BAC Information

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BAC

Clone NameB6Ng01-096A08
Chromosome15 (Build37)
Map Location 16,194,165 - 16,352,541
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040033, LOC100040046, EG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096A08.bB6Ng01-096A08.g
ACCDH906799DH906800
length1,1931,022
definitionDH906799|Mus musculus domesticus DNA, BAC clone: B6Ng01-096A08, 5' end.DH906800|Mus musculus domesticus DNA, BAC clone: B6Ng01-096A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,351,343 - 16,352,541)(16,194,165 - 16,195,076)
sequence
gaattcatctgagtttatagaggaaaattcctaattgaagaatacaagta
ataagactaaaactaattctgcagaagaatagtgttatcagtatttatcc
atctcttaattaatttaaaaatattacatattcttatttatatgtgtgtc
tttagattatgagcattggcatagttatggcacaaagttcatgaagttgc
agaaaacttgtaggcattaattattttcatcaacagtgtacaacttggag
ctaggtcgcactcccatcatcagactttgttgaaaatgcctttacctgct
gttccatctgttaacattttacattatttttttcatgtttaacttctgtt
tatagtcaatttggtgtctacatatttcacaaaaattaaatattttgttg
tagcaaaaataacacatacatttagacttagctattaacacctggtatta
tgtaggaaatctctaagcataaaatgatttcataatgtctttatgggttt
ctatggtgataagctgtttgccctgataggcaaatatagttgaatgagca
ttagtatctcttgcattataaattctgttgtcattatctgtctaagtcat
taatctcatacattgttcctaaatctcctcaaagtacatcaaaacttaaa
atagcttcttttgtgaaacttcataggaactgcagctggataatttgttc
aacaccagtggtgctgaaatattccaatgatacctaaatgcactccccag
aacatttgtgagatggctaacatatccattatagaagcttctgttaaact
ttcctgaaattatgtttcccagggagttaatttatagacctgaaaaatgt
gcgattggtgtcaatttaacctgaatttggattttctgtaatcacaatat
gttaattgaagtccccttacatattttagtataggctaatcagttccagt
ctttagcatattcattccttagcttctccattttatttccacatttcact
ggtgacctccacatgaagttgagtatggcatcgtctagggacttttctct
aatagaatccaaatttttgtatacctgacacatgttattttattcttaca
gaacaagcacaggcatttgtattactggattcatgtacatcagttctcct
taaacccttcattacatgcactagaaggagaggtactgtgtgt
gaattcttaaaagataatattgctgtgtcacatttctgtgaactacaaat
acatttctgttgagccttgaatatgattgaatacagagaacaatgtaaag
taatttgaattggacacatgccagtattttaaattctccacagctctact
tatctgtctatgcttacccaatatttgaatgtttaaatattgcatttgaa
agtatcagccatatgaggatgcaaaaaatagaatgagtttcttgccatct
tctggtgtcttcattactttttttcttatcaatgtcttaaaggttttata
atacaagtatatatgtctgatatatatcagtaagggtactgactttttgt
gtgctaatttgatagcagaaattataactacagaatagacattttctggt
gaatcttttaaaaatatttatttatttatttatttatttatttatttatt
tatttatttaatgtatatgagtacaccatttttctcttcaggcacaccag
aaaagggcatcagattccattacagatggttgtgagctaccatgtggttg
ctgagaattgaaatcaggacctctggaagagcaaccaatgctctttgact
actgagacatctctctccgtccctacttggtaaattctgtgtagtctcta
atatataaaattgtattttttgaaaatgaaagtacttggacttctttaat
ttatactggtattccttgatattcttcagtttttttattgctctaaataa
gttttcagttaatgaaatcctctcattgttcatgctttttgtgaatatgc
tttgagtttagtttgaaattgattttggtaaagctttgtattgtttttct
tataatgaggtgaaagtgatgaatgggtttttctttcagtatgtttatgt
ggtgcgttatatttattgacttacttatattgaaccatccctgaatacta
gggttaaatgactgatcattgtgaattatctttttcatatgtactaaaat
ttatctgaaaatatttttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16351343_16352541
seq2: B6Ng01-096A08.b_46_1238 (reverse)

seq1  ACACACAGTAACCTCTCCCTTCTAGTGCATGTAATGAAGGGTGTTAAAGG  50
      ||||||||| |||||| |||||||||||||||||||||||  ||| ||||
seq2  ACACACAGT-ACCTCT-CCTTCTAGTGCATGTAATGAAGG--GTTTAAGG  46

