BAC Information

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BAC

Clone NameB6Ng01-092I09
Chromosome15 (Build37)3 (Build37)
Map Location 48,999,639 - 48,999,701151,458,406 - 151,459,227
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneLOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092I09.bB6Ng01-092I09.g
ACCDH904265DH904266
length717820
definitionDH904265|Mus musculus domesticus DNA, BAC clone: B6Ng01-092I09, 5' end.DH904266|Mus musculus domesticus DNA, BAC clone: B6Ng01-092I09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,999,639 - 48,999,701)(151,458,406 - 151,459,227)
sequence
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgtggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccgaaggatcctgcaatacctctcctgggc
atatatccagatgtcccaaccggtaagaaggacacatgctccactatgtt
catagcagccttgtttataatagccagaagctggaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggaa
tactactcagctatttaaaaaaatgaatttatgaaattgctaggcaaatg
gatggacctggagggtatcatcctgagtgaggtaacccaatcacaaagga
actcgcacaatatgtactcactgataagtggatattagcccagaaactta
ggatacccaagatataagatacaacttgccaaatgcatgaaattcaagaa
gaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaaca
aaacacccgtggaagga
gaattccctatcttcttcatcttgcaaggcaaaaattacaggggagccac
catggctgccagggcctttaaatgagatctgaggaatcctaatcctacta
acaaaagtgattacaatacatgacatctggagggtcacaattcagtttct
agcaacagtacagacagtgacattaatatgaagctacagtgagtgacaca
cagggactgaatctcaaatgctgacatgtatcacgtgggcatgggtgttt
tataaaatcagattgctgtgaccagctaccctgactgatttggtaagtct
ggggttgtaggaggggagtatatttgcaatgggatttcgtatgagggcat
caggcaattctagtgggaagagcacacttggagaggtgctgacctaaacc
cacgtgagcatgaggttaaccagccatgtgttgtggcatgaaatgcacaa
gggacaaagaagctttgtaaaaatgcaaaatttcatcaccactttcatac
tggccatccatacctagcctaagttttccccaaccctaagcaaattgaat
aagaaaaaaagtgaagaaagaacacagacaagaaaatgtttaaaaacaac
cccaaaggcagcgagatgaagggtagctggtctctggtctctaactagct
tcagaaacatttgttcagaaaacagacacaattttctccacaagtctctt
aaaatattgtttggagtttgattcttcagctcagctttctttgtgtctct
ctccactcctttcttctgaaagaatccaaggccagttggattgattttat
gttttcctctctactattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_48999639_48999701
seq2: B6Ng01-092I09.b_716_761 (reverse)

seq1  TCCTTCTATGGGTGTTTTGTTCCCATTTCTAAGAATGTACCCTTTCTAAG  50
      |||||| | ||||||||||||||||                 ||||||||
seq2  TCCTTCCACGGGTGTTTTGTTCCCA-----------------TTTCTAAG  33

seq1  AAAGGGTAAAGTG  63
      |||||||||||||
seq2  AAAGGGTAAAGTG  46

seq1: chr3_151458406_151459227
seq2: B6Ng01-092I09.g_68_887 (reverse)

seq1  GGAATAGTAGAGAGGAAAACATAAAATCAATCCAACTGGCCTTGGATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTAGAGAGGAAAACATAAAATCAATCCAACTGGCCTTGGATTCT  50

seq1  TTCAAGAAGAAAGGAGTGGAGAGAGACACAAAAAGAAAAGCTGAGCTGAA  100
      ||| ||||||||||||||||||||||||||||    ||||||||||||||
seq2  TTC-AGAAGAAAGGAGTGGAGAGAGACACAAA---GAAAGCTGAGCTGAA  96

seq1  GAATCAAACTCCAAACAATATTCTAAGAGACTTGTGGAG-AAATTGTGTC  149
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  GAATCAAACTCCAAACAATATTTTAAGAGACTTGTGGAGAAAATTGTGTC  146

seq1  TGTTTTCTGAAC-AATGTTTCTGAAGCTAGTTAGAGACCAGAGACCAGCT  198
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGAACAAATGTTTCTGAAGCTAGTTAGAGACCAGAGACCAGCT  196

seq1  ACCCTTCATCTCGCTGCCTTTGGGGTTGTTTTTAAACATTTTCTTGTCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCATCTCGCTGCCTTTGGGGTTGTTTTTAAACATTTTCTTGTCTG  246

seq1  TGTTCTTTCTTCACTTTTTTTCTTATTCAATTTGCTTAGGGTTGGGGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTCTTCACTTTTTTTCTTATTCAATTTGCTTAGGGTTGGGGAAA  296

seq1  ACTTAGGCTAGGTATGGATGGCCAGTATGAAAGTGGTGATGAAATTTTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGCTAGGTATGGATGGCCAGTATGAAAGTGGTGATGAAATTTTGC  346

seq1  ATTTTTACAAAGCTTCTTTGTCCCTTGTGCATTTCATGCCACAACACATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACAAAGCTTCTTTGTCCCTTGTGCATTTCATGCCACAACACATG  396

seq1  GCTGGTTAACCTCATGCTCACGTGGGTTTAGGTCAGCACCTCTCCAAGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTAACCTCATGCTCACGTGGGTTTAGGTCAGCACCTCTCCAAGTG  446

seq1  TGCTCTTCCCACTAGAATTGCCTGATGCCCTCATACGAAATCCCATTGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCCACTAGAATTGCCTGATGCCCTCATACGAAATCCCATTGCA  496

seq1  AATATACTCCCCTCCTACAACCCCAGACTTACCAAATCAGTCAGGGTAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTCCCCTCCTACAACCCCAGACTTACCAAATCAGTCAGGGTAGC  546

seq1  TGGTCACAGCAATCTGATTTTATAAAACACCCATGCCCACGTGATACATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAGCAATCTGATTTTATAAAACACCCATGCCCACGTGATACATG  596

seq1  TCAGCATTTGAGATTCAGTCCCTGTGTGTCACTCACTGTAGCTTCATATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTTGAGATTCAGTCCCTGTGTGTCACTCACTGTAGCTTCATATT  646

seq1  AATGTCACTGTCTGTACTGTTGCTAGAAACTGAATTGTGACCCTCCAGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCACTGTCTGTACTGTTGCTAGAAACTGAATTGTGACCCTCCAGAT  696

seq1  GTCATGTATTGTAATCACTTTTGTTAGTAGGATTAGGATTCCTCAGATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTATTGTAATCACTTTTGTTAGTAGGATTAGGATTCCTCAGATCT  746

seq1  CATTTAAAGGCCCTGGCAGCCATGGTGGCTCCCCTGTAATTTTTGCCTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAGGCCCTGGCAGCCATGGTGGCTCCCCTGTAATTTTTGCCTTG  796

seq1  CAAGATGAAGAAGATAGGGAATTC  822
      ||||||||||||||||||||||||
seq2  CAAGATGAAGAAGATAGGGAATTC  820