BAC Information

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BAC

Clone NameB6Ng01-094J20
Chromosome15 (Build37)
Map Location 39,745,309 - 39,904,480
singlet/doubletdoublet
Overlap geneLrp12, LOC100039130, LOC670013
Upstream geneBaalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2, Tm7sf4, Dpys
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094J20.bB6Ng01-094J20.g
ACCDH905786DH905787
length1,1961,101
definitionDH905786|Mus musculus domesticus DNA, BAC clone: B6Ng01-094J20, 5' end.DH905787|Mus musculus domesticus DNA, BAC clone: B6Ng01-094J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,745,309 - 39,746,571)(39,903,361 - 39,904,480)
sequence
gaattcagtgtaatattctggggaaaggctttcaagtatattaaaaaaaa
aaatgttgggattgaagagatggctcagtggttaagagtaaaggctgctc
ttcctgagaatccaggttcaacccctagtaccgacatggcagctcacagc
tgtctgtaattccagttcctggacatccaacctttccacacagagacaca
tacaggcaaaataccaataattgtatttttaaaatgcctaccccctccaa
aaagttaagattagattttttatttcatgtacttactagtagtctacaac
tatttaatctctagaatcttctaatttaagtcatcaatgacagatcttta
tgaactggccagaatatatctgccacttaaaataacagcaatgcttattt
atagtattacttttatggaaaagatactttaggtattctactatactatc
ttagtaagagtttgtaagattttgtttgaaatacctcaaaaagaaggatc
tggggctggagagagagctcagcagttagtgtcaggtgccattcttgcag
gggacttaagttcaagtcccagcagccatgctggtggctcacagctgcct
gtaagtctagctctaggaggatcagatcctctggctaccacaggcatgta
caggcacccacattaactagcacacatgagcatgtacacacaggcacaca
cacacacacacacacacacacacacacacacaaaactaaaaacaaaggag
atctttctgaggacagtagattctgtgaagtgaaaaggctgagcaccaca
agcccccagtttccatagaatgaatcacaccccagagagaacacaaaaag
gctttgtgacctctcctgctaagcatctcggtgagtgttcatgcagatag
aaataattgtcattctaaaattagcttccaccactggtataagaactcgt
aataaataagaaaagatttaagatgatccagtcatgactcctatgattac
aaacagtaagtattagggggagtcagaattcaagaagtctaagagactgc
atattcagggatccatccataatagctcacgatgaacccattctaacact
agcaagcgtggtccaagaactatataactgtccttgtgagaactagctaa
ctaacaaacatagaatgggagttccagtacaattgagtatccaagg
gaattcttgattcttcactggtgagaagtttctatcagactttcttccca
cagcccatgtaatttttcctgtcttcccatcctatctcaagctgatggct
ggatttcccaattgatgagctataacacataaaaataaaagaaccacttc
ctctggtgtgggttcaggtttgttgctgttctttttcatgggagttcaaa
tgcatttcagtggcttatcaacatatcgtttgagtcctggaattttaagt
gattccaatatctacaaaatacaaaacaaacctctttcctaaagaatctt
ctcttctatcttcctacaactctgtgaaagtggatggcttgggtatcatt
attcttactctagagactgactgatccagatctacacaaaacgtggtgag
tttctgtttctaagctgcaaaccctatctatggtccttctgctatgcaga
tgtggtttatagagaagcatcaggactcagaaatcagtgtgtttgcctgt
gattttgagatttgaacacatattaagatctgtgatgaaagttaccacaa
cctctgtgtttatgagcctgatgatgctggttggctttgtcaacaatgct
gttcaaactaagttcgtgcatcttatccctccttcctggttctgtttgtg
tttgaaccctaggtgggttcacttgatccctcttcctccttttgtggtgg
taaaatatacagtaggattgtctccttcagctgagaagggaataagggcg
agacactgaaattccaataaaatagaacaagagtaaaatgaggcagaaac
cctttttcctatttacctacacttgaacaaagactgcttttgtgattaaa
aaaattatttattaatttaaaacaaaacaaaaaacacaacaaaaaccacc
tctaaatactctaatagcttccttatcctggtaatagtagtgggagatca
tttgagtgaaggaccactttgagatttcagagctgatgtgtgatgtgggg
agtcacatacaaggaacaattggctgttatgggaatgagtttgatgggca
ctcttatctgcaaatatgtctaagcttataggcaggtactgaaacaggac
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39745309_39746571
seq2: B6Ng01-094J20.b_49_1244

