BAC Information

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BAC

Clone NameB6Ng01-093H22
ChromosomeX (Build37)15 (Build37)
Map Location 62,165,831 - 62,166,35189,175,049 - 89,175,339
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4
Downstream geneLOC100040011, Ctag2, LOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093H22.bB6Ng01-093H22.g
ACCDH904968DH904969
length1,047655
definitionDH904968|Mus musculus domesticus DNA, BAC clone: B6Ng01-093H22, 5' end.DH904969|Mus musculus domesticus DNA, BAC clone: B6Ng01-093H22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,165,831 - 62,166,351)(89,175,049 - 89,175,339)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
tttctggagtccaccttcttgagttctttatatatattggatattagtcc
cctatctgatttgggataggtaaagatcctttcccaatctgttggtggtc
tttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttt
atgaggtcccatttatcgattcttgatcttacagcacaagccattgctgt
tctattcaggaatttttcccctgtacccatatctttgaggcttttcccta
ctttctcctctataagtttcagtgtctctggttttatgtggagttcctta
atccacttagatttgaccttagtacaaggagatagaaatggatcaattcg
cattcttctacatgataaccgccagttgtgccagcaccatttgttgaaaa
tgctgtcttttttccactggatggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatctctgggtcttcaattctgttccattg
gtctacttgtctgtcactataccagtaccatgcagtttttatcacaattg
ctctgtagtacagctttaggtcaggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctaggttttttgttattccagat
gaatctgccaattgccctttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttactatatttgatcctgccaatccatgagcatgggagatctttccatc
ttctgagatcttcttaatttctttcttcagagactttgaaggtcttatca
tacagatctttcacttccttagttagagtcacaccaggtattttatataa
ttgtgactatgagaagggtgtggtttcctaatttctttctcagcctgtta
tctttgtgaaagaaaggccatgtactgttggagttaattttaaatcc
gaattcaattcagccttatctgagacatcctattacatccatcagaggag
gaaactgaaggttaagaagggaattgcctatctttgttgaagtttgctac
atgagatcttggttgagacccaaggggctctctatatagttgtttcagga
taggcatttacatgtgtgtgagatatgggctatggtggcatgttgttatt
gataccagtaatgtggtgacttaagactggggctttaaggatggaccatc
tagtgattgccagatccagggatccatcccataatcagcttccaaacgct
gacaccattgcatacactagcaagattttgctgaaaagacccagatagag
ctctctcttgtgagactatgctggggcctagcaaacacagaagtggatga
tcacagtcagctattggatgggtcacacggcccccaatggaggagctaga
gaaagtacccaaggagctaaagggaactgcaaccctataggtggaacaac
aatatgaactaacagtaccccggagctcttgtctctagctgcatatgtat
caaaaagatggcctagtcggccatcactggaaagagaggccctttggact
tgcaaactttatatgccccagtacaggggaacaccagggccaaaaagagg
gagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_62165831_62166351
seq2: B6Ng01-093H22.b_573_1089 (reverse)

seq1  GGATATAAAATTAACTCCAACAAGTAAATGGCCTTTCTCTACAGAAAGAA  50
      |||| |||||||||||||||| |||| ||||||||||| | || ||||| 
seq2  GGATTTAAAATTAACTCCAAC-AGTACATGGCCTTTCT-TTCACAAAGA-  47

seq1  TAAACAGGGTGAGAGAGAAATTAGGGAAACAACACCCTTCTCAATAGTCA  100
        |||||| ||||| |||||||| |||||| ||||||||||| |||||||
seq2  -TAACAGGCTGAGAAAGAAATTA-GGAAACCACACCCTTCTC-ATAGTCA  94

seq1  CAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGAT  150
      | ||| |||||||||| || || |||||||||||||||||||||||||||
seq2  C-AATTATATAAAATACCT-GGTGTGACTCTAACTAAGGAAGTGAAAGAT  142

seq1  CTGTATGGTAAGAACTTC-AAGTCTCTGAAGAAAGAAATTAAAGAAGATC  199
      ||||||| ||||| |||| ||||||||||||||||||||| |||||||||
seq2  CTGTATGATAAGACCTTCAAAGTCTCTGAAGAAAGAAATT-AAGAAGATC  191

seq1  TCAGAAGATGGAAAGGTCTCCCATGCTCATGGATTGACAGGATC-AATAT  248
      ||||||||||||||| |||||||||||||||||||| ||||||| |||||
seq2  TCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAAATAT  241

seq1  AGTAAAAA----TATCTTGCCCAAAGCAATCTACAGATTCAATGCAATCC  294
      ||||||||    ||||||||| ||||||||||||||||||||||||||||
seq2  AGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCC  291

seq1  CCATCAAAATTCCAACTCAATTCTTCAGCAAATTAGAAAGGGTAATTTGC  344
      ||||||||||||||||||||||||||| | |||||||||||| |||| ||
seq2  CCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATTGGC  341

seq1  AAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAATTCATCTAA  394
      | ||||||||||||||||||||||||||||||||| ||||| || ||| |
seq2  AGATTCATCTGGAATAACAAAAAACCTAGGATAGC-AAAAACTCTTCTCA  390

seq1  AGGATAAAAGAATCTCTGGTGGAATCACCATGCCTGACCTATAGCTGTAC  444
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  AGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTAC  440

seq1  TACAGAGCAATTGTAATAAAAACTGCATGGTACTGGTATAGCTACAGACA  494
      |||||||||||||| ||||||||||||||||||||||||||  |||||||
seq2  TACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACA  490

seq1  AGTAGACCAATGGAATAGAATTGAAGA  521
      ||||||||||||||| |||||||||||
seq2  AGTAGACCAATGGAACAGAATTGAAGA  517

seq1: chr15_89175049_89175339
seq2: B6Ng01-093H22.g_442_724 (reverse)

seq1  CACTCCCCCCCCCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCA  50
              | | ||| |||||||||||||| |||||||||||||||||||
seq2  --------CACTCCCTCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCA  42

seq1  TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGGCGACTA  100
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  TATAAAGTTTGCAAGTCCAAAGGGCCTCTCTTTCCAGTGATGGCCGACTA  92

seq1  GGCCATC-TTTTGGTACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACT  149
      ||||||| ||||| ||||||||||||||||| ||||||||||||||||||
seq2  GGCCATCTTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGTACT  142

seq1  GGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCTCTTTAGCT  199
       ||||||||||||||||||||||||||||||||||||| || ||||||||
seq2  -GTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCT  191

seq1  CCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCA  249
      |||||| ||||||||||||||||||||||||||||| ||||| |||||||
seq2  CCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCGTGTGACCCATCCA  241

seq1  ATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCC  291
      |||||||||||||| |||||||||||||||||||||||||||
seq2  ATAGCTGACTGTGATCATCCACTTCTGTGTTTGCTAGGCCCC  283