BAC Information

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BAC

Clone NameB6Ng01-094C24
Chromosome3 (Build37)15 (Build37)
Map Location 156,277,133 - 156,277,65332,715,211 - 32,715,656
singlet/doubletsingletsinglet
Overlap geneNegr1
Upstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik
Downstream geneLOC100041152, LOC668853, LOC546818, Zranb2, Ptger3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094C24.bB6Ng01-094C24.g
ACCDH905473DH905474
length521906
definitionDH905473|Mus musculus domesticus DNA, BAC clone: B6Ng01-094C24, 5' end.DH905474|Mus musculus domesticus DNA, BAC clone: B6Ng01-094C24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(156,277,133 - 156,277,653)(32,715,211 - 32,715,656)
sequence
gaattcagaaaatattgaactacattgtatttctatggaatcctgagttc
ttatggacactcagttctaccgtcattttaatcttacagcagttctctga
tcttcatcaaaaaacatttttaattaaagcacctgtcatgcctctgtgat
cctgccactggtctcctctgtaatgaattaagctggagacacatcttcct
gagatgtggctgatgagaccgaggacagcgatggcaagaactggtctgaa
gtgcagtggagcctatcagcaccttggtgccgaggtttcctcagggactc
ctgccatacagcactgccacgatgtcaggagatactgatcctctgggtct
gctacaagtttattctctgatacctttaatttacttattgaatgcttcaa
catgtaaatgatattttaacaaccctatcataaatgtaattggtaaatga
ataacatttttaagagagagagagagagagagagagagagagagagagag
aggggtataaggagatggtgt
gaattcagaacttttcagctggggaacgagagtaccagtgagtatgtttg
gccttgaattttttctggtgttaggagcccttttgttctttttcacatgc
tatcaagtgattaagatagggctgaaaattctagaggaaattcaggacaa
tctatcagaagtaaagcggggagagagagtaggaacaaagaggaagtatg
gtacacaaaataagtatacaggcctttccaagggtcttgaacccgaggaa
aagttaaggttaggtaggaatacctggagagagattagaagaaaaagagg
aaaaagggagaagaaaaaagatcgattagcggaggtctctaggagatact
cgtcactagatgagctcaggaagccagctcttagtagctctgaagcaagt
gaagaatcctcctctgaggaaacagactgggaggaagaagcagcccatta
ccagccagctaattggtcaagaaaaaagccaaaagcggctggcgaaagtc
agcgtactgttcaacctcccggcagtcggtttcaaggtccgccctatgcg
gagcccccgccctgcgtagtgcgtcagcaatgcgcagaggggcaatgcgc
agagaggtgcgcagagaggcagtgcgcagagaggtgcgcagagagggcag
tgcgcagagaggcagtgcgcagactcattcattccccgagaggaacaaaa
gaaaatacaacaggcatttccagtctttgaaggagccgagggtgggcgtg
tccacgctccggtagaatacgtacaaattaaggaaattgccgagtcggtt
cgtaaatacggaaccaatgctaatttaccttggcgcagttagacaggctc
gctggcatggcactacgcctgctgattggcagacggtggtaaaagccgct
cctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_156277133_156277653
seq2: B6Ng01-094C24.b_38_558

seq1  GAATTCAGAAAATATTGAACTACATTGTATTTCTATGGAATCCTGAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAATATTGAACTACATTGTATTTCTATGGAATCCTGAGTTC  50

seq1  TTATGGACACTCAGTTCTACCGTCATTTTAATCTTACAGCAGTTCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGACACTCAGTTCTACCGTCATTTTAATCTTACAGCAGTTCTCTGA  100

seq1  TCTTCATCAAAAAACATTTTTAATTAAAGCACCTGTCATGCCTCTGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCAAAAAACATTTTTAATTAAAGCACCTGTCATGCCTCTGTGAT  150

