTTATTTTATTACAATCCTAGAAAATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGATTAAGTATTGTATTTATTTTATTACAATCCTAGAAAATAATT  550

seq1  CAATTTCTTTCAAGCGTATTAATTAATATTAAATTGTGGTTTTATTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTTTCAAGCGTATTAATTAATATTAAATTGTGGTTTTATTCTTA  600

seq1  GTTAAAAAGTTTTCAGTTTATGGTATTGCTAACATGGATGACATAGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAGTTTTCAGTTTATGGTATTGCTAACATGGATGACATAGATCT  650

seq1  CAACTCTCTCCAAAATACTAATCAAAAGTCAGTCTTTAAGCAATAGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCTCCAAAATACTAATCAAAAGTCAGTCTTTAAGCAATAGCTGA  700

seq1  TGAATGGCAGTTCTAGTAAAGGATACCTGAATGGGATCCCGAGAGGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCAGTTCTAGTAAAGGATACCTGAATGGGATCCCGAGAGGGAAG  750

seq1  ATAACAGAGGAGACTGCTGAGTTGGCCCATCAAACACCTCAACAACATCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAGGAGACTGCTGAGTTGGCCCATCAAACACCTCAACAACATCG  800

seq1  TGGAGTGATGTCTGGAAAAATACAAACTGGCCAAACACCACTGAGCAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGATGTCTGGAAAAATACAAACTGGCCAAACACCACTGAGCAACA  850

seq1  GGAACCAGGAGAAGCAAACCAATCACCAACCATTCAAAAACAAAAACAAA  900
      ||||||||||||||||||||||||||||||||||| |||||||||   ||
seq2  GGAACCAGGAGAAGCAAACCAATCACCAACCATTC-AAAACAAAA--CAA  897

seq1  AAACAAACAAACGAAAATAAAATAGAAAGAGGAGGAGACAGAGAACAAAG  950
      |||||||||||||||||| |||||| ||||||||||||||||| ||||||
seq2  AAACAAACAAACGAAAAT-AAATAG-AAGAGGAGGAGACAGAG-ACAAAG  944

seq1  TATTACAATATAATAGTCATCTGCATGTTTTGTTTTGTATTTTGTATTTT  1000
      |||||| |||| ||||||||||||||||||   |||||||||||||  ||
seq2  TATTAC-ATAT-ATAGTCATCTGCATGTTT--GTTTGTATTTTGTA--TT  988

seq1  CTACCTATAAGTGAGGATCAGTGCAAACAGGATTCTGGCACATGTATTTC  1050
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAT-AGTGAGGATCAGTGCAAACAGGATTCTGGCACATGTATTTC  1037

seq1  AGGCCACAAAGGTAATGACCATGATTTAAGGCAGTAAAAATTCGAGAAGA  1100
      | |||||||||   ||||||||||||||  |||||||||  |||||||||
seq2  A-GCCACAAAG--TATGACCATGATTTA--GCAGTAAAA--TCGAGAAGA  1080

seq1  CT-ATATTTAGGGAAAAAAAAATCAATATCACATTTAATTTAATCAGAAA  1149
      || ||||||||||  |||||||||||| |||||||  |||| ||| ||| 
seq2  CTAATATTTAGGG--AAAAAAATCAAT-TCACATT--ATTT-ATC-GAAG  1123

seq1  GTGTGAGGTCATTGTAATTTAGTATTTATCATAACTACTTTCAGATTTTT  1199
      |||    |||| || |  ||||    |||| |||  ||||  |     ||
seq2  GTG---AGTCA-TGCA--TTAG---ATATC-TAAACACTTCGA----ATT  1159

seq1  TTATTCTGACTAGTTTTATTTCACTTTATCACTCTCCTTTTATAACATTT  1249
      |||||| |||||| |    || ||| |   ||||||| |||||||||  |
seq2  TTATTC-GACTAGAT---ATTGACTGT---ACTCTCC-TTTATAACA-GT  1200

seq1  TCTCC  1254
      |||||
seq2  TCTCC  1205


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