BAC Information

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BAC

Clone NameB6Ng01-089I17
Chromosome15 (Build37)
Map Location 73,100,391 - 73,250,385
singlet/doubletdoublet
Overlap genePtk2, LOC666053
Upstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2
Downstream geneLOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089I17.bB6Ng01-089I17.g
ACCDH902096DH902097
length1,0441,025
definitionDH902096|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I17, 5' end.DH902097|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,100,391 - 73,101,443)(73,249,319 - 73,250,385)
sequence
gaattcaggttttgaccagaggaactaataatgtggaaggagaaatgaga
agttgaaggtctctaaatatgataagcaaggacactgttgagatagctgg
gggcaccagaggcattaagacagtctgatccttgggactgtggatcatca
gaagagtcagtaggttcaggactatgctttgcagctccacagaaataaaa
agtcagagaaaaaaagagaaaatggtgaaggagactagaaaagtatgagc
cacagaacaggagaaaacccaagaagatgtgtagttctaaaagccagagt
ttgtcttcaataagttcaaaggatgaagcttaaaagataaaaggaacatg
aaaaaagaaatgctctgtggttctgagtgaatcaagggcacagtatggat
gaacatgggcagacattatatttgtcaaaaccattattcaccttacttta
tcttatgcctcacattctgtcactaagcaaagaagaaaagagcaagaaag
cgaagtggatctgtcagggctttataaaggcttagcaaatgtcaagtcac
cccattcccactgtctttatcgcctaactcctgtccttaccctatgaagt
actggttgataacctgggcagagacacacctaaggacaaaggccacagaa
taatgctgttatgaatcaatctctctctctctctctctctctctcttttt
ttttgtttttcgagacagggttttctctgtgtagtcctggctgacctgga
actcactctgtagacgggctggccttgaactcagaaatccgcctgcctct
gcctcccaagtgctgggattaaaggtgtgcgccaccatgcccggttttct
ctttgacttctatgaatcctttttttctaaaacagctaggtgtgaaaaga
actttaccctctgggttcctatggggttgtgtgatctgtggtttgggttt
tctctggcagtctcagcattctgtgtctctgtaggttttccattgactat
gcatcttcctctgagatatattactgggacctagtctgaagact
gaattctgtatgattcagcgttcagtttaagtggagtttagtgggtgctg
ttgtatctaatctgcaatcttggaactgggaaatagaatttgtgtgtgct
gctggagctggaagacagcattactagtgttgaccagagtttacggacat
gaagatgtttccttatcagccttaaaattaattaaagtagttctatgtgg
aacttgctgatgaatacttccccttgctggaaagaaaatgactggaatca
tcttataataggggagtgatcttaccactgggcccctgtgagtgtcactg
ccttctggggaaacctgggagagtttctcctccttcccagccttggatgg
ggattttgcttcaatgttattcctatgagaactgttggcctgcaggtgct
gtagcacccctagtgtacacagaagacctgcatgttgaagttcagagtaa
cttgtgggggtcacctggctcatattggtagctctggaggggaaatggcc
acccagggcctgcaggactggacaaagcttaactggttttcagaatgtga
gtgatggtacctgggaagtttagataagtagattctgtcttggcactttc
agaaccagagcttctgacttaaacagcacaatatagactagccattgagt
gtatcagagttttggttatttggagtcagttaagaattagttaaatacag
atatataagggtggaacagtgcttgatggtgcttacttgttttagtagct
gacacagcctcgagggtttctgcgagtgattgttcttggattaatgtgta
taaggggaacagtttatggaaagcaagaggcaaggcatgagcttccctgt
gtagtaactcccagaaatttcctcctccttcttcctccttcttcttcttc
ttctcttcttcttcttctcttcttcttcttcttctgagatagggttctct
gtagtctgctgtctgactcactctgtagacgaggctggctcgaactcaga
atctgctgcctctgctcagtgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_73100391_73101443
seq2: B6Ng01-089I17.b_44_1087

seq1  GAATTCAGGTTTTGACCAGAGGAACTAATAATGTGGAAGGAGAAATGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTTTGACCAGAGGAACTAATAATGTGGAAGGAGAAATGAGA  50

seq1  AGTTGAAGGTCTCTAAATATGATAAGCAAGGACACTGTTGAGATAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGGTCTCTAAATATGATAAGCAAGGACACTGTTGAGATAGCTGG  100

seq1  GGGCACCAGAGGCATTAAGACAGTCTGATCCTTGGGACTGTGGATCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCAGAGGCATTAAGACAGTCTGATCCTTGGGACTGTGGATCATCA  150