seq1  CCTGCCACTGGTCTCCTCTGTAATGAATTAAGCTGGAGACACATCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCACTGGTCTCCTCTGTAATGAATTAAGCTGGAGACACATCTTCCT  200

seq1  GAGATGTGGCTGATGAGACCGAGGACAGCGATGGCAAGAACTGGTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGGCTGATGAGACCGAGGACAGCGATGGCAAGAACTGGTCTGAA  250

seq1  GTGCAGTGGAGCCTATCAGCACCTTGGTGCCGAGGTTTCCTCAGGGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGGAGCCTATCAGCACCTTGGTGCCGAGGTTTCCTCAGGGACTC  300

seq1  CTGCCATACAGCACTGCCACGATGTCAGGAGATACTGATCCTCTGGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATACAGCACTGCCACGATGTCAGGAGATACTGATCCTCTGGGTCT  350

seq1  GCTACAAGTTTATTCTCTGATACCTTTAATTTACTTATTGAATGCTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAGTTTATTCTCTGATACCTTTAATTTACTTATTGAATGCTTCAA  400

seq1  CATGTAAATGATATTTTAACAACCCTATCATAAATGTAATTGGTAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAATGATATTTTAACAACCCTATCATAAATGTAATTGGTAAATGA  450

seq1  ATAACATTTTTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTTTTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  500

seq1  AGGGGTATAAGGAGATGGTGT  521
      |||||||||||||||||||||
seq2  AGGGGTATAAGGAGATGGTGT  521

seq1: chr15_32715211_32715656
seq2: B6Ng01-094C24.g_67_426 (reverse)

seq1  TCTAGTGATGAGTATAGGCTCCTTCTCCTAGAGACCTCCGCTAATTGATC  50
      |||||||| |||||         |||||||||||||||||||||| ||||
seq2  TCTAGTGACGAGTA---------TCTCCTAGAGACCTCCGCTAATCGATC  41

seq1  TTTTTTCTTTTCC------------TTCCTTCTAATCTCTCCCCAGGTAT  88
      ||||||||| |||            || ||||||||||||| ||||||||
seq2  TTTTTTCTTCTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGTAT  91

seq1  TCTTACCTGACCTAAACTTTTCCTCAGGTTCAAGACCCGTGGAAAGGCCT  138
      || ||||| |||| ||||||||||| |||||||||||| |||||||||||
seq2  TCCTACCTAACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCT  141

seq1  ATATACTTATTTTGTGTACAATATTTCCTCTTTGCTCCTACTCTCTCTCC  188
       |||||||||||||||||| ||| |||||||||| |||||||||||||||
seq2  GTATACTTATTTTGTGTACCATACTTCCTCTTTGTTCCTACTCTCTCTCC  191

seq1  CCGCTTTACTTCTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCC  238
      |||||||||||||||||||||| |||||||||| || |||||||||||||
seq2  CCGCTTTACTTCTGATAGATTGTCCTGAATTTCCTCTAGAATTTTCAGCC  241

seq1  CTGCCTTAACCGCTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAAC  288
      ||  ||||| | ||||||| |||||||||| |||||||||||||||||||
seq2  CTATCTTAATCACTTGATAGCATGTGAAAAAGAACAAAAGGGCTCCTAAC  291

seq1  ACTAGAAAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCCACTT  338
      || ||||||| |||||||||||||                          
seq2  ACCAGAAAAAATTCAAGGCCAAAC--------------------------  315

seq1  TACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACT  388
                                                        
seq2  --------------------------------------------------  315

seq1  TACCTTGTAAAGCTATACTTACGGGTACCCT-GTTCCCCAGCTGAAGAGT  437
                    ||||| || ||||| || |||||||||||||| |||
seq2  --------------ATACTCACTGGTACTCTCGTTCCCCAGCTGAAAAGT  351

seq1  TCTGAATTC  446
      |||||||||
seq2  TCTGAATTC  360