seq1  AGAACCTGATGTTACATGAAATCCCAGTAATACAAATGCCTGTGCTTTGT  100
      |||| |||||| ||||||||   |||||||||||||||||||||| ||||
seq2  AGAA-CTGATG-TACATGAA--TCCAGTAATACAAATGCCTGTGC-TTGT  91

seq1  TCTGTAAG-ATAAA--TACATGTGTCAGGTATTACAGAATTTGGATTCTA  147
      |||||||| |||||   |||||||||||||||   | |||||||||||||
seq2  TCTGTAAGAATAAAATAACATGTGTCAGGTATACAAAAATTTGGATTCTA  141

seq1  TTAGAGAAAAGTCCCTAGACGATGCCATACTCAACTTCATGTGGAGGTCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAAAGTCCCTAGACGATGCCATACTCAACTTCATGTGGAGGTCA  191

seq1  CCAGTGAAATGTGGAAATAAAATGGAGAAGCTAAGGAATGAATATGCTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAAATGTGGAAATAAAATGGAGAAGCTAAGGAATGAATATGCTAA  241

seq1  AGACTGGAACTGATTAGCCTATACTAAAATATGTAAGGGGACTTCAATTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGAACTGATTAGCCTATACTAAAATATGTAAGGGGACTTCAATTA  291

seq1  ACATATTGTGATTACAGAAAATCCAAATTCAGGTTAAATTGACACCAATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGTGATTACAGAAAATCCAAATTCAGGTTAAATTGACACCAATC  341

seq1  GCACATTTTTCAGGTCTATAAATTAACTCCCTGGGAAACATAATTTCAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTTTCAGGTCTATAAATTAACTCCCTGGGAAACATAATTTCAGG  391

seq1  AAAGTTTAACAGAAGCTTCTATAATGGATATGTTAGCCATCTCACAAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTAACAGAAGCTTCTATAATGGATATGTTAGCCATCTCACAAATG  441

seq1  TTCTGGGGAGTGCATTTAGGTATCATTGGAATATTTCAGCACCACTGGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGAGTGCATTTAGGTATCATTGGAATATTTCAGCACCACTGGTG  491

seq1  TTGAACAAATTATCCAGCTGCAGTTCCTATGAAGTTTCACAAAAGAAGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAAATTATCCAGCTGCAGTTCCTATGAAGTTTCACAAAAGAAGCT  541

seq1  ATTTTAAGTTTTGATGTACTTTGAGGAGATTTAGGAACAATGTATGAGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTTTTGATGTACTTTGAGGAGATTTAGGAACAATGTATGAGAT  591

seq1  TAATGACTTAGACAGATAATGACAACAGAATTTATAATGCAAGAGATACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTTAGACAGATAATGACAACAGAATTTATAATGCAAGAGATACT  641

seq1  AATGCTCATTCAACTATATTTGCCTATCAGGGCAAACAGCTTATCACCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCATTCAACTATATTTGCCTATCAGGGCAAACAGCTTATCACCAT  691

seq1  AGAAACCCATAAAGACATTATGAAATCATTTTATGCTTAGAGATTTCCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCATAAAGACATTATGAAATCATTTTATGCTTAGAGATTTCCTA  741

seq1  CATAATACCAGGTGTTAATAGCTAAGTCTAAATGTATGTGTTATTTTTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATACCAGGTGTTAATAGCTAAGTCTAAATGTATGTGTTATTTTTGC  791

seq1  TACAACAAAATATTTAATTTTTGTGAAATATGTAGACACCAAATTGACTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAAAATATTTAATTTTTGTGAAATATGTAGACACCAAATTGACTA  841

seq1  TAAACAGAAGTTAAACATGAAAAAAATAATGTAAAATGTTAACAGATGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAAGTTAAACATGAAAAAAATAATGTAAAATGTTAACAGATGGA  891

seq1  ACAGCAGGTAAAGGCATTTTCAACAAAGTCTGATGATGGGAGTGCGACCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGTAAAGGCATTTTCAACAAAGTCTGATGATGGGAGTGCGACCT  941

seq1  AGCTCCAAGTTGTACACTGTTGATGAAAATAATTAATGCCTACAAGTTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAAGTTGTACACTGTTGATGAAAATAATTAATGCCTACAAGTTTT  991

seq1  CTGCAACTTCATGAACTTTGTGCCATAACTATGCCAATGCTCATAATCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTTCATGAACTTTGTGCCATAACTATGCCAATGCTCATAATCTA  1041

seq1  AAGACACACATATAAATAAGAATATGTAATATTTTTAAATTAATTAAGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACACATATAAATAAGAATATGTAATATTTTTAAATTAATTAAGAG  1091

seq1  ATGGATAAATACTGATAACACTATTCTTCTGCAGAATTAGTTTTAGTCTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAAATACTGATAACACTATTCTTCTGCAGAATTAGTTTTAGTCTT  1141

seq1  ATTACTTGTATTCTTCAATTAGGAATTTTCCTCTATAAACTCAGATGAAT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTGTATTCTTCAATTAGGAATTTTCCTCTATAAACTCAGATGAAT  1191

seq1  TC  1199
      ||
seq2  TC  1193

seq1: chr15_16194165_16195076
seq2: B6Ng01-096A08.g_69_980

seq1  GAATTCTTAAAAGATAATATTGCTGTGTCACATTTCTGTGAACTACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAAGATAATATTGCTGTGTCACATTTCTGTGAACTACAAAT  50

seq1  ACATTTCTGTTGAGCCTTGAATATGATTGAATACAGAGAACAATGTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTGTTGAGCCTTGAATATGATTGAATACAGAGAACAATGTAAAG  100

seq1  TAATTTGAATTGGACACATGCCAGTATTTTAAATTCTCCACAGCTCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGAATTGGACACATGCCAGTATTTTAAATTCTCCACAGCTCTACT  150

seq1  TATCTGTCTATGCTTACCCAATATTTGAATGTTTAAATATTGCATTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTCTATGCTTACCCAATATTTGAATGTTTAAATATTGCATTTGAA  200

seq1  AGTATCAGCCATATGAGGATGCAAAAAATAGAATGAGTTTCTTGCCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAGCCATATGAGGATGCAAAAAATAGAATGAGTTTCTTGCCATCT  250

seq1  TCTGGTGTCTTCATTACTTTTTTTCTTATCAATGTCTTAAAGGTTTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTCTTCATTACTTTTTTTCTTATCAATGTCTTAAAGGTTTTATA  300

seq1  ATACAAGTATATATGTCTGATATATATCAGTAAGGGTACTGACTTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTATATATGTCTGATATATATCAGTAAGGGTACTGACTTTTTGT  350

seq1  GTGCTAATTTGATAGCAGAAATTATAACTACAGAATAGACATTTTCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAATTTGATAGCAGAAATTATAACTACAGAATAGACATTTTCTGGT  400

seq1  GAATCTTTTAAAAATATTTATTTATTTATTTATTTATTTATTTATTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTTAAAAATATTTATTTATTTATTTATTTATTTATTTATTTATT  450

seq1  TATTTATTTAATGTATATGAGTACACCATTTTTCTCTTCAGGCACACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTAATGTATATGAGTACACCATTTTTCTCTTCAGGCACACCAG  500

seq1  AAAAGGGCATCAGATTCCATTACAGATGGTTGTGAGCTACCATGTGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCATCAGATTCCATTACAGATGGTTGTGAGCTACCATGTGGTTG  550

seq1  CTGAGAATTGAAATCAGGACCTCTGGAAGAGCAACCAATGCTCTTTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATTGAAATCAGGACCTCTGGAAGAGCAACCAATGCTCTTTGACT  600

seq1  ACTGAGACATCTCTCTCCGTCCCTACTTGGTAAATTCTGTGTAGTCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACATCTCTCTCCGTCCCTACTTGGTAAATTCTGTGTAGTCTCTA  650

seq1  ATATATAAAATTGTATTTTTTGAAAATGAAAGTACTTGGACTTCTTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAAATTGTATTTTTTGAAAATGAAAGTACTTGGACTTCTTTAAT  700

seq1  TTATACTGGTATTCCTTGATATTCTTCAGTTTTTTTATTGCTCTAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTGGTATTCCTTGATATTCTTCAGTTTTTTTATTGCTCTAAATAA  750

seq1  GTTTTCAGTTAATGAAATCCTCTCATTGTTCATGCTTTTTGTGAATATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGTTAATGAAATCCTCTCATTGTTCATGCTTTTTGTGAATATGC  800

seq1  TTTGAGTTTAGTTTGAAATTGATTTTGGTAAAGCTTTGTATTGTTTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTTAGTTTGAAATTGATTTTGGTAAAGCTTTGTATTGTTTTTCT  850

seq1  TATAATGAGGTGAAAGTGATGAATGGGTTTTTCTTTCAGTATGTTTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAGGTGAAAGTGATGAATGGGTTTTTCTTTCAGTATGTTTATGT  900

seq1  GGTGCGTTATAT  912
      ||||||||||||
seq2  GGTGCGTTATAT  912