seq1  GAAGAGTCAGTAGGTTCAGGACTATGCTTTGCAGCTCCACAGAAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCAGTAGGTTCAGGACTATGCTTTGCAGCTCCACAGAAATAAAA  200

seq1  AGTCAGAGAAAAAAAGAGAAAATGGTGAAGGAGACTAGAAAAGTATGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGAAAAAAAGAGAAAATGGTGAAGGAGACTAGAAAAGTATGAGC  250

seq1  CACAGAACAGGAGAAAACCCAAGAAGATGTGTAGTTCTAAAAGCCAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACAGGAGAAAACCCAAGAAGATGTGTAGTTCTAAAAGCCAGAGT  300

seq1  TTGTCTTCAATAAGTTCAAAGGATGAAGCTTAAAAGATAAAAGGAACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCAATAAGTTCAAAGGATGAAGCTTAAAAGATAAAAGGAACATG  350

seq1  AAAAAAGAAATGCTCTGTGGTTCTGAGTGAATCAAGGGCACAGTATGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAATGCTCTGTGGTTCTGAGTGAATCAAGGGCACAGTATGGAT  400

seq1  GAACATGGGCAGACATTATATTTGTCAAAACCATTATTCACCTTACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGGCAGACATTATATTTGTCAAAACCATTATTCACCTTACTTTA  450

seq1  TCTTATGCCTCACATTCTGTCACTAAGCAAAGAAGAAAAGAGCAAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGCCTCACATTCTGTCACTAAGCAAAGAAGAAAAGAGCAAGAAAG  500

seq1  CGAAGTGGATCTGTCAGGGCTTTATAAAGGCTTAGCAAATGTCAAGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTGGATCTGTCAGGGCTTTATAAAGGCTTAGCAAATGTCAAGTCAC  550

seq1  CCCATTCCCACTGTCTTTATCGCCTAACTCCTGTCCTTACCCTATGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCCACTGTCTTTATCGCCTAACTCCTGTCCTTACCCTATGAAGT  600

seq1  ACTGGTTGATAACCTGGGCAGAGACACACCTAAGGACAAAGGCCACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTGATAACCTGGGCAGAGACACACCTAAGGACAAAGGCCACAGAA  650

seq1  TAATGCTGTTATGAATCAATCTCTCTCTCTCTCTCTCTCTCTCTCTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGTTATGAATCAATCTCTCTCTCTCTCTCTCTCTCTCTCTTTTT  700

seq1  TTTTGTTTTTCGAGACAGGG-TTTCTCTGTGTAGTCCTGGCTGACCTGGA  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTTGTTTTTCGAGACAGGGTTTTCTCTGTGTAGTCCTGGCTGACCTGGA  750

seq1  ACTCACTCTGTAGACCGGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTC  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTGTAGA-CGGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTC  799

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCATGCCCGGTTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCATGCCCGGTTTTC  849

seq1  TCTTTGACTTCTATGAATCCCTTTCTTCCTAAAAACAGCTAGGTGTGAAG  899
      |||||||||||||||||||| ||| |||   |||||||||||||||||| 
seq2  TCTTTGACTTCTATGAATCCTTTTTTTC--TAAAACAGCTAGGTGTGAAA  897

seq1  AGAACTGTACTCTCTGGTTTCCTATGGGGTTGTGTGATCTGTG--TTTGG  947
      |||||| ||| |||||| |||||||||||||||||||||||||  || ||
seq2  AGAACTTTACCCTCTGGGTTCCTATGGGGTTGTGTGATCTGTGGTTTGGG  947

seq1  TTTTCTCTGCCAGTTCTCAGCATTTCTGTGTTCTCTGTAGGTTTCCCATT  997
      ||||||||| ||| |||||||| ||||||| ||||||||||||| |||||
seq2  TTTTCTCTGGCAG-TCTCAGCA-TTCTGTG-TCTCTGTAGGTTTTCCATT  994

seq1  GGACTATGCTATCTTCCTTCTGAGAATATATTACTGGGACCTAAGTCCTG  1047
       |||||||| ||||||| |||||| ||||||||||||||||| ||| |||
seq2  -GACTATGC-ATCTTCC-TCTGAG-ATATATTACTGGGACCT-AGT-CTG  1038

seq1  AAGACT  1053
      ||||||
seq2  AAGACT  1044

seq1: chr15_73249319_73250385
seq2: B6Ng01-089I17.g_67_1091 (reverse)

seq1  CCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCC  50
      ||||||||   || ||||||||| ||||| |||||||||||| |||||||
seq2  CCAGCACT---GA-GCAGAGGCA-GCAGA-TTCTGAGTTCGA-GCCAGCC  43

seq1  TCGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACAGAGAAACCCTAT  100
      |||||||||||||||||  || ||||||   |||||||||| ||||||||
seq2  TCGTCTACAGAGTGAGT--CA-GACAGC--AGACTACAGAG-AACCCTAT  87

seq1  CTCAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  150
      |||                 ||||   |||||   |||||   |||||  
seq2  CTC-----------------AGAA--GAAGAA--GAAGAAGAGAAGAA--  114

seq1  AAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAG-GAAAA  199
       |||||   |||||   |||||  ||||| ||||| |||||| | | |||
seq2  GAAGAAGAGAAGAA--GAAGAA--GAAGG-AGGAA-GAAGGAGGAGGAAA  158

seq1  TTTCTGGGAGTTACTACACAGGGAAGCTCATGCCTTGCCTCTTTGCTTTC  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTCTGGGAGTTACTACACAGGGAAGCTCATGCCTTGCCTC-TTGCTTTC  207

seq1  CATAAACTGTTCCCCTTATACACATTAATCCAAGAACAATCACTCGCAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTGTTCCCCTTATACACATTAATCCAAGAACAATCACTCGCAGA  257

seq1  AACCCTCGAGGCTGTGTCAGCTACTAAAACAAGTAAGCACCATCAAGCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCGAGGCTGTGTCAGCTACTAAAACAAGTAAGCACCATCAAGCAC  307

seq1  TGTTCCACCCTTATATATCTGTATTTAACTAATTCTTAACTGACTCCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACCCTTATATATCTGTATTTAACTAATTCTTAACTGACTCCAAA  357

seq1  TAACCAAAACTCTGATACACTCAATGGCTAGTCTATATTGTGCTGTTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAAACTCTGATACACTCAATGGCTAGTCTATATTGTGCTGTTTAA  407

seq1  GTCAGAAGCTCTGGTTCTGAAAGTGCCAAGACAGAATCTACTTATCTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAGCTCTGGTTCTGAAAGTGCCAAGACAGAATCTACTTATCTAAA  457

seq1  CTTCCCAGGTACCATCACTCACATTCTGAAAACCAGTTAAGCTTTGTCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGGTACCATCACTCACATTCTGAAAACCAGTTAAGCTTTGTCCA  507

seq1  GTCCTGCAGGCCCTGGGTGGCCATTTCCCCTCCAGAGCTACCAATATGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCAGGCCCTGGGTGGCCATTTCCCCTCCAGAGCTACCAATATGAG  557

seq1  CCAGGTGACCCCCACAAGTTACTCTGAACTTCAACATGCAGGTCTTCTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGACCCCCACAAGTTACTCTGAACTTCAACATGCAGGTCTTCTGT  607

seq1  GTACACTAGGGGTGCTACAGCACCTGCAGGCCAACAGTTCTCATAGGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTAGGGGTGCTACAGCACCTGCAGGCCAACAGTTCTCATAGGAAT  657

seq1  AACATTGAAGCAAAATCCCCATCCAAGGCTGGGAAGGAGGAGAAACTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGAAGCAAAATCCCCATCCAAGGCTGGGAAGGAGGAGAAACTCTC  707

seq1  CCAGGTTTCCCCAGAAGGCAGTGACACTCACAGGGGCCCAGTGGTAAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTCCCCAGAAGGCAGTGACACTCACAGGGGCCCAGTGGTAAGAT  757

seq1  CACTCCCCTATTATAAGATGATTCCAGTCATTTTCTTTCCAGCAAGGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCTATTATAAGATGATTCCAGTCATTTTCTTTCCAGCAAGGGGA  807

seq1  AGTATTCATCAGCAAGTTCCACATAGAACTACTTTAATTAATTTTAAGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCATCAGCAAGTTCCACATAGAACTACTTTAATTAATTTTAAGGC  857

seq1  TGATAAGGAAACATCTTCATGTCCGTAAACTCTGGTCAACACTAGTAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGGAAACATCTTCATGTCCGTAAACTCTGGTCAACACTAGTAATG  907

seq1  CTGTCTTCCAGCTCCAGCAGCACACACAAATTCTATTTCCCAGTTCCAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCCAGCTCCAGCAGCACACACAAATTCTATTTCCCAGTTCCAAG  957

seq1  ATTGCAGATTAGATACAACAGCACCCACTAAACTCCACTTAAACTGAACG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGATTAGATACAACAGCACCCACTAAACTCCACTTAAACTGAACG  1007

seq1  CTGAATCATACAGAATTC  1067
      ||||||||||||||||||
seq2  CTGAATCATACAGAATTC  1025