seq1  GAATTCAGTGTAATATTCTGGGGAAAGGCTTTCAAGTATATTAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTAATATTCTGGGGAAAGGCTTTCAAGTATATTAAAAAAAA  50

seq1  AAATGTTGGGATTGAAGAGATGGCTCAGTGGTTAAGAGTAAAGGCTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGGGATTGAAGAGATGGCTCAGTGGTTAAGAGTAAAGGCTGCTC  100

seq1  TTCCTGAGAATCCAGGTTCAACCCCTAGTACCGACATGGCAGCTCACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGAATCCAGGTTCAACCCCTAGTACCGACATGGCAGCTCACAGC  150

seq1  TGTCTGTAATTCCAGTTCCTGGACATCCAACCTTTCCACACAGAGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTAATTCCAGTTCCTGGACATCCAACCTTTCCACACAGAGACACA  200

seq1  TACAGGCAAAATACCAATAATTGTATTTTTAAAATGCCTACCCCCTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCAAAATACCAATAATTGTATTTTTAAAATGCCTACCCCCTCCAA  250

seq1  AAAGTTAAGATTAGATTTTTTATTTCATGTACTTACTAGTAGTCTACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAAGATTAGATTTTTTATTTCATGTACTTACTAGTAGTCTACAAC  300

seq1  TATTTAATCTCTAGAATCTTCTAATTTAAGTCATCAATGACAGATCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATCTCTAGAATCTTCTAATTTAAGTCATCAATGACAGATCTTTA  350

seq1  TGAACTGGCCAGAATATATCTGCCACTTAAAATAACAGCAATGCTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGGCCAGAATATATCTGCCACTTAAAATAACAGCAATGCTTATTT  400

seq1  ATAGTATTACTTTTATGGAAAAGATACTTTAGGTATTCTACTATACTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTACTTTTATGGAAAAGATACTTTAGGTATTCTACTATACTATC  450

seq1  TTAGTAAGAGTTTGTAAGATTTTGTTTGAAATACCTCAAAAAGAAGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAGAGTTTGTAAGATTTTGTTTGAAATACCTCAAAAAGAAGGATC  500

seq1  TGGGGCTGGAGAGAGAGCTCAGCAGTTAGTGTCAGGTGCCATTCTTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGGAGAGAGAGCTCAGCAGTTAGTGTCAGGTGCCATTCTTGCAG  550

seq1  GGGACTTAAGTTCAAGTCCCAGCAGCCATGCTGGTGGCTCACAGCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTAAGTTCAAGTCCCAGCAGCCATGCTGGTGGCTCACAGCTGCCT  600

seq1  GTAAGTCTAGCTCTAGGAGGATCAGATCCTCTGGCTACCACAGGCATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCTAGCTCTAGGAGGATCAGATCCTCTGGCTACCACAGGCATGTA  650

seq1  CAGGCACCCACATTAACTAGCACACATGAGCATGTACACACAGGCACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACCCACATTAACTAGCACACATGAGCATGTACACACAGGCACACA  700

seq1  CACACACACACACACACACACACACACACACAAAACTAAAAACAAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACAAAACTAAAAACAAAGGAG  750

seq1  ATCTTTCTGAGGACAGTAGATTCTGTGAAGTGAAAAGGCTGAGCACCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTGAGGACAGTAGATTCTGTGAAGTGAAAAGGCTGAGCACCACA  800

seq1  AGCCCCCAGTTTCCATAGAATGAATCACACCCCAGAGAGAACACAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCAGTTTCCATAGAATGAATCACACCCCAGAGAGAACACAAAAAG  850

seq1  GCTTTGTGACCTCTCCTGCTAAGCATCTCGGTGAGTGTTCATGCAGATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGACCTCTCCTGCTAAGCATCTCGGTGAGTGTTCATGCAGATAG  900

seq1  AAATAATTGTCATTCTAAAATTAGCTTCCACCACTGGTATAAGAACTCGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTGTCATTCTAAAATTAGCTTCCACCACTGGTATAAGAACTCGT  950

seq1  AATAAATAAGAAAAGGAATTTAAGATGATCCAAGTTCAATGACTCCTATG  1000
      |||||||||||||||  |||||||||||||| |||   ||||||||||||
seq2  AATAAATAAGAAAAG--ATTTAAGATGATCC-AGT--CATGACTCCTATG  995

seq1  ATTTACAAACAGTAAGGTATTAGGGGGAGTCAGAATTCCAAGAAGGTCTA  1050
      | ||||||||||||| ||||||||||||||||||||| |||||| |||||
seq2  A-TTACAAACAGTAA-GTATTAGGGGGAGTCAGAATT-CAAGAA-GTCTA  1041

seq1  AGAGACTGCCATATCCAGGGATCCATCCCATAATTAGCCTCCAAACGATG  1100
      |||||||| ||||| ||||||||||| |||||| ||| |||   ||||||
seq2  AGAGACTG-CATATTCAGGGATCCAT-CCATAA-TAG-CTC---ACGATG  1084

seq1  ACACCATTTCATACACTAGCAAGCGTTTGGTGCAAGGACCGTGATATAGC  1150
      | |||  |||  |||||||||||||  |||| |||| ||    ||||| |
seq2  A-ACCCATTCTAACACTAGCAAGCG--TGGTCCAAGAAC---TATATAAC  1128

seq1  TGTCTCTTGTGAG-ACTAGGCCGGGGCCTAACAAACACAGAAGTGGATGC  1199
      |||| |||||||| ||||    |    |||||||||| |||| |||  | 
seq2  TGTC-CTTGTGAGAACTA----GCTAACTAACAAACATAGAA-TGGGAGT  1172

seq1  TCACAGTCAACTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGA  1249
      || ||||  || ||||   | |||  |||                     
seq2  TC-CAGT--ACAATTG--AGTATCCAAGG---------------------  1196

seq1  GAAAGTATCCAAGG  1263
                    
seq2  --------------  1196

seq1: chr15_39903361_39904480
seq2: B6Ng01-094J20.g_69_1169 (reverse)

seq1  TGTCCTTGTTTTCAGTACCTGCC-ATAAGCTTAGACAGTATTTGCAAGGA  49
      ||||||   |||||||||||||| ||||||||||||| ||||||||  ||
seq2  TGTCCT--GTTTCAGTACCTGCCTATAAGCTTAGACA-TATTTGCA--GA  45

seq1  TAAAAGATGGCCCATCAAACTCATTTCCCATAACAGCCATATTGTTCCTT  99
      |  ||||  |||||||||||||| ||||||||||||||| ||||||||||
seq2  T--AAGAGTGCCCATCAAACTCA-TTCCCATAACAGCCA-ATTGTTCCTT  91

seq1  GTATGTGACT-CCCACATCACACATCAGCTCTTGAAATCTTCAAAGTGGT  148
      |||||||||| |||||||||||||||||||| ||||||| ||||||||||
seq2  GTATGTGACTCCCCACATCACACATCAGCTC-TGAAATC-TCAAAGTGGT  139

seq1  CCTTTCACTCAAATGATCTCCCACTACTATTTACCAGGAATTAAGGAAGC  198
      || |||||||||||||||||||||||||| |||||||||  |||||||||
seq2  CC-TTCACTCAAATGATCTCCCACTACTA-TTACCAGGA--TAAGGAAGC  185

seq1  TATTTAGAAGTATTTAGAGGTTGGTTTTTTTGTTGTTGTTTTTTTGTTTT  248
      || |||| ||||||||||||| |   ||||||||||   |||||||||||
seq2  TA-TTAG-AGTATTTAGAGGTGG---TTTTTGTTGT--GTTTTTTGTTTT  228

seq1  GTTTTTAATTAATTAATTAATTTTTTTAATCACAAAAGCAGTCTTTGTTC  298
      ||||| |||||| ||| |||||||||||||||||||||||||||||||||
seq2  GTTTTAAATTAA-TAAATAATTTTTTTAATCACAAAAGCAGTCTTTGTTC  277

seq1  AAGTGTAGGT-AATAGGAAAAAGGGTTTCTGCCTCATTTTACTCTTGTTC  347
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGGTAAATAGGAAAAAGGGTTTCTGCCTCATTTTACTCTTGTTC  327

seq1  TATTTTATTTGAATTTCAGTGTCTCG-CCTTATTCCCTTCTCAGCTGAAG  396
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  TATTTTATTGGAATTTCAGTGTCTCGCCCTTATTCCCTTCTCAGCTGAAG  377

seq1  GAGACAATCCTACTGTATATTTTACCACCACAAAAGGAGGAAGAGGGATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATCCTACTGTATATTTTACCACCACAAAAGGAGGAAGAGGGATC  427

seq1  AAGTGAACCCACCTAGGGTTCAAACACAAACAGAACCAGGAAGGAGGGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACCCACCTAGGGTTCAAACACAAACAGAACCAGGAAGGAGGGAT  477

seq1  AAGATGCACGAACTTAGTTTGAACAGCATTGTTGACAAAGCCAACCAGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCACGAACTTAGTTTGAACAGCATTGTTGACAAAGCCAACCAGCA  527

seq1  TCATCAGGCTCATAAACACAGAGGTTGTGGTAACTTTCATCACAGATCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGGCTCATAAACACAGAGGTTGTGGTAACTTTCATCACAGATCTT  577

seq1  AATATGTGTTCAAATCTCAAAATCACAGGCAAACACACTGATTTCTGAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTGTTCAAATCTCAAAATCACAGGCAAACACACTGATTTCTGAGT  627

seq1  CCTGATGCTTCTCTATAAACCACATCTGCATAGCAGAAGGACCATAGATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCTTCTCTATAAACCACATCTGCATAGCAGAAGGACCATAGATA  677

seq1  GGGTTTGCAGCTTAGAAACAGAAACTCACCACGTTTTGTGTAGATCTGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGCAGCTTAGAAACAGAAACTCACCACGTTTTGTGTAGATCTGGA  727

seq1  TCAGTCAGTCTCTAGAGTAAGAATAATGATACCCAAGCCATCCACTTTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGTCTCTAGAGTAAGAATAATGATACCCAAGCCATCCACTTTCA  777

seq1  CAGAGTTGTAGGAAGATAGAAGAGAAGATTCTTTAGGAAAGAGGTTTGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGTAGGAAGATAGAAGAGAAGATTCTTTAGGAAAGAGGTTTGTT  827

seq1  TTGTATTTTGTAGATATTGGAATCACTTAAAATTCCAGGACTCAAACGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTTGTAGATATTGGAATCACTTAAAATTCCAGGACTCAAACGAT  877

seq1  ATGTTGATAAGCCACTGAAATGCATTTGAACTCCCATGAAAAAGAACAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGATAAGCCACTGAAATGCATTTGAACTCCCATGAAAAAGAACAGC  927

seq1  AACAAACCTGAACCCACACCAGAGGAAGTGGTTCTTTTATTTTTATGTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCTGAACCCACACCAGAGGAAGTGGTTCTTTTATTTTTATGTGT  977

seq1  TATAGCTCATCAATTGGGAAATCCAGCCATCAGCTTGAGATAGGATGGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTCATCAATTGGGAAATCCAGCCATCAGCTTGAGATAGGATGGGA  1027

seq1  AGACAGGAAAAATTACATGGGCTGTGGGAAGAAAGTCTGATAGAAACTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAAAAATTACATGGGCTGTGGGAAGAAAGTCTGATAGAAACTTC  1077

seq1  TCACCAGTGAAGAATCAAGAATTC  1120
      ||||||||||||||||||||||||
seq2  TCACCAGTGAAGAATCAAGAATTC  1101