BAC Information

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BAC

Clone NameB6Ng01-092G16
Chromosome15 (Build37)
Map Location 23,062,740 - 23,190,084
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545091, Cdh18
Downstream geneLOC624863, LOC666989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092G16.bB6Ng01-092G16.g
ACCDH904184DH904185
length1,1181,116
definitionDH904184|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G16, 5' end.DH904185|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,062,740 - 23,063,876)(23,188,951 - 23,190,084)
sequence
gaattctccataaaaggtttaaagattatacatttcgacatattcagctg
acaacccgtgctttaccacacgtaaaacaaacatcacaccttgaaaagaa
ataaacactttatggtccataaaacacatgaagcacatttagttacttaa
gtcatgtttcaaaaagtcaaatgaaatttaaacaaaagatgctatgaata
gaagttgaatattatatggtataacaccatgaagcaatggtgttagctta
atatttataaaaataagcgtttcttttcagcaaaaccatgtctagtctta
tgaactcataagttgagatctaattttgcatgtacaatacagatcaacta
gaatatatatttgatttagaacagaaaattaaacctatttttttctaatc
tccagtttatatgcaattttaaagcatagttaatgtaaaaaaatacattt
ttataattacaacatggcactgaatacacagaatgtcatcttttaaccat
tgggaattctgaatgagtcaaaatgaccaaatccaaatcaatactgcata
ataaatagaaccatcctgtctccaccaactcagacttcttttctcattgc
aattattgcatttatctgcctgtgaaagatgaaacaactttgaaaaggca
gtaatagataagaaaaaatacaattcattttcgtcctcatcctttgaaat
ggaacaaacctatgattattagagaaaccacaaaatactgataaagaagt
gaagtcctgtaggatgtcgtcaattggtagtcactgtgctgggacttgta
tgcctgtgacttagttttaagtatcaactgcttattttctgtgttttgag
ggtggtacttcatggtaataggaaccagagctttctgaaattgtcatcaa
acttatttttatgccttgagaccaccaatttaatataaattccaaatgcc
ataaaacaatgagaaatcatgcaaatcatttaaataagattttttcaata
atgttaaggtgtttgtttgttgttgtttgttgttgatgattgctttttat
tttatgctgggactgttgatgcagaaattatcttggtccatcatagtcac
taaacgagatagcctttg
gaattcatatgtttctctaagtttttttttaaaagaggacacttaacaat
gtgggtaattatcttaatttctttaattaaatattaggtggctgaaagaa
tttctaattccaaaaagttaatccaaagagaagacatagaattagttcat
ggtaatgtgtatcattattgatatttagtttgcatatatacataaacaca
tactttcatgtattcatgagtaacagggcatatatttaacaaccaaattc
ttaaaaagtattagaaattctaataatagtttgatatctttgatagacaa
ttaaaagcaatatataaaccaagacatgtttggaaagattattctattaa
tataatattcaatatctcttttataaagagtatgtcttaaatgttataga
aacattcaatggtaaattttaattggtatgaataacagaaataaacagtc
atctttatatttaaactgctttagaaaaatagctgtaaatttaatggcat
ttaatgtcactaattacggggaaaaggagtaaacagaaaagagagtcatt
tcgtttcattgacggaatcacttgcacaccgaggtacacaaatgcactaa
cctgttttaggatctacagagaaataaggttgtccttgcaggatactgta
aacaactcgagcactgttcccataggtggggtcatctgcatctgtagctg
tcacctgcagaacagaggtacctgtgcattcaggaaaacaaattttagtg
tctgatggtacttagcacagaactcatttgaacacaactaaagggaggtt
gatgcaatttcaacgcaatttcctatgtcctataaaatgtaattctcctt
tttaagattcctttttgttttatttttacttatgtgcatgtgtgtgtata
tgtagggtacccaaaaaaacagaagatggcattggatacttggggatcct
gtgttacaggcagtttgaggcaacccaacataggccaaactaaactcagg
tcatctagatggcagccatttggaaactgagcatttgtcagcctctaaaa
tactcttattatgttacatgagttttattttcccacaggctatcagaact
aggacctcaaataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_23062740_23063876
seq2: B6Ng01-092G16.b_42_1159

seq1  GAATTCTCCATAAAAGGTTTAAAGATTATACATTTCGACATATTCAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATAAAAGGTTTAAAGATTATACATTTCGACATATTCAGCTG  50

seq1  ACAACCCGTGCTTTACCACACGTAAAACAAACATCACACCTTGAAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCGTGCTTTACCACACGTAAAACAAACATCACACCTTGAAAAGAA  100

seq1  ATAAACACTTTATGGTCCATAAAACACATGAAGCACATTTAGTTACTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACTTTATGGTCCATAAAACACATGAAGCACATTTAGTTACTTAA  150

seq1  GTCATGTTTCAAAAAGTCAAATGAAATTTAAACAAAAGATGCTATGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTTTCAAAAAGTCAAATGAAATTTAAACAAAAGATGCTATGAATA  200

seq1  GAAGTTGAATATTATATGGTATAACACCATGAAGCAATGGTGTTAGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGAATATTATATGGTATAACACCATGAAGCAATGGTGTTAGCTTA  250

seq1  ATATTTATAAAAATAAGCGTTTCTTTTCAGCAAAACCATGTCTAGTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATAAAAATAAGCGTTTCTTTTCAGCAAAACCATGTCTAGTCTTA  300

seq1  TGAACTCATAAGTTGAGATCTAATTTTGCATGTACAATACAGATCAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCATAAGTTGAGATCTAATTTTGCATGTACAATACAGATCAACTA  350

seq1  GAATATATATTTGATTTAGAACAGAAAATTAAACCTATTTTTTTCTAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATATTTGATTTAGAACAGAAAATTAAACCTATTTTTTTCTAATC  400

seq1  TCCAGTTTATATGCAATTTTAAAGCATAGTTAATGTAAAAAAATACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTATATGCAATTTTAAAGCATAGTTAATGTAAAAAAATACATTT  450

seq1  TTATAATTACAACATGGCACTGAATACACAGAATGTCATCTTTTAACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTACAACATGGCACTGAATACACAGAATGTCATCTTTTAACCAT  500

seq1  TGGGAATTCTGAATGAGTCAAAATGACCAAATCCAAATCAATACTGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTCTGAATGAGTCAAAATGACCAAATCCAAATCAATACTGCATA  550

seq1  ATAAATAGAACCATCCTGTCTCCACCAACTCAGACTTCTTTTCTCATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGAACCATCCTGTCTCCACCAACTCAGACTTCTTTTCTCATTGC  600

seq1  AATTATTGCATTTATCTGCCTGTGAAAGATGAAACAACTTTGAAAAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGCATTTATCTGCCTGTGAAAGATGAAACAACTTTGAAAAGGCA  650

seq1  GTAATAGATAAGAAAAAATACAATTCATTTTCGTCCTCATCCTTTGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGATAAGAAAAAATACAATTCATTTTCGTCCTCATCCTTTGAAAT  700

seq1  GGAACAAACCTATGATTATTAGAGAAACCACAAAATACTGATAAAGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAACCTATGATTATTAGAGAAACCACAAAATACTGATAAAGAAGT  750

seq1  GAAGTCCTGTAGGATGTCGTCAATTGGTAGTCACTGTGCTGGGACTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCTGTAGGATGTCGTCAATTGGTAGTCACTGTGCTGGGACTTGTA  800

seq1  TGCCTGTGACTTAGTTTTAAGGTATCAACTGCTTATTTTCTGTGTTTTGA  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCCTGTGACTTAGTTTTAA-GTATCAACTGCTTATTTTCTGTGTTTTGA  849

seq1  GGGTGGTACTTCATGGTAATAGGAACCAGAGCTTTCTGAAATTGTCATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTACTTCATGGTAATAGGAACCAGAGCTTTCTGAAATTGTCATCA  899

seq1  AACTTATTTTTATGCCTTGAGACCACCAATTTAATATAAAATTCCAAATG  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACTTATTTTTATGCCTTGAGACCACCAATTTAATAT-AAATTCCAAATG  948

seq1  CCATAAAACAATGAGAAAATCATGCAAATCATTTAAAATAAGATTTTTTT  1000
      ||||||||||||||| |||||||||||||||||| |||||||| ||||||
seq2  CCATAAAACAATGAG-AAATCATGCAAATCATTT-AAATAAGA-TTTTTT  995

seq1  CAATAATGTTAAGGTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGATTGA  1050
      |||||||||||||||| ||||||||||   |||||||||   |||| |||
seq2  CAATAATGTTAAGGTG-TTTGTTTGTT--GTTGTTTGTT--GTTGA-TGA  1039

seq1  TTGCTTTTTTTATTTTATGCTGGGGGACTGTTGATGCAGAAATTTATCTT  1100
      ||||  |||||||||||||||  ||||||||||||||||||| |||||||
seq2  TTGC--TTTTTATTTTATGCT--GGGACTGTTGATGCAGAAA-TTATCTT  1084

seq1  GTTCCATCCATAGTTCACTAAACAGAGATAGCCTTTG  1137
      | ||||| ||||| ||||||||| |||||||||||||
seq2  GGTCCAT-CATAG-TCACTAAAC-GAGATAGCCTTTG  1118

seq1: chr15_23188951_23190084
seq2: B6Ng01-092G16.g_70_1185 (reverse)

seq1  TTTTAATTTGAGGTCCTATGTTCTTGATAGCCTGTGGAGAAGATAAAACA  50
       ||| ||||||||||||| |||| ||||||||||||| ||| ||||||| 
seq2  -TTTTATTTGAGGTCCTA-GTTC-TGATAGCCTGTGG-GAAAATAAAACT  46

seq1  TACAATTGTAACATAAATTTAAGAAGTAAATTTTAGGGGGCTGGACAAAT  100
       |    ||||||||||   |||| |||  |||||| | |||| |||||||
seq2  CA----TGTAACATAA---TAAG-AGT--ATTTTA-GAGGCT-GACAAAT  84

seq1  GCCTCAGTTTCCAATTGGCTGCCATTCTAGATGACCTGAGTTTAGTTTGG  150
      | |||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  G-CTCAGTTTCCAAATGGCTGCCA-TCTAGATGACCTGAGTTTAGTTTGG  132

seq1  CCTATGTTGGGTTGCTCAAAACTGCCTGTAACACAAGGT-CCCAAGTATC  199
      |||||||||||||||   ||||||||||||||||| | | ||||||||||
seq2  CCTATGTTGGGTTGCCTCAAACTGCCTGTAACACAGGATCCCCAAGTATC  182

seq1  CAATGCCATCTTCTGTTTTTTTTGGGTACCACTACATATACACACACATG  249
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  CAATGCCATCTTCTG-TTTTTTTGGGTACC-CTACATATACACACACATG  230

seq1  CACATAAGTAAAAATTAAAACAAAAAGGAATCTT-AAAAGGAGAATTACA  298
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  CACATAAGTAAAAA-TAAAACAAAAAGGAATCTTAAAAAGGAGAATTACA  279

seq1  TTTTATAGGACATAGGAAATTGCGTTGAAATTGCATCAACCT-CCTTTAG  347
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTATAGGACATAGGAAATTGCGTTGAAATTGCATCAACCTCCCTTTAG  329

seq1  TTGTGTTCAAATGAGTTCTGTGCTAAGTACCATCAGACACTAAAATTTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCAAATGAGTTCTGTGCTAAGTACCATCAGACACTAAAATTTGT  379

seq1  TTTCCTGAATGCACAGGTACCTCTGTTCTGCAGGTGACAGCTACAGATGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAATGCACAGGTACCTCTGTTCTGCAGGTGACAGCTACAGATGC  429

seq1  AGATGACCCCACCTATGGGAACAGTGCTCGAGTTGTTTACAGTATCCTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACCCCACCTATGGGAACAGTGCTCGAGTTGTTTACAGTATCCTGC  479

seq1  AAGGACAACCTTATTTCTCTGTAGATCCTAAAACAGGTTAGTGCATTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAACCTTATTTCTCTGTAGATCCTAAAACAGGTTAGTGCATTTGT  529

seq1  GTACCTCGGTGTGCAAGTGATTCCGTCAATGAAACGAAATGACTCTCTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCGGTGTGCAAGTGATTCCGTCAATGAAACGAAATGACTCTCTTT  579

seq1  TCTGTTTACTCCTTTTCCCCGTAATTAGTGACATTAAATGCCATTAAATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTACTCCTTTTCCCCGTAATTAGTGACATTAAATGCCATTAAATT  629

seq1  TACAGCTATTTTTCTAAAGCAGTTTAAATATAAAGATGACTGTTTATTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTATTTTTCTAAAGCAGTTTAAATATAAAGATGACTGTTTATTTC  679

seq1  TGTTATTCATACCAATTAAAATTTACCATTGAATGTTTCTATAACATTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCATACCAATTAAAATTTACCATTGAATGTTTCTATAACATTTA  729

seq1  AGACATACTCTTTATAAAAGAGATATTGAATATTATATTAATAGAATAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACTCTTTATAAAAGAGATATTGAATATTATATTAATAGAATAAT  779

seq1  CTTTCCAAACATGTCTTGGTTTATATATTGCTTTTAATTGTCTATCAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAACATGTCTTGGTTTATATATTGCTTTTAATTGTCTATCAAAG  829

seq1  ATATCAAACTATTATTAGAATTTCTAATACTTTTTAAGAATTTGGTTGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACTATTATTAGAATTTCTAATACTTTTTAAGAATTTGGTTGTT  879

seq1  AAATATATGCCCTGTTACTCATGAATACATGAAAGTATGTGTTTATGTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATGCCCTGTTACTCATGAATACATGAAAGTATGTGTTTATGTAT  929

seq1  ATATGCAAACTAAATATCAATAATGATACACATTACCATGAACTAATTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAAACTAAATATCAATAATGATACACATTACCATGAACTAATTCT  979

seq1  ATGTCTTCTCTTTGGATTAACTTTTTGGAATTAGAAATTCTTTCAGCCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCTCTTTGGATTAACTTTTTGGAATTAGAAATTCTTTCAGCCAC  1029

seq1  CTAATATTTAATTAAAGAAATTAAGATAATTACCCACATTGTTAAGTGTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTTAATTAAAGAAATTAAGATAATTACCCACATTGTTAAGTGTC  1079

seq1  CTCTTTTAAAAAAAAACTTAGAGAAACATATGAATTC  1134
      |||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAAAAAAAAACTTAGAGAAACATATGAATTC